data_2OHU # _model_server_result.job_id FCx3b4yJ0OTV7E8hocxvWg _model_server_result.datetime_utc '2024-11-25 02:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":390}' # _entry.id 2OHU # _exptl.entry_id 2OHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.494 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~3~-[5-(1H-INDOL-6-YL)-2-(PYRIDIN-2-YLMETHOXY)BENZYL]PYRIDINE-2,3-DIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OHU _cell.length_a 102.162 _cell.length_b 102.162 _cell.length_c 168.385 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 155 1_555 A SG CYS 376 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 234 A CYS 217 1_555 A SG CYS 399 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 286 A CYS 269 1_555 A SG CYS 336 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C26 H23 N5 O' _chem_comp.formula_weight 421.494 _chem_comp.id IP7 _chem_comp.mon_nstd_flag . _chem_comp.name N~3~-[5-(1H-INDOL-6-YL)-2-(PYRIDIN-2-YLMETHOXY)BENZYL]PYRIDINE-2,3-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IP7 sing 182 n n N1 HN11 IP7 sing 183 n n N1 HN12 IP7 sing 184 n n C2 N3 IP7 doub 185 n y C2 C7 IP7 sing 186 n y N3 C4 IP7 sing 187 n y C4 C5 IP7 doub 188 n y C4 H4 IP7 sing 189 n n C5 C6 IP7 sing 190 n y C5 H5 IP7 sing 191 n n C6 C7 IP7 doub 192 n y C6 H6 IP7 sing 193 n n C7 N8 IP7 sing 194 n n N8 C9 IP7 sing 195 n n N8 HN8 IP7 sing 196 n n C9 C10 IP7 sing 197 n n C9 H91 IP7 sing 198 n n C9 H92 IP7 sing 199 n n C10 C11 IP7 sing 200 n y C10 C15 IP7 doub 201 n y C11 C12 IP7 doub 202 n y C11 H11 IP7 sing 203 n n C12 C24 IP7 sing 204 n y C12 C13 IP7 sing 205 n y C13 C14 IP7 doub 206 n y C13 H13 IP7 sing 207 n n C14 C15 IP7 sing 208 n y C14 H14 IP7 sing 209 n n C15 O16 IP7 sing 210 n n O16 C17 IP7 sing 211 n n C17 C18 IP7 sing 212 n n C17 H171 IP7 sing 213 n n C17 H172 IP7 sing 214 n n C18 N23 IP7 doub 215 n y C18 C19 IP7 sing 216 n y C19 C20 IP7 doub 217 n y C19 H19 IP7 sing 218 n n C20 C21 IP7 sing 219 n y C20 H20 IP7 sing 220 n n C21 C22 IP7 doub 221 n y C21 H21 IP7 sing 222 n n C22 N23 IP7 sing 223 n y C22 H22 IP7 sing 224 n n C24 C32 IP7 doub 225 n y C24 C25 IP7 sing 226 n y C25 C26 IP7 doub 227 n y C25 H25 IP7 sing 228 n n C26 C27 IP7 sing 229 n y C26 H26 IP7 sing 230 n n C27 C28 IP7 sing 231 n y C27 C31 IP7 doub 232 n y C28 C29 IP7 doub 233 n y C28 H28 IP7 sing 234 n n C29 N30 IP7 sing 235 n y C29 H29 IP7 sing 236 n n N30 C31 IP7 sing 237 n y N30 HN30 IP7 sing 238 n n C31 C32 IP7 sing 239 n y C32 H32 IP7 sing 240 n n # _atom_sites.entry_id 2OHU _atom_sites.fract_transf_matrix[1][1] 0.009788 _atom_sites.fract_transf_matrix[1][2] 0.005651 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 386 301 IOD IOD . C 2 IOD A 1 387 302 IOD IOD . D 2 IOD A 1 388 303 IOD IOD . E 3 DMS A 1 389 304 DMS DMS . F 4 IP7 A 1 390 1 IP7 IP7 . G 5 HOH A 1 391 2 HOH HOH . G 5 HOH A 2 392 3 HOH HOH . G 5 HOH A 3 393 4 HOH HOH . G 5 HOH A 4 394 5 HOH HOH . G 5 HOH A 5 395 6 HOH HOH . G 5 HOH A 6 396 7 HOH HOH . G 5 HOH A 7 397 8 HOH HOH . G 5 HOH A 8 398 9 HOH HOH . G 5 HOH A 9 399 10 HOH HOH . G 5 HOH A 10 400 11 HOH HOH . G 5 HOH A 11 401 12 HOH HOH . G 5 HOH A 12 402 13 HOH HOH . G 5 HOH A 13 403 15 HOH HOH . G 5 HOH A 14 404 17 HOH HOH . G 5 HOH A 15 405 19 HOH HOH . G 5 HOH A 16 406 21 HOH HOH . G 5 HOH A 17 407 22 HOH HOH . G 5 HOH A 18 408 24 HOH HOH . G 5 HOH A 19 409 25 HOH HOH . G 5 HOH A 20 410 27 HOH HOH . G 5 HOH A 21 411 28 HOH HOH . G 5 HOH A 22 412 29 HOH HOH . G 5 HOH A 23 413 31 HOH HOH . G 5 HOH A 24 414 32 HOH HOH . G 5 HOH A 25 415 33 HOH HOH . G 5 HOH A 26 416 34 HOH HOH . G 5 HOH A 27 417 35 HOH HOH . G 5 HOH A 28 418 36 HOH HOH . G 5 HOH A 29 419 37 HOH HOH . G 5 HOH A 30 420 39 HOH HOH . G 5 HOH A 31 421 40 HOH HOH . G 5 HOH A 32 422 41 HOH HOH . G 5 HOH A 33 423 45 HOH HOH . G 5 HOH A 34 424 46 HOH HOH . G 5 HOH A 35 425 47 HOH HOH . G 5 HOH A 36 426 48 HOH HOH . G 5 HOH A 37 427 49 HOH HOH . G 5 HOH A 38 428 50 HOH HOH . G 5 HOH A 39 429 52 HOH HOH . G 5 HOH A 40 430 53 HOH HOH . G 5 HOH A 41 431 55 HOH HOH . G 5 HOH A 42 432 57 HOH HOH . G 5 HOH A 43 433 59 HOH HOH . G 5 HOH A 44 434 61 HOH HOH . G 5 HOH A 45 435 62 HOH HOH . G 5 HOH A 46 436 65 HOH HOH . G 5 HOH A 47 437 68 HOH HOH . G 5 HOH A 48 438 69 HOH HOH . G 5 HOH A 49 439 71 HOH HOH . G 5 HOH A 50 440 73 HOH HOH . G 5 HOH A 51 441 74 HOH HOH . G 5 HOH A 52 442 75 HOH HOH . G 5 HOH A 53 443 76 HOH HOH . G 5 HOH A 54 444 79 HOH HOH . G 5 HOH A 55 445 80 HOH HOH . G 5 HOH A 56 446 81 HOH HOH . G 5 HOH A 57 447 85 HOH HOH . G 5 HOH A 58 448 86 HOH HOH . G 5 HOH A 59 449 87 HOH HOH . G 5 HOH A 60 450 90 HOH HOH . G 5 HOH A 61 451 91 HOH HOH . G 5 HOH A 62 452 92 HOH HOH . G 5 HOH A 63 453 94 HOH HOH . G 5 HOH A 64 454 96 HOH HOH . G 5 HOH A 65 455 99 HOH HOH . G 5 HOH A 66 456 100 HOH HOH . G 5 HOH A 67 457 101 HOH HOH . G 5 HOH A 68 458 102 HOH HOH . G 5 HOH A 69 459 112 HOH HOH . G 5 HOH A 70 460 114 HOH HOH . G 5 HOH A 71 461 116 HOH HOH . G 5 HOH A 72 462 117 HOH HOH . G 5 HOH A 73 463 118 HOH HOH . G 5 HOH A 74 464 119 HOH HOH . G 5 HOH A 75 465 120 HOH HOH . G 5 HOH A 76 466 122 HOH HOH . G 5 HOH A 77 467 124 HOH HOH . G 5 HOH A 78 468 126 HOH HOH . G 5 HOH A 79 469 127 HOH HOH . G 5 HOH A 80 470 128 HOH HOH . G 5 HOH A 81 471 130 HOH HOH . G 5 HOH A 82 472 131 HOH HOH . G 5 HOH A 83 473 133 HOH HOH . G 5 HOH A 84 474 138 HOH HOH . G 5 HOH A 85 475 139 HOH HOH . G 5 HOH A 86 476 142 HOH HOH . G 5 HOH A 87 477 143 HOH HOH . G 5 HOH A 88 478 146 HOH HOH . G 5 HOH A 89 479 151 HOH HOH . G 5 HOH A 90 480 154 HOH HOH . G 5 HOH A 91 481 157 HOH HOH . G 5 HOH A 92 482 162 HOH HOH . G 5 HOH A 93 483 165 HOH HOH . G 5 HOH A 94 484 166 HOH HOH . G 5 HOH A 95 485 173 HOH HOH . G 5 HOH A 96 486 175 HOH HOH . G 5 HOH A 97 487 180 HOH HOH . G 5 HOH A 98 488 181 HOH HOH . G 5 HOH A 99 489 183 HOH HOH . G 5 HOH A 100 490 184 HOH HOH . G 5 HOH A 101 491 185 HOH HOH . G 5 HOH A 102 492 186 HOH HOH . G 5 HOH A 103 493 188 HOH HOH . G 5 HOH A 104 494 190 HOH HOH . G 5 HOH A 105 495 191 HOH HOH . G 5 HOH A 106 496 192 HOH HOH . G 5 HOH A 107 497 194 HOH HOH . G 5 HOH A 108 498 195 HOH HOH . G 5 HOH A 109 499 196 HOH HOH . G 5 HOH A 110 500 200 HOH HOH . G 5 HOH A 111 501 201 HOH HOH . G 5 HOH A 112 502 202 HOH HOH . G 5 HOH A 113 503 203 HOH HOH . G 5 HOH A 114 504 204 HOH HOH . G 5 HOH A 115 505 205 HOH HOH . G 5 HOH A 116 506 206 HOH HOH . G 5 HOH A 117 507 207 HOH HOH . G 5 HOH A 118 508 209 HOH HOH . G 5 HOH A 119 509 213 HOH HOH . G 5 HOH A 120 510 214 HOH HOH . G 5 HOH A 121 511 216 HOH HOH . G 5 HOH A 122 512 218 HOH HOH . G 5 HOH A 123 513 219 HOH HOH . G 5 HOH A 124 514 221 HOH HOH . G 5 HOH A 125 515 224 HOH HOH . G 5 HOH A 126 516 226 HOH HOH . G 5 HOH A 127 517 227 HOH HOH . G 5 HOH A 128 518 230 HOH HOH . G 5 HOH A 129 519 231 HOH HOH . G 5 HOH A 130 520 232 HOH HOH . G 5 HOH A 131 521 235 HOH HOH . G 5 HOH A 132 522 238 HOH HOH . G 5 HOH A 133 523 241 HOH HOH . G 5 HOH A 134 524 248 HOH HOH . G 5 HOH A 135 525 257 HOH HOH . G 5 HOH A 136 526 258 HOH HOH . G 5 HOH A 137 527 261 HOH HOH . G 5 HOH A 138 528 262 HOH HOH . G 5 HOH A 139 529 263 HOH HOH . G 5 HOH A 140 530 264 HOH HOH . G 5 HOH A 141 531 267 HOH HOH . G 5 HOH A 142 532 268 HOH HOH . G 5 HOH A 143 533 270 HOH HOH . G 5 HOH A 144 534 272 HOH HOH . G 5 HOH A 145 535 274 HOH HOH . G 5 HOH A 146 536 275 HOH HOH . G 5 HOH A 147 537 276 HOH HOH . G 5 HOH A 148 538 277 HOH HOH . G 5 HOH A 149 539 278 HOH HOH . G 5 HOH A 150 540 279 HOH HOH . G 5 HOH A 151 541 280 HOH HOH . G 5 HOH A 152 542 281 HOH HOH . G 5 HOH A 153 543 282 HOH HOH . G 5 HOH A 154 544 283 HOH HOH . G 5 HOH A 155 545 284 HOH HOH . G 5 HOH A 156 546 285 HOH HOH . G 5 HOH A 157 547 286 HOH HOH . G 5 HOH A 158 548 287 HOH HOH . G 5 HOH A 159 549 288 HOH HOH . G 5 HOH A 160 550 289 HOH HOH . G 5 HOH A 161 551 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IP7 . . . F 4 66.036 48.611 5.949 1 45.85 ? N1 IP7 390 A 1 HETATM 2 C C2 IP7 . . . F 4 65.828 48.107 7.225 1 54.91 ? C2 IP7 390 A 1 HETATM 3 N N3 IP7 . . . F 4 65.229 46.925 7.377 1 57.44 ? N3 IP7 390 A 1 HETATM 4 C C4 IP7 . . . F 4 65.012 46.385 8.574 1 60.5 ? C4 IP7 390 A 1 HETATM 5 C C5 IP7 . . . F 4 65.399 47.046 9.73 1 57.25 ? C5 IP7 390 A 1 HETATM 6 C C6 IP7 . . . F 4 66.028 48.285 9.622 1 56.58 ? C6 IP7 390 A 1 HETATM 7 C C7 IP7 . . . F 4 66.247 48.845 8.354 1 55.6 ? C7 IP7 390 A 1 HETATM 8 N N8 IP7 . . . F 4 66.901 50.087 8.203 1 51.6 ? N8 IP7 390 A 1 HETATM 9 C C9 IP7 . . . F 4 67.559 50.732 9.344 1 49.01 ? C9 IP7 390 A 1 HETATM 10 C C10 IP7 . . . F 4 68.854 50.056 9.763 1 51.54 ? C10 IP7 390 A 1 HETATM 11 C C11 IP7 . . . F 4 69.779 49.724 8.784 1 49.77 ? C11 IP7 390 A 1 HETATM 12 C C12 IP7 . . . F 4 70.99 49.12 9.136 1 48.46 ? C12 IP7 390 A 1 HETATM 13 C C13 IP7 . . . F 4 71.279 48.826 10.491 1 53.42 ? C13 IP7 390 A 1 HETATM 14 C C14 IP7 . . . F 4 70.351 49.147 11.476 1 52.2 ? C14 IP7 390 A 1 HETATM 15 C C15 IP7 . . . F 4 69.136 49.763 11.122 1 53.44 ? C15 IP7 390 A 1 HETATM 16 O O16 IP7 . . . F 4 68.238 50.074 12.109 1 53.2 ? O16 IP7 390 A 1 HETATM 17 C C17 IP7 . . . F 4 68.589 51.346 12.668 1 49.78 ? C17 IP7 390 A 1 HETATM 18 C C18 IP7 . . . F 4 67.732 52.416 12.036 1 51.76 ? C18 IP7 390 A 1 HETATM 19 C C19 IP7 . . . F 4 66.38 52.519 12.387 1 53.36 ? C19 IP7 390 A 1 HETATM 20 C C20 IP7 . . . F 4 65.584 53.511 11.802 1 46.96 ? C20 IP7 390 A 1 HETATM 21 C C21 IP7 . . . F 4 66.209 54.367 10.891 1 49.9 ? C21 IP7 390 A 1 HETATM 22 C C22 IP7 . . . F 4 67.555 54.212 10.574 1 42.86 ? C22 IP7 390 A 1 HETATM 23 N N23 IP7 . . . F 4 68.268 53.247 11.142 1 48.1 ? N23 IP7 390 A 1 HETATM 24 C C24 IP7 . . . F 4 71.947 48.746 8.074 1 44.5 ? C24 IP7 390 A 1 HETATM 25 C C25 IP7 . . . F 4 73.339 48.844 8.279 1 45 ? C25 IP7 390 A 1 HETATM 26 C C26 IP7 . . . F 4 74.201 48.447 7.289 1 42.84 ? C26 IP7 390 A 1 HETATM 27 C C27 IP7 . . . F 4 73.69 47.94 6.073 1 42.92 ? C27 IP7 390 A 1 HETATM 28 C C28 IP7 . . . F 4 74.293 47.445 4.841 1 36.64 ? C28 IP7 390 A 1 HETATM 29 C C29 IP7 . . . F 4 73.302 47.069 4.012 1 40.17 ? C29 IP7 390 A 1 HETATM 30 N N30 IP7 . . . F 4 72.092 47.282 4.589 1 39.44 ? N30 IP7 390 A 1 HETATM 31 C C31 IP7 . . . F 4 72.285 47.809 5.87 1 45.94 ? C31 IP7 390 A 1 HETATM 32 C C32 IP7 . . . F 4 71.423 48.212 6.9 1 37.92 ? C32 IP7 390 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #