data_2OHN # _model_server_result.job_id pYP3dCHRYc_Oj01Of71JXQ _model_server_result.datetime_utc '2024-11-24 19:13:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 2OHN # _exptl.entry_id 2OHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OHN _cell.length_a 102.388 _cell.length_b 102.388 _cell.length_c 170.232 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 155 1_555 A SG CYS 376 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 234 A CYS 217 1_555 A SG CYS 399 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 286 A CYS 269 1_555 A SG CYS 336 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 114 n n S C1 DMS sing 115 n n S C2 DMS sing 116 n n C1 H11 DMS sing 117 n n C1 H12 DMS sing 118 n n C1 H13 DMS sing 119 n n C2 H21 DMS sing 120 n n C2 H22 DMS sing 121 n n C2 H23 DMS sing 122 n n # _atom_sites.entry_id 2OHN _atom_sites.fract_transf_matrix[1][1] 0.009767 _atom_sites.fract_transf_matrix[1][2] 0.005639 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 401 IOD IOD . C 2 IOD A 1 402 402 IOD IOD . D 2 IOD A 1 403 403 IOD IOD . E 3 DMS A 1 404 404 DMS DMS . F 4 4FP A 1 405 1 4FP 4FP . G 5 HOH A 1 406 2 HOH HOH . G 5 HOH A 2 407 6 HOH HOH . G 5 HOH A 3 408 7 HOH HOH . G 5 HOH A 4 409 9 HOH HOH . G 5 HOH A 5 410 10 HOH HOH . G 5 HOH A 6 411 11 HOH HOH . G 5 HOH A 7 412 12 HOH HOH . G 5 HOH A 8 413 14 HOH HOH . G 5 HOH A 9 414 15 HOH HOH . G 5 HOH A 10 415 16 HOH HOH . G 5 HOH A 11 416 17 HOH HOH . G 5 HOH A 12 417 18 HOH HOH . G 5 HOH A 13 418 19 HOH HOH . G 5 HOH A 14 419 20 HOH HOH . G 5 HOH A 15 420 21 HOH HOH . G 5 HOH A 16 421 22 HOH HOH . G 5 HOH A 17 422 23 HOH HOH . G 5 HOH A 18 423 24 HOH HOH . G 5 HOH A 19 424 25 HOH HOH . G 5 HOH A 20 425 26 HOH HOH . G 5 HOH A 21 426 27 HOH HOH . G 5 HOH A 22 427 28 HOH HOH . G 5 HOH A 23 428 29 HOH HOH . G 5 HOH A 24 429 30 HOH HOH . G 5 HOH A 25 430 33 HOH HOH . G 5 HOH A 26 431 34 HOH HOH . G 5 HOH A 27 432 35 HOH HOH . G 5 HOH A 28 433 36 HOH HOH . G 5 HOH A 29 434 37 HOH HOH . G 5 HOH A 30 435 38 HOH HOH . G 5 HOH A 31 436 39 HOH HOH . G 5 HOH A 32 437 40 HOH HOH . G 5 HOH A 33 438 41 HOH HOH . G 5 HOH A 34 439 42 HOH HOH . G 5 HOH A 35 440 43 HOH HOH . G 5 HOH A 36 441 44 HOH HOH . G 5 HOH A 37 442 45 HOH HOH . G 5 HOH A 38 443 46 HOH HOH . G 5 HOH A 39 444 47 HOH HOH . G 5 HOH A 40 445 48 HOH HOH . G 5 HOH A 41 446 49 HOH HOH . G 5 HOH A 42 447 50 HOH HOH . G 5 HOH A 43 448 51 HOH HOH . G 5 HOH A 44 449 52 HOH HOH . G 5 HOH A 45 450 53 HOH HOH . G 5 HOH A 46 451 54 HOH HOH . G 5 HOH A 47 452 55 HOH HOH . G 5 HOH A 48 453 57 HOH HOH . G 5 HOH A 49 454 58 HOH HOH . G 5 HOH A 50 455 60 HOH HOH . G 5 HOH A 51 456 61 HOH HOH . G 5 HOH A 52 457 62 HOH HOH . G 5 HOH A 53 458 65 HOH HOH . G 5 HOH A 54 459 66 HOH HOH . G 5 HOH A 55 460 67 HOH HOH . G 5 HOH A 56 461 68 HOH HOH . G 5 HOH A 57 462 69 HOH HOH . G 5 HOH A 58 463 70 HOH HOH . G 5 HOH A 59 464 71 HOH HOH . G 5 HOH A 60 465 74 HOH HOH . G 5 HOH A 61 466 76 HOH HOH . G 5 HOH A 62 467 77 HOH HOH . G 5 HOH A 63 468 79 HOH HOH . G 5 HOH A 64 469 80 HOH HOH . G 5 HOH A 65 470 81 HOH HOH . G 5 HOH A 66 471 82 HOH HOH . G 5 HOH A 67 472 83 HOH HOH . G 5 HOH A 68 473 84 HOH HOH . G 5 HOH A 69 474 85 HOH HOH . G 5 HOH A 70 475 86 HOH HOH . G 5 HOH A 71 476 87 HOH HOH . G 5 HOH A 72 477 88 HOH HOH . G 5 HOH A 73 478 89 HOH HOH . G 5 HOH A 74 479 90 HOH HOH . G 5 HOH A 75 480 92 HOH HOH . G 5 HOH A 76 481 93 HOH HOH . G 5 HOH A 77 482 95 HOH HOH . G 5 HOH A 78 483 96 HOH HOH . G 5 HOH A 79 484 98 HOH HOH . G 5 HOH A 80 485 100 HOH HOH . G 5 HOH A 81 486 103 HOH HOH . G 5 HOH A 82 487 105 HOH HOH . G 5 HOH A 83 488 106 HOH HOH . G 5 HOH A 84 489 108 HOH HOH . G 5 HOH A 85 490 109 HOH HOH . G 5 HOH A 86 491 113 HOH HOH . G 5 HOH A 87 492 114 HOH HOH . G 5 HOH A 88 493 116 HOH HOH . G 5 HOH A 89 494 117 HOH HOH . G 5 HOH A 90 495 118 HOH HOH . G 5 HOH A 91 496 119 HOH HOH . G 5 HOH A 92 497 120 HOH HOH . G 5 HOH A 93 498 121 HOH HOH . G 5 HOH A 94 499 122 HOH HOH . G 5 HOH A 95 500 123 HOH HOH . G 5 HOH A 96 501 124 HOH HOH . G 5 HOH A 97 502 125 HOH HOH . G 5 HOH A 98 503 126 HOH HOH . G 5 HOH A 99 504 127 HOH HOH . G 5 HOH A 100 505 128 HOH HOH . G 5 HOH A 101 506 129 HOH HOH . G 5 HOH A 102 507 130 HOH HOH . G 5 HOH A 103 508 131 HOH HOH . G 5 HOH A 104 509 134 HOH HOH . G 5 HOH A 105 510 136 HOH HOH . G 5 HOH A 106 511 138 HOH HOH . G 5 HOH A 107 512 139 HOH HOH . G 5 HOH A 108 513 141 HOH HOH . G 5 HOH A 109 514 142 HOH HOH . G 5 HOH A 110 515 144 HOH HOH . G 5 HOH A 111 516 146 HOH HOH . G 5 HOH A 112 517 147 HOH HOH . G 5 HOH A 113 518 148 HOH HOH . G 5 HOH A 114 519 149 HOH HOH . G 5 HOH A 115 520 150 HOH HOH . G 5 HOH A 116 521 154 HOH HOH . G 5 HOH A 117 522 155 HOH HOH . G 5 HOH A 118 523 157 HOH HOH . G 5 HOH A 119 524 158 HOH HOH . G 5 HOH A 120 525 160 HOH HOH . G 5 HOH A 121 526 161 HOH HOH . G 5 HOH A 122 527 164 HOH HOH . G 5 HOH A 123 528 165 HOH HOH . G 5 HOH A 124 529 167 HOH HOH . G 5 HOH A 125 530 168 HOH HOH . G 5 HOH A 126 531 169 HOH HOH . G 5 HOH A 127 532 170 HOH HOH . G 5 HOH A 128 533 171 HOH HOH . G 5 HOH A 129 534 172 HOH HOH . G 5 HOH A 130 535 174 HOH HOH . G 5 HOH A 131 536 176 HOH HOH . G 5 HOH A 132 537 180 HOH HOH . G 5 HOH A 133 538 181 HOH HOH . G 5 HOH A 134 539 182 HOH HOH . G 5 HOH A 135 540 186 HOH HOH . G 5 HOH A 136 541 187 HOH HOH . G 5 HOH A 137 542 189 HOH HOH . G 5 HOH A 138 543 190 HOH HOH . G 5 HOH A 139 544 192 HOH HOH . G 5 HOH A 140 545 193 HOH HOH . G 5 HOH A 141 546 194 HOH HOH . G 5 HOH A 142 547 198 HOH HOH . G 5 HOH A 143 548 200 HOH HOH . G 5 HOH A 144 549 201 HOH HOH . G 5 HOH A 145 550 202 HOH HOH . G 5 HOH A 146 551 204 HOH HOH . G 5 HOH A 147 552 205 HOH HOH . G 5 HOH A 148 553 206 HOH HOH . G 5 HOH A 149 554 207 HOH HOH . G 5 HOH A 150 555 208 HOH HOH . G 5 HOH A 151 556 209 HOH HOH . G 5 HOH A 152 557 210 HOH HOH . G 5 HOH A 153 558 214 HOH HOH . G 5 HOH A 154 559 216 HOH HOH . G 5 HOH A 155 560 218 HOH HOH . G 5 HOH A 156 561 219 HOH HOH . G 5 HOH A 157 562 220 HOH HOH . G 5 HOH A 158 563 221 HOH HOH . G 5 HOH A 159 564 223 HOH HOH . G 5 HOH A 160 565 226 HOH HOH . G 5 HOH A 161 566 227 HOH HOH . G 5 HOH A 162 567 229 HOH HOH . G 5 HOH A 163 568 230 HOH HOH . G 5 HOH A 164 569 231 HOH HOH . G 5 HOH A 165 570 232 HOH HOH . G 5 HOH A 166 571 233 HOH HOH . G 5 HOH A 167 572 234 HOH HOH . G 5 HOH A 168 573 236 HOH HOH . G 5 HOH A 169 574 238 HOH HOH . G 5 HOH A 170 575 239 HOH HOH . G 5 HOH A 171 576 241 HOH HOH . G 5 HOH A 172 577 242 HOH HOH . G 5 HOH A 173 578 243 HOH HOH . G 5 HOH A 174 579 245 HOH HOH . G 5 HOH A 175 580 246 HOH HOH . G 5 HOH A 176 581 249 HOH HOH . G 5 HOH A 177 582 250 HOH HOH . G 5 HOH A 178 583 251 HOH HOH . G 5 HOH A 179 584 252 HOH HOH . G 5 HOH A 180 585 253 HOH HOH . G 5 HOH A 181 586 254 HOH HOH . G 5 HOH A 182 587 255 HOH HOH . G 5 HOH A 183 588 256 HOH HOH . G 5 HOH A 184 589 257 HOH HOH . G 5 HOH A 185 590 258 HOH HOH . G 5 HOH A 186 591 259 HOH HOH . G 5 HOH A 187 592 260 HOH HOH . G 5 HOH A 188 593 261 HOH HOH . G 5 HOH A 189 594 263 HOH HOH . G 5 HOH A 190 595 264 HOH HOH . G 5 HOH A 191 596 265 HOH HOH . G 5 HOH A 192 597 266 HOH HOH . G 5 HOH A 193 598 267 HOH HOH . G 5 HOH A 194 599 268 HOH HOH . G 5 HOH A 195 600 269 HOH HOH . G 5 HOH A 196 601 270 HOH HOH . G 5 HOH A 197 602 271 HOH HOH . G 5 HOH A 198 603 272 HOH HOH . G 5 HOH A 199 604 273 HOH HOH . G 5 HOH A 200 605 274 HOH HOH . G 5 HOH A 201 606 275 HOH HOH . G 5 HOH A 202 607 277 HOH HOH . G 5 HOH A 203 608 278 HOH HOH . G 5 HOH A 204 609 279 HOH HOH . G 5 HOH A 205 610 281 HOH HOH . G 5 HOH A 206 611 282 HOH HOH . G 5 HOH A 207 612 283 HOH HOH . G 5 HOH A 208 613 284 HOH HOH . G 5 HOH A 209 614 285 HOH HOH . G 5 HOH A 210 615 286 HOH HOH . G 5 HOH A 211 616 287 HOH HOH . G 5 HOH A 212 617 288 HOH HOH . G 5 HOH A 213 618 301 HOH HOH . G 5 HOH A 214 619 302 HOH HOH . G 5 HOH A 215 620 303 HOH HOH . G 5 HOH A 216 621 304 HOH HOH . G 5 HOH A 217 622 305 HOH HOH . G 5 HOH A 218 623 306 HOH HOH . G 5 HOH A 219 624 307 HOH HOH . G 5 HOH A 220 625 308 HOH HOH . G 5 HOH A 221 626 309 HOH HOH . G 5 HOH A 222 627 310 HOH HOH . G 5 HOH A 223 628 312 HOH HOH . G 5 HOH A 224 629 313 HOH HOH . G 5 HOH A 225 630 315 HOH HOH . G 5 HOH A 226 631 316 HOH HOH . G 5 HOH A 227 632 317 HOH HOH . G 5 HOH A 228 633 318 HOH HOH . G 5 HOH A 229 634 319 HOH HOH . G 5 HOH A 230 635 322 HOH HOH . G 5 HOH A 231 636 324 HOH HOH . G 5 HOH A 232 637 325 HOH HOH . G 5 HOH A 233 638 326 HOH HOH . G 5 HOH A 234 639 327 HOH HOH . G 5 HOH A 235 640 334 HOH HOH . G 5 HOH A 236 641 342 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 3 48.357 34.023 -17.829 1 65.78 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 3 47.654 32.385 -17.508 1 66.45 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 3 47.749 35.228 -16.626 1 63.72 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 3 50.158 34.036 -17.473 1 69.45 ? C2 DMS 404 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #