data_2OHM # _model_server_result.job_id cL19UUKELLEp2-bXnoBBBw _model_server_result.datetime_utc '2024-12-06 14:01:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":388}' # _entry.id 2OHM # _exptl.entry_id 2OHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OHM _cell.length_a 101.172 _cell.length_b 101.172 _cell.length_c 170.924 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 155 1_555 A SG CYS 376 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 234 A CYS 217 1_555 A SG CYS 399 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 286 A CYS 269 1_555 A SG CYS 336 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 112 n n S C1 DMS sing 113 n n S C2 DMS sing 114 n n C1 H11 DMS sing 115 n n C1 H12 DMS sing 116 n n C1 H13 DMS sing 117 n n C2 H21 DMS sing 118 n n C2 H22 DMS sing 119 n n C2 H23 DMS sing 120 n n # _atom_sites.entry_id 2OHM _atom_sites.fract_transf_matrix[1][1] 0.009884 _atom_sites.fract_transf_matrix[1][2] 0.005707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 386 101 IOD IOD . C 2 IOD A 1 387 102 IOD IOD . D 3 DMS A 1 388 103 DMS DMS . E 4 8AP A 1 389 1 8AP 8AP . F 5 HOH A 1 390 2 HOH HOH . F 5 HOH A 2 391 3 HOH HOH . F 5 HOH A 3 392 4 HOH HOH . F 5 HOH A 4 393 5 HOH HOH . F 5 HOH A 5 394 6 HOH HOH . F 5 HOH A 6 395 7 HOH HOH . F 5 HOH A 7 396 8 HOH HOH . F 5 HOH A 8 397 9 HOH HOH . F 5 HOH A 9 398 10 HOH HOH . F 5 HOH A 10 399 11 HOH HOH . F 5 HOH A 11 400 12 HOH HOH . F 5 HOH A 12 401 14 HOH HOH . F 5 HOH A 13 402 15 HOH HOH . F 5 HOH A 14 403 16 HOH HOH . F 5 HOH A 15 404 18 HOH HOH . F 5 HOH A 16 405 19 HOH HOH . F 5 HOH A 17 406 20 HOH HOH . F 5 HOH A 18 407 21 HOH HOH . F 5 HOH A 19 408 22 HOH HOH . F 5 HOH A 20 409 23 HOH HOH . F 5 HOH A 21 410 24 HOH HOH . F 5 HOH A 22 411 26 HOH HOH . F 5 HOH A 23 412 27 HOH HOH . F 5 HOH A 24 413 28 HOH HOH . F 5 HOH A 25 414 29 HOH HOH . F 5 HOH A 26 415 30 HOH HOH . F 5 HOH A 27 416 31 HOH HOH . F 5 HOH A 28 417 33 HOH HOH . F 5 HOH A 29 418 34 HOH HOH . F 5 HOH A 30 419 37 HOH HOH . F 5 HOH A 31 420 38 HOH HOH . F 5 HOH A 32 421 39 HOH HOH . F 5 HOH A 33 422 43 HOH HOH . F 5 HOH A 34 423 44 HOH HOH . F 5 HOH A 35 424 48 HOH HOH . F 5 HOH A 36 425 49 HOH HOH . F 5 HOH A 37 426 50 HOH HOH . F 5 HOH A 38 427 51 HOH HOH . F 5 HOH A 39 428 52 HOH HOH . F 5 HOH A 40 429 54 HOH HOH . F 5 HOH A 41 430 55 HOH HOH . F 5 HOH A 42 431 56 HOH HOH . F 5 HOH A 43 432 59 HOH HOH . F 5 HOH A 44 433 60 HOH HOH . F 5 HOH A 45 434 62 HOH HOH . F 5 HOH A 46 435 63 HOH HOH . F 5 HOH A 47 436 65 HOH HOH . F 5 HOH A 48 437 67 HOH HOH . F 5 HOH A 49 438 69 HOH HOH . F 5 HOH A 50 439 70 HOH HOH . F 5 HOH A 51 440 71 HOH HOH . F 5 HOH A 52 441 72 HOH HOH . F 5 HOH A 53 442 73 HOH HOH . F 5 HOH A 54 443 74 HOH HOH . F 5 HOH A 55 444 75 HOH HOH . F 5 HOH A 56 445 76 HOH HOH . F 5 HOH A 57 446 77 HOH HOH . F 5 HOH A 58 447 78 HOH HOH . F 5 HOH A 59 448 79 HOH HOH . F 5 HOH A 60 449 80 HOH HOH . F 5 HOH A 61 450 81 HOH HOH . F 5 HOH A 62 451 82 HOH HOH . F 5 HOH A 63 452 83 HOH HOH . F 5 HOH A 64 453 84 HOH HOH . F 5 HOH A 65 454 85 HOH HOH . F 5 HOH A 66 455 86 HOH HOH . F 5 HOH A 67 456 87 HOH HOH . F 5 HOH A 68 457 88 HOH HOH . F 5 HOH A 69 458 89 HOH HOH . F 5 HOH A 70 459 90 HOH HOH . F 5 HOH A 71 460 91 HOH HOH . F 5 HOH A 72 461 92 HOH HOH . F 5 HOH A 73 462 93 HOH HOH . F 5 HOH A 74 463 94 HOH HOH . F 5 HOH A 75 464 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 61.146 70.524 6.213 1 50.4 ? S DMS 388 A 1 HETATM 2 O O DMS . . . D 3 62.124 71.986 5.839 1 48.23 ? O DMS 388 A 1 HETATM 3 C C1 DMS . . . D 3 62.067 69.467 7.371 1 51.39 ? C1 DMS 388 A 1 HETATM 4 C C2 DMS . . . D 3 59.652 70.923 7.188 1 40.18 ? C2 DMS 388 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #