data_2OHL # _model_server_result.job_id Ms-ux8gvPEt5eTB1rIbpRA _model_server_result.datetime_utc '2024-10-19 16:43:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":389}' # _entry.id 2OHL # _exptl.entry_id 2OHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OHL _cell.length_a 102.833 _cell.length_b 102.833 _cell.length_c 168.85 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 155 1_555 A SG CYS 376 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 234 A CYS 217 1_555 A SG CYS 399 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 286 A CYS 269 1_555 A SG CYS 336 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 103 n n S C1 DMS sing 104 n n S C2 DMS sing 105 n n C1 H11 DMS sing 106 n n C1 H12 DMS sing 107 n n C1 H13 DMS sing 108 n n C2 H21 DMS sing 109 n n C2 H22 DMS sing 110 n n C2 H23 DMS sing 111 n n # _atom_sites.entry_id 2OHL _atom_sites.fract_transf_matrix[1][1] 0.009725 _atom_sites.fract_transf_matrix[1][2] 0.005614 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 386 201 IOD IOD . C 2 IOD A 1 387 202 IOD IOD . D 2 IOD A 1 388 203 IOD IOD . E 3 DMS A 1 389 204 DMS DMS . F 4 2AQ A 1 390 1 2AQ 2AQ . G 5 HOH A 1 391 2 HOH HOH . G 5 HOH A 2 392 3 HOH HOH . G 5 HOH A 3 393 4 HOH HOH . G 5 HOH A 4 394 5 HOH HOH . G 5 HOH A 5 395 6 HOH HOH . G 5 HOH A 6 396 7 HOH HOH . G 5 HOH A 7 397 8 HOH HOH . G 5 HOH A 8 398 9 HOH HOH . G 5 HOH A 9 399 10 HOH HOH . G 5 HOH A 10 400 11 HOH HOH . G 5 HOH A 11 401 12 HOH HOH . G 5 HOH A 12 402 13 HOH HOH . G 5 HOH A 13 403 14 HOH HOH . G 5 HOH A 14 404 15 HOH HOH . G 5 HOH A 15 405 16 HOH HOH . G 5 HOH A 16 406 17 HOH HOH . G 5 HOH A 17 407 18 HOH HOH . G 5 HOH A 18 408 19 HOH HOH . G 5 HOH A 19 409 20 HOH HOH . G 5 HOH A 20 410 21 HOH HOH . G 5 HOH A 21 411 22 HOH HOH . G 5 HOH A 22 412 23 HOH HOH . G 5 HOH A 23 413 24 HOH HOH . G 5 HOH A 24 414 25 HOH HOH . G 5 HOH A 25 415 26 HOH HOH . G 5 HOH A 26 416 27 HOH HOH . G 5 HOH A 27 417 28 HOH HOH . G 5 HOH A 28 418 29 HOH HOH . G 5 HOH A 29 419 30 HOH HOH . G 5 HOH A 30 420 31 HOH HOH . G 5 HOH A 31 421 32 HOH HOH . G 5 HOH A 32 422 33 HOH HOH . G 5 HOH A 33 423 34 HOH HOH . G 5 HOH A 34 424 35 HOH HOH . G 5 HOH A 35 425 36 HOH HOH . G 5 HOH A 36 426 37 HOH HOH . G 5 HOH A 37 427 38 HOH HOH . G 5 HOH A 38 428 39 HOH HOH . G 5 HOH A 39 429 40 HOH HOH . G 5 HOH A 40 430 41 HOH HOH . G 5 HOH A 41 431 42 HOH HOH . G 5 HOH A 42 432 43 HOH HOH . G 5 HOH A 43 433 44 HOH HOH . G 5 HOH A 44 434 45 HOH HOH . G 5 HOH A 45 435 46 HOH HOH . G 5 HOH A 46 436 47 HOH HOH . G 5 HOH A 47 437 48 HOH HOH . G 5 HOH A 48 438 49 HOH HOH . G 5 HOH A 49 439 50 HOH HOH . G 5 HOH A 50 440 51 HOH HOH . G 5 HOH A 51 441 52 HOH HOH . G 5 HOH A 52 442 53 HOH HOH . G 5 HOH A 53 443 54 HOH HOH . G 5 HOH A 54 444 56 HOH HOH . G 5 HOH A 55 445 58 HOH HOH . G 5 HOH A 56 446 59 HOH HOH . G 5 HOH A 57 447 60 HOH HOH . G 5 HOH A 58 448 62 HOH HOH . G 5 HOH A 59 449 63 HOH HOH . G 5 HOH A 60 450 64 HOH HOH . G 5 HOH A 61 451 66 HOH HOH . G 5 HOH A 62 452 67 HOH HOH . G 5 HOH A 63 453 68 HOH HOH . G 5 HOH A 64 454 70 HOH HOH . G 5 HOH A 65 455 71 HOH HOH . G 5 HOH A 66 456 72 HOH HOH . G 5 HOH A 67 457 73 HOH HOH . G 5 HOH A 68 458 76 HOH HOH . G 5 HOH A 69 459 77 HOH HOH . G 5 HOH A 70 460 79 HOH HOH . G 5 HOH A 71 461 80 HOH HOH . G 5 HOH A 72 462 81 HOH HOH . G 5 HOH A 73 463 82 HOH HOH . G 5 HOH A 74 464 83 HOH HOH . G 5 HOH A 75 465 84 HOH HOH . G 5 HOH A 76 466 85 HOH HOH . G 5 HOH A 77 467 87 HOH HOH . G 5 HOH A 78 468 88 HOH HOH . G 5 HOH A 79 469 89 HOH HOH . G 5 HOH A 80 470 91 HOH HOH . G 5 HOH A 81 471 92 HOH HOH . G 5 HOH A 82 472 93 HOH HOH . G 5 HOH A 83 473 95 HOH HOH . G 5 HOH A 84 474 96 HOH HOH . G 5 HOH A 85 475 97 HOH HOH . G 5 HOH A 86 476 98 HOH HOH . G 5 HOH A 87 477 100 HOH HOH . G 5 HOH A 88 478 102 HOH HOH . G 5 HOH A 89 479 103 HOH HOH . G 5 HOH A 90 480 104 HOH HOH . G 5 HOH A 91 481 105 HOH HOH . G 5 HOH A 92 482 106 HOH HOH . G 5 HOH A 93 483 107 HOH HOH . G 5 HOH A 94 484 108 HOH HOH . G 5 HOH A 95 485 109 HOH HOH . G 5 HOH A 96 486 110 HOH HOH . G 5 HOH A 97 487 111 HOH HOH . G 5 HOH A 98 488 112 HOH HOH . G 5 HOH A 99 489 113 HOH HOH . G 5 HOH A 100 490 114 HOH HOH . G 5 HOH A 101 491 115 HOH HOH . G 5 HOH A 102 492 116 HOH HOH . G 5 HOH A 103 493 117 HOH HOH . G 5 HOH A 104 494 118 HOH HOH . G 5 HOH A 105 495 119 HOH HOH . G 5 HOH A 106 496 120 HOH HOH . G 5 HOH A 107 497 121 HOH HOH . G 5 HOH A 108 498 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 3 61.795 71.008 6.979 1 47.54 ? S DMS 389 A 1 HETATM 2 O O DMS . . . E 3 62.552 72.59 7.376 1 49.19 ? O DMS 389 A 1 HETATM 3 C C1 DMS . . . E 3 62.908 69.742 7.63 1 45.95 ? C1 DMS 389 A 1 HETATM 4 C C2 DMS . . . E 3 60.282 70.757 7.958 1 46.44 ? C2 DMS 389 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #