data_2OHM
#
_model_server_result.job_id            twlHpbRQVn18hAGxn1s2sg 
_model_server_result.datetime_utc      '2024-11-22 00:35:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ohm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":389}' 
#
_entry.id    2OHM 
#
_exptl.entry_id    2OHM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              199.252 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~3~-BENZYLPYRIDINE-2,3-DIAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2OHM 
_cell.length_a            101.172 
_cell.length_b            101.172 
_cell.length_c            170.924 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OHM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 172 A CYS 155 1_555 A SG CYS 376 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 234 A CYS 217 1_555 A SG CYS 399 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 286 A CYS 269 1_555 A SG CYS 336 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C12 H13 N3' 
_chem_comp.formula_weight    199.252 
_chem_comp.id                8AP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~3~-BENZYLPYRIDINE-2,3-DIAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 8AP sing 1 n n 
N1 HN11 8AP sing 2 n n 
N1 HN12 8AP sing 3 n n 
C2 N3 8AP doub 4 n y 
C2 C7 8AP sing 5 n y 
N3 C4 8AP sing 6 n y 
C4 C5 8AP doub 7 n y 
C4 H4 8AP sing 8 n n 
C5 C6 8AP sing 9 n y 
C5 H5 8AP sing 10 n n 
C6 C7 8AP doub 11 n y 
C6 H6 8AP sing 12 n n 
C7 N8 8AP sing 13 n n 
N8 C9 8AP sing 14 n n 
N8 HN8 8AP sing 15 n n 
C9 C10 8AP sing 16 n n 
C9 H91 8AP sing 17 n n 
C9 H92 8AP sing 18 n n 
C10 C11 8AP sing 19 n y 
C10 C15 8AP doub 20 n y 
C11 C12 8AP doub 21 n y 
C11 H11 8AP sing 22 n n 
C12 C13 8AP sing 23 n y 
C12 H12 8AP sing 24 n n 
C13 C14 8AP doub 25 n y 
C13 H13 8AP sing 26 n n 
C14 C15 8AP sing 27 n y 
C14 H14 8AP sing 28 n n 
C15 H15 8AP sing 29 n n 
#
_atom_sites.entry_id                     2OHM 
_atom_sites.fract_transf_matrix[1][1]    0.009884 
_atom_sites.fract_transf_matrix[1][2]    0.005707 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011413 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 386 101 IOD IOD . 
C 2 IOD A 1 387 102 IOD IOD . 
D 3 DMS A 1 388 103 DMS DMS . 
E 4 8AP A 1 389 1 8AP 8AP . 
F 5 HOH A 1 390 2 HOH HOH . 
F 5 HOH A 2 391 3 HOH HOH . 
F 5 HOH A 3 392 4 HOH HOH . 
F 5 HOH A 4 393 5 HOH HOH . 
F 5 HOH A 5 394 6 HOH HOH . 
F 5 HOH A 6 395 7 HOH HOH . 
F 5 HOH A 7 396 8 HOH HOH . 
F 5 HOH A 8 397 9 HOH HOH . 
F 5 HOH A 9 398 10 HOH HOH . 
F 5 HOH A 10 399 11 HOH HOH . 
F 5 HOH A 11 400 12 HOH HOH . 
F 5 HOH A 12 401 14 HOH HOH . 
F 5 HOH A 13 402 15 HOH HOH . 
F 5 HOH A 14 403 16 HOH HOH . 
F 5 HOH A 15 404 18 HOH HOH . 
F 5 HOH A 16 405 19 HOH HOH . 
F 5 HOH A 17 406 20 HOH HOH . 
F 5 HOH A 18 407 21 HOH HOH . 
F 5 HOH A 19 408 22 HOH HOH . 
F 5 HOH A 20 409 23 HOH HOH . 
F 5 HOH A 21 410 24 HOH HOH . 
F 5 HOH A 22 411 26 HOH HOH . 
F 5 HOH A 23 412 27 HOH HOH . 
F 5 HOH A 24 413 28 HOH HOH . 
F 5 HOH A 25 414 29 HOH HOH . 
F 5 HOH A 26 415 30 HOH HOH . 
F 5 HOH A 27 416 31 HOH HOH . 
F 5 HOH A 28 417 33 HOH HOH . 
F 5 HOH A 29 418 34 HOH HOH . 
F 5 HOH A 30 419 37 HOH HOH . 
F 5 HOH A 31 420 38 HOH HOH . 
F 5 HOH A 32 421 39 HOH HOH . 
F 5 HOH A 33 422 43 HOH HOH . 
F 5 HOH A 34 423 44 HOH HOH . 
F 5 HOH A 35 424 48 HOH HOH . 
F 5 HOH A 36 425 49 HOH HOH . 
F 5 HOH A 37 426 50 HOH HOH . 
F 5 HOH A 38 427 51 HOH HOH . 
F 5 HOH A 39 428 52 HOH HOH . 
F 5 HOH A 40 429 54 HOH HOH . 
F 5 HOH A 41 430 55 HOH HOH . 
F 5 HOH A 42 431 56 HOH HOH . 
F 5 HOH A 43 432 59 HOH HOH . 
F 5 HOH A 44 433 60 HOH HOH . 
F 5 HOH A 45 434 62 HOH HOH . 
F 5 HOH A 46 435 63 HOH HOH . 
F 5 HOH A 47 436 65 HOH HOH . 
F 5 HOH A 48 437 67 HOH HOH . 
F 5 HOH A 49 438 69 HOH HOH . 
F 5 HOH A 50 439 70 HOH HOH . 
F 5 HOH A 51 440 71 HOH HOH . 
F 5 HOH A 52 441 72 HOH HOH . 
F 5 HOH A 53 442 73 HOH HOH . 
F 5 HOH A 54 443 74 HOH HOH . 
F 5 HOH A 55 444 75 HOH HOH . 
F 5 HOH A 56 445 76 HOH HOH . 
F 5 HOH A 57 446 77 HOH HOH . 
F 5 HOH A 58 447 78 HOH HOH . 
F 5 HOH A 59 448 79 HOH HOH . 
F 5 HOH A 60 449 80 HOH HOH . 
F 5 HOH A 61 450 81 HOH HOH . 
F 5 HOH A 62 451 82 HOH HOH . 
F 5 HOH A 63 452 83 HOH HOH . 
F 5 HOH A 64 453 84 HOH HOH . 
F 5 HOH A 65 454 85 HOH HOH . 
F 5 HOH A 66 455 86 HOH HOH . 
F 5 HOH A 67 456 87 HOH HOH . 
F 5 HOH A 68 457 88 HOH HOH . 
F 5 HOH A 69 458 89 HOH HOH . 
F 5 HOH A 70 459 90 HOH HOH . 
F 5 HOH A 71 460 91 HOH HOH . 
F 5 HOH A 72 461 92 HOH HOH . 
F 5 HOH A 73 462 93 HOH HOH . 
F 5 HOH A 74 463 94 HOH HOH . 
F 5 HOH A 75 464 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 8AP . . . E 4 65.688 48.631 6.231 1 44.51 ? N1 8AP 389 A 1 
HETATM 2 C C2 8AP . . . E 4 66.287 47.866 7.232 1 57.04 ? C2 8AP 389 A 1 
HETATM 3 N N3 8AP . . . E 4 66.058 46.557 7.27 1 61.55 ? N3 8AP 389 A 1 
HETATM 4 C C4 8AP . . . E 4 66.591 45.755 8.184 1 62.09 ? C4 8AP 389 A 1 
HETATM 5 C C5 8AP . . . E 4 67.434 46.265 9.159 1 62.12 ? C5 8AP 389 A 1 
HETATM 6 C C6 8AP . . . E 4 67.706 47.627 9.166 1 58.82 ? C6 8AP 389 A 1 
HETATM 7 C C7 8AP . . . E 4 67.116 48.448 8.202 1 58.45 ? C7 8AP 389 A 1 
HETATM 8 N N8 8AP . . . E 4 67.395 49.821 8.19 1 60.89 ? N8 8AP 389 A 1 
HETATM 9 C C9 8AP . . . E 4 68.58 50.32 8.906 1 63.11 ? C9 8AP 389 A 1 
HETATM 10 C C10 8AP . . . E 4 69.869 49.813 8.281 1 63.37 ? C10 8AP 389 A 1 
HETATM 11 C C11 8AP . . . E 4 69.865 49.038 7.118 1 63.4 ? C11 8AP 389 A 1 
HETATM 12 C C12 8AP . . . E 4 71.052 48.588 6.559 1 62.72 ? C12 8AP 389 A 1 
HETATM 13 C C13 8AP . . . E 4 72.257 48.916 7.162 1 62.17 ? C13 8AP 389 A 1 
HETATM 14 C C14 8AP . . . E 4 72.266 49.688 8.318 1 62.71 ? C14 8AP 389 A 1 
HETATM 15 C C15 8AP . . . E 4 71.077 50.134 8.88 1 61.8 ? C15 8AP 389 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#