data_2OHM # _model_server_result.job_id ewI2ythBLjxk1CaqyAtwtg _model_server_result.datetime_utc '2024-12-07 18:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":389}' # _entry.id 2OHM # _exptl.entry_id 2OHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.252 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~3~-BENZYLPYRIDINE-2,3-DIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OHM _cell.length_a 101.172 _cell.length_b 101.172 _cell.length_c 170.924 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 155 1_555 A SG CYS 376 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 234 A CYS 217 1_555 A SG CYS 399 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 286 A CYS 269 1_555 A SG CYS 336 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C12 H13 N3' _chem_comp.formula_weight 199.252 _chem_comp.id 8AP _chem_comp.mon_nstd_flag . _chem_comp.name N~3~-BENZYLPYRIDINE-2,3-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 8AP sing 1 n n N1 HN11 8AP sing 2 n n N1 HN12 8AP sing 3 n n C2 N3 8AP doub 4 n y C2 C7 8AP sing 5 n y N3 C4 8AP sing 6 n y C4 C5 8AP doub 7 n y C4 H4 8AP sing 8 n n C5 C6 8AP sing 9 n y C5 H5 8AP sing 10 n n C6 C7 8AP doub 11 n y C6 H6 8AP sing 12 n n C7 N8 8AP sing 13 n n N8 C9 8AP sing 14 n n N8 HN8 8AP sing 15 n n C9 C10 8AP sing 16 n n C9 H91 8AP sing 17 n n C9 H92 8AP sing 18 n n C10 C11 8AP sing 19 n y C10 C15 8AP doub 20 n y C11 C12 8AP doub 21 n y C11 H11 8AP sing 22 n n C12 C13 8AP sing 23 n y C12 H12 8AP sing 24 n n C13 C14 8AP doub 25 n y C13 H13 8AP sing 26 n n C14 C15 8AP sing 27 n y C14 H14 8AP sing 28 n n C15 H15 8AP sing 29 n n # _atom_sites.entry_id 2OHM _atom_sites.fract_transf_matrix[1][1] 0.009884 _atom_sites.fract_transf_matrix[1][2] 0.005707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 386 101 IOD IOD . C 2 IOD A 1 387 102 IOD IOD . D 3 DMS A 1 388 103 DMS DMS . E 4 8AP A 1 389 1 8AP 8AP . F 5 HOH A 1 390 2 HOH HOH . F 5 HOH A 2 391 3 HOH HOH . F 5 HOH A 3 392 4 HOH HOH . F 5 HOH A 4 393 5 HOH HOH . F 5 HOH A 5 394 6 HOH HOH . F 5 HOH A 6 395 7 HOH HOH . F 5 HOH A 7 396 8 HOH HOH . F 5 HOH A 8 397 9 HOH HOH . F 5 HOH A 9 398 10 HOH HOH . F 5 HOH A 10 399 11 HOH HOH . F 5 HOH A 11 400 12 HOH HOH . F 5 HOH A 12 401 14 HOH HOH . F 5 HOH A 13 402 15 HOH HOH . F 5 HOH A 14 403 16 HOH HOH . F 5 HOH A 15 404 18 HOH HOH . F 5 HOH A 16 405 19 HOH HOH . F 5 HOH A 17 406 20 HOH HOH . F 5 HOH A 18 407 21 HOH HOH . F 5 HOH A 19 408 22 HOH HOH . F 5 HOH A 20 409 23 HOH HOH . F 5 HOH A 21 410 24 HOH HOH . F 5 HOH A 22 411 26 HOH HOH . F 5 HOH A 23 412 27 HOH HOH . F 5 HOH A 24 413 28 HOH HOH . F 5 HOH A 25 414 29 HOH HOH . F 5 HOH A 26 415 30 HOH HOH . F 5 HOH A 27 416 31 HOH HOH . F 5 HOH A 28 417 33 HOH HOH . F 5 HOH A 29 418 34 HOH HOH . F 5 HOH A 30 419 37 HOH HOH . F 5 HOH A 31 420 38 HOH HOH . F 5 HOH A 32 421 39 HOH HOH . F 5 HOH A 33 422 43 HOH HOH . F 5 HOH A 34 423 44 HOH HOH . F 5 HOH A 35 424 48 HOH HOH . F 5 HOH A 36 425 49 HOH HOH . F 5 HOH A 37 426 50 HOH HOH . F 5 HOH A 38 427 51 HOH HOH . F 5 HOH A 39 428 52 HOH HOH . F 5 HOH A 40 429 54 HOH HOH . F 5 HOH A 41 430 55 HOH HOH . F 5 HOH A 42 431 56 HOH HOH . F 5 HOH A 43 432 59 HOH HOH . F 5 HOH A 44 433 60 HOH HOH . F 5 HOH A 45 434 62 HOH HOH . F 5 HOH A 46 435 63 HOH HOH . F 5 HOH A 47 436 65 HOH HOH . F 5 HOH A 48 437 67 HOH HOH . F 5 HOH A 49 438 69 HOH HOH . F 5 HOH A 50 439 70 HOH HOH . F 5 HOH A 51 440 71 HOH HOH . F 5 HOH A 52 441 72 HOH HOH . F 5 HOH A 53 442 73 HOH HOH . F 5 HOH A 54 443 74 HOH HOH . F 5 HOH A 55 444 75 HOH HOH . F 5 HOH A 56 445 76 HOH HOH . F 5 HOH A 57 446 77 HOH HOH . F 5 HOH A 58 447 78 HOH HOH . F 5 HOH A 59 448 79 HOH HOH . F 5 HOH A 60 449 80 HOH HOH . F 5 HOH A 61 450 81 HOH HOH . F 5 HOH A 62 451 82 HOH HOH . F 5 HOH A 63 452 83 HOH HOH . F 5 HOH A 64 453 84 HOH HOH . F 5 HOH A 65 454 85 HOH HOH . F 5 HOH A 66 455 86 HOH HOH . F 5 HOH A 67 456 87 HOH HOH . F 5 HOH A 68 457 88 HOH HOH . F 5 HOH A 69 458 89 HOH HOH . F 5 HOH A 70 459 90 HOH HOH . F 5 HOH A 71 460 91 HOH HOH . F 5 HOH A 72 461 92 HOH HOH . F 5 HOH A 73 462 93 HOH HOH . F 5 HOH A 74 463 94 HOH HOH . F 5 HOH A 75 464 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 8AP . . . E 4 65.688 48.631 6.231 1 44.51 ? N1 8AP 389 A 1 HETATM 2 C C2 8AP . . . E 4 66.287 47.866 7.232 1 57.04 ? C2 8AP 389 A 1 HETATM 3 N N3 8AP . . . E 4 66.058 46.557 7.27 1 61.55 ? N3 8AP 389 A 1 HETATM 4 C C4 8AP . . . E 4 66.591 45.755 8.184 1 62.09 ? C4 8AP 389 A 1 HETATM 5 C C5 8AP . . . E 4 67.434 46.265 9.159 1 62.12 ? C5 8AP 389 A 1 HETATM 6 C C6 8AP . . . E 4 67.706 47.627 9.166 1 58.82 ? C6 8AP 389 A 1 HETATM 7 C C7 8AP . . . E 4 67.116 48.448 8.202 1 58.45 ? C7 8AP 389 A 1 HETATM 8 N N8 8AP . . . E 4 67.395 49.821 8.19 1 60.89 ? N8 8AP 389 A 1 HETATM 9 C C9 8AP . . . E 4 68.58 50.32 8.906 1 63.11 ? C9 8AP 389 A 1 HETATM 10 C C10 8AP . . . E 4 69.869 49.813 8.281 1 63.37 ? C10 8AP 389 A 1 HETATM 11 C C11 8AP . . . E 4 69.865 49.038 7.118 1 63.4 ? C11 8AP 389 A 1 HETATM 12 C C12 8AP . . . E 4 71.052 48.588 6.559 1 62.72 ? C12 8AP 389 A 1 HETATM 13 C C13 8AP . . . E 4 72.257 48.916 7.162 1 62.17 ? C13 8AP 389 A 1 HETATM 14 C C14 8AP . . . E 4 72.266 49.688 8.318 1 62.71 ? C14 8AP 389 A 1 HETATM 15 C C15 8AP . . . E 4 71.077 50.134 8.88 1 61.8 ? C15 8AP 389 A 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 15 #