data_2OHQ # _model_server_result.job_id vA53yj8nNzmgHuTmb5xCTw _model_server_result.datetime_utc '2024-11-28 19:07:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 2OHQ # _exptl.entry_id 2OHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OHQ _cell.length_a 102.688 _cell.length_b 102.688 _cell.length_c 169.064 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 155 1_555 A SG CYS 376 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 234 A CYS 217 1_555 A SG CYS 399 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 286 A CYS 269 1_555 A SG CYS 336 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 2OHQ _atom_sites.fract_transf_matrix[1][1] 0.009738 _atom_sites.fract_transf_matrix[1][2] 0.005622 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 401 IOD IOD . C 2 IOD A 1 402 402 IOD IOD . D 3 DMS A 1 403 403 DMS DMS . E 4 7IP A 1 404 1 7IP 7IP . F 5 GOL A 1 405 404 GOL GOL . G 6 HOH A 1 406 2 HOH HOH . G 6 HOH A 2 407 3 HOH HOH . G 6 HOH A 3 408 4 HOH HOH . G 6 HOH A 4 409 5 HOH HOH . G 6 HOH A 5 410 6 HOH HOH . G 6 HOH A 6 411 7 HOH HOH . G 6 HOH A 7 412 8 HOH HOH . G 6 HOH A 8 413 9 HOH HOH . G 6 HOH A 9 414 10 HOH HOH . G 6 HOH A 10 415 11 HOH HOH . G 6 HOH A 11 416 12 HOH HOH . G 6 HOH A 12 417 13 HOH HOH . G 6 HOH A 13 418 14 HOH HOH . G 6 HOH A 14 419 15 HOH HOH . G 6 HOH A 15 420 16 HOH HOH . G 6 HOH A 16 421 17 HOH HOH . G 6 HOH A 17 422 18 HOH HOH . G 6 HOH A 18 423 19 HOH HOH . G 6 HOH A 19 424 20 HOH HOH . G 6 HOH A 20 425 21 HOH HOH . G 6 HOH A 21 426 22 HOH HOH . G 6 HOH A 22 427 23 HOH HOH . G 6 HOH A 23 428 24 HOH HOH . G 6 HOH A 24 429 25 HOH HOH . G 6 HOH A 25 430 26 HOH HOH . G 6 HOH A 26 431 27 HOH HOH . G 6 HOH A 27 432 29 HOH HOH . G 6 HOH A 28 433 30 HOH HOH . G 6 HOH A 29 434 31 HOH HOH . G 6 HOH A 30 435 33 HOH HOH . G 6 HOH A 31 436 34 HOH HOH . G 6 HOH A 32 437 35 HOH HOH . G 6 HOH A 33 438 36 HOH HOH . G 6 HOH A 34 439 37 HOH HOH . G 6 HOH A 35 440 38 HOH HOH . G 6 HOH A 36 441 39 HOH HOH . G 6 HOH A 37 442 40 HOH HOH . G 6 HOH A 38 443 41 HOH HOH . G 6 HOH A 39 444 42 HOH HOH . G 6 HOH A 40 445 43 HOH HOH . G 6 HOH A 41 446 44 HOH HOH . G 6 HOH A 42 447 45 HOH HOH . G 6 HOH A 43 448 46 HOH HOH . G 6 HOH A 44 449 47 HOH HOH . G 6 HOH A 45 450 48 HOH HOH . G 6 HOH A 46 451 49 HOH HOH . G 6 HOH A 47 452 51 HOH HOH . G 6 HOH A 48 453 52 HOH HOH . G 6 HOH A 49 454 53 HOH HOH . G 6 HOH A 50 455 54 HOH HOH . G 6 HOH A 51 456 55 HOH HOH . G 6 HOH A 52 457 56 HOH HOH . G 6 HOH A 53 458 57 HOH HOH . G 6 HOH A 54 459 58 HOH HOH . G 6 HOH A 55 460 59 HOH HOH . G 6 HOH A 56 461 60 HOH HOH . G 6 HOH A 57 462 61 HOH HOH . G 6 HOH A 58 463 62 HOH HOH . G 6 HOH A 59 464 63 HOH HOH . G 6 HOH A 60 465 65 HOH HOH . G 6 HOH A 61 466 66 HOH HOH . G 6 HOH A 62 467 67 HOH HOH . G 6 HOH A 63 468 68 HOH HOH . G 6 HOH A 64 469 69 HOH HOH . G 6 HOH A 65 470 70 HOH HOH . G 6 HOH A 66 471 71 HOH HOH . G 6 HOH A 67 472 72 HOH HOH . G 6 HOH A 68 473 74 HOH HOH . G 6 HOH A 69 474 75 HOH HOH . G 6 HOH A 70 475 76 HOH HOH . G 6 HOH A 71 476 77 HOH HOH . G 6 HOH A 72 477 78 HOH HOH . G 6 HOH A 73 478 79 HOH HOH . G 6 HOH A 74 479 81 HOH HOH . G 6 HOH A 75 480 82 HOH HOH . G 6 HOH A 76 481 83 HOH HOH . G 6 HOH A 77 482 84 HOH HOH . G 6 HOH A 78 483 86 HOH HOH . G 6 HOH A 79 484 87 HOH HOH . G 6 HOH A 80 485 88 HOH HOH . G 6 HOH A 81 486 89 HOH HOH . G 6 HOH A 82 487 90 HOH HOH . G 6 HOH A 83 488 91 HOH HOH . G 6 HOH A 84 489 92 HOH HOH . G 6 HOH A 85 490 93 HOH HOH . G 6 HOH A 86 491 94 HOH HOH . G 6 HOH A 87 492 95 HOH HOH . G 6 HOH A 88 493 97 HOH HOH . G 6 HOH A 89 494 98 HOH HOH . G 6 HOH A 90 495 99 HOH HOH . G 6 HOH A 91 496 100 HOH HOH . G 6 HOH A 92 497 101 HOH HOH . G 6 HOH A 93 498 102 HOH HOH . G 6 HOH A 94 499 103 HOH HOH . G 6 HOH A 95 500 104 HOH HOH . G 6 HOH A 96 501 105 HOH HOH . G 6 HOH A 97 502 106 HOH HOH . G 6 HOH A 98 503 107 HOH HOH . G 6 HOH A 99 504 108 HOH HOH . G 6 HOH A 100 505 111 HOH HOH . G 6 HOH A 101 506 112 HOH HOH . G 6 HOH A 102 507 114 HOH HOH . G 6 HOH A 103 508 115 HOH HOH . G 6 HOH A 104 509 116 HOH HOH . G 6 HOH A 105 510 121 HOH HOH . G 6 HOH A 106 511 124 HOH HOH . G 6 HOH A 107 512 126 HOH HOH . G 6 HOH A 108 513 127 HOH HOH . G 6 HOH A 109 514 128 HOH HOH . G 6 HOH A 110 515 133 HOH HOH . G 6 HOH A 111 516 136 HOH HOH . G 6 HOH A 112 517 138 HOH HOH . G 6 HOH A 113 518 139 HOH HOH . G 6 HOH A 114 519 141 HOH HOH . G 6 HOH A 115 520 142 HOH HOH . G 6 HOH A 116 521 143 HOH HOH . G 6 HOH A 117 522 144 HOH HOH . G 6 HOH A 118 523 145 HOH HOH . G 6 HOH A 119 524 146 HOH HOH . G 6 HOH A 120 525 147 HOH HOH . G 6 HOH A 121 526 148 HOH HOH . G 6 HOH A 122 527 153 HOH HOH . G 6 HOH A 123 528 154 HOH HOH . G 6 HOH A 124 529 156 HOH HOH . G 6 HOH A 125 530 158 HOH HOH . G 6 HOH A 126 531 159 HOH HOH . G 6 HOH A 127 532 160 HOH HOH . G 6 HOH A 128 533 161 HOH HOH . G 6 HOH A 129 534 163 HOH HOH . G 6 HOH A 130 535 164 HOH HOH . G 6 HOH A 131 536 167 HOH HOH . G 6 HOH A 132 537 169 HOH HOH . G 6 HOH A 133 538 171 HOH HOH . G 6 HOH A 134 539 172 HOH HOH . G 6 HOH A 135 540 173 HOH HOH . G 6 HOH A 136 541 174 HOH HOH . G 6 HOH A 137 542 176 HOH HOH . G 6 HOH A 138 543 178 HOH HOH . G 6 HOH A 139 544 179 HOH HOH . G 6 HOH A 140 545 180 HOH HOH . G 6 HOH A 141 546 181 HOH HOH . G 6 HOH A 142 547 183 HOH HOH . G 6 HOH A 143 548 186 HOH HOH . G 6 HOH A 144 549 188 HOH HOH . G 6 HOH A 145 550 189 HOH HOH . G 6 HOH A 146 551 190 HOH HOH . G 6 HOH A 147 552 191 HOH HOH . G 6 HOH A 148 553 196 HOH HOH . G 6 HOH A 149 554 198 HOH HOH . G 6 HOH A 150 555 199 HOH HOH . G 6 HOH A 151 556 200 HOH HOH . G 6 HOH A 152 557 204 HOH HOH . G 6 HOH A 153 558 205 HOH HOH . G 6 HOH A 154 559 206 HOH HOH . G 6 HOH A 155 560 207 HOH HOH . G 6 HOH A 156 561 212 HOH HOH . G 6 HOH A 157 562 213 HOH HOH . G 6 HOH A 158 563 214 HOH HOH . G 6 HOH A 159 564 215 HOH HOH . G 6 HOH A 160 565 221 HOH HOH . G 6 HOH A 161 566 222 HOH HOH . G 6 HOH A 162 567 223 HOH HOH . G 6 HOH A 163 568 224 HOH HOH . G 6 HOH A 164 569 225 HOH HOH . G 6 HOH A 165 570 226 HOH HOH . G 6 HOH A 166 571 227 HOH HOH . G 6 HOH A 167 572 229 HOH HOH . G 6 HOH A 168 573 231 HOH HOH . G 6 HOH A 169 574 232 HOH HOH . G 6 HOH A 170 575 233 HOH HOH . G 6 HOH A 171 576 235 HOH HOH . G 6 HOH A 172 577 236 HOH HOH . G 6 HOH A 173 578 239 HOH HOH . G 6 HOH A 174 579 240 HOH HOH . G 6 HOH A 175 580 241 HOH HOH . G 6 HOH A 176 581 246 HOH HOH . G 6 HOH A 177 582 247 HOH HOH . G 6 HOH A 178 583 248 HOH HOH . G 6 HOH A 179 584 249 HOH HOH . G 6 HOH A 180 585 250 HOH HOH . G 6 HOH A 181 586 252 HOH HOH . G 6 HOH A 182 587 253 HOH HOH . G 6 HOH A 183 588 255 HOH HOH . G 6 HOH A 184 589 257 HOH HOH . G 6 HOH A 185 590 258 HOH HOH . G 6 HOH A 186 591 259 HOH HOH . G 6 HOH A 187 592 262 HOH HOH . G 6 HOH A 188 593 265 HOH HOH . G 6 HOH A 189 594 266 HOH HOH . G 6 HOH A 190 595 268 HOH HOH . G 6 HOH A 191 596 271 HOH HOH . G 6 HOH A 192 597 273 HOH HOH . G 6 HOH A 193 598 274 HOH HOH . G 6 HOH A 194 599 275 HOH HOH . G 6 HOH A 195 600 276 HOH HOH . G 6 HOH A 196 601 277 HOH HOH . G 6 HOH A 197 602 278 HOH HOH . G 6 HOH A 198 603 279 HOH HOH . G 6 HOH A 199 604 282 HOH HOH . G 6 HOH A 200 605 285 HOH HOH . G 6 HOH A 201 606 286 HOH HOH . G 6 HOH A 202 607 289 HOH HOH . G 6 HOH A 203 608 290 HOH HOH . G 6 HOH A 204 609 292 HOH HOH . G 6 HOH A 205 610 293 HOH HOH . G 6 HOH A 206 611 294 HOH HOH . G 6 HOH A 207 612 297 HOH HOH . G 6 HOH A 208 613 303 HOH HOH . G 6 HOH A 209 614 305 HOH HOH . G 6 HOH A 210 615 307 HOH HOH . G 6 HOH A 211 616 308 HOH HOH . G 6 HOH A 212 617 310 HOH HOH . G 6 HOH A 213 618 311 HOH HOH . G 6 HOH A 214 619 313 HOH HOH . G 6 HOH A 215 620 316 HOH HOH . G 6 HOH A 216 621 318 HOH HOH . G 6 HOH A 217 622 320 HOH HOH . G 6 HOH A 218 623 327 HOH HOH . G 6 HOH A 219 624 331 HOH HOH . G 6 HOH A 220 625 332 HOH HOH . G 6 HOH A 221 626 333 HOH HOH . G 6 HOH A 222 627 334 HOH HOH . G 6 HOH A 223 628 335 HOH HOH . G 6 HOH A 224 629 338 HOH HOH . G 6 HOH A 225 630 340 HOH HOH . G 6 HOH A 226 631 341 HOH HOH . G 6 HOH A 227 632 342 HOH HOH . G 6 HOH A 228 633 345 HOH HOH . G 6 HOH A 229 634 347 HOH HOH . G 6 HOH A 230 635 348 HOH HOH . G 6 HOH A 231 636 358 HOH HOH . G 6 HOH A 232 637 359 HOH HOH . G 6 HOH A 233 638 362 HOH HOH . G 6 HOH A 234 639 363 HOH HOH . G 6 HOH A 235 640 365 HOH HOH . G 6 HOH A 236 641 367 HOH HOH . G 6 HOH A 237 642 371 HOH HOH . G 6 HOH A 238 643 372 HOH HOH . G 6 HOH A 239 644 373 HOH HOH . G 6 HOH A 240 645 374 HOH HOH . G 6 HOH A 241 646 375 HOH HOH . G 6 HOH A 242 647 376 HOH HOH . G 6 HOH A 243 648 377 HOH HOH . G 6 HOH A 244 649 378 HOH HOH . G 6 HOH A 245 650 379 HOH HOH . G 6 HOH A 246 651 380 HOH HOH . G 6 HOH A 247 652 381 HOH HOH . G 6 HOH A 248 653 382 HOH HOH . G 6 HOH A 249 654 383 HOH HOH . G 6 HOH A 250 655 384 HOH HOH . G 6 HOH A 251 656 385 HOH HOH . G 6 HOH A 252 657 386 HOH HOH . G 6 HOH A 253 658 387 HOH HOH . G 6 HOH A 254 659 388 HOH HOH . G 6 HOH A 255 660 389 HOH HOH . G 6 HOH A 256 661 390 HOH HOH . G 6 HOH A 257 662 391 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 72.831 44.246 -0.672 1 52.14 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 5 72.888 43.168 0.205 1 50.88 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 5 73.711 44.022 -1.871 1 53.34 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 5 72.867 43.612 -2.899 1 56.07 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 5 74.447 45.33 -2.162 1 51.91 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 5 75.188 45.279 -3.362 1 60.26 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #