data_2OHV # _model_server_result.job_id MGHniOiS0tS29QZMmWQ1fg _model_server_result.datetime_utc '2024-11-12 21:18:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ohv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 2OHV # _exptl.entry_id 2OHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.31 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-4-(2-NAPHTHYLMETHYL)-D-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OHV _cell.length_a 79.745 _cell.length_b 79.745 _cell.length_c 95.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 95.7 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H17 N O4' _chem_comp.formula_weight 287.31 _chem_comp.id NHL _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-4-(2-NAPHTHYLMETHYL)-D-GLUTAMIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms 'GAMMA-2-NAPHTHYLMETHYL-D-GLUTAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 NHL doub 237 n y C8 C9 NHL sing 238 n y C8 H8 NHL sing 239 n n C7 C3 NHL sing 240 n y C7 H7 NHL sing 241 n n C3 C2 NHL doub 242 n y C3 C4 NHL sing 243 n y C2 C1 NHL sing 244 n y C2 HC2 NHL sing 245 n n C1 C6 NHL doub 246 n y C1 H1 NHL sing 247 n n C6 C5 NHL sing 248 n y C6 H6 NHL sing 249 n n C5 C4 NHL doub 250 n y C5 H5 NHL sing 251 n n C4 C10 NHL sing 252 n y C10 C9 NHL doub 253 n y C10 H10 NHL sing 254 n n C9 C11 NHL sing 255 n n C11 CG NHL sing 256 n n C11 H111 NHL sing 257 n n C11 H112 NHL sing 258 n n CG CD NHL sing 259 n n CG CB NHL sing 260 n n CG HG NHL sing 261 n n CD OE1 NHL doub 262 n n CD OE2 NHL sing 263 n n OE2 HE2 NHL sing 264 n n CB CA NHL sing 265 n n CB HB3 NHL sing 266 n n CB HB2 NHL sing 267 n n CA N NHL sing 268 n n CA C NHL sing 269 n n CA H15 NHL sing 270 n n N H NHL sing 271 n n N H2 NHL sing 272 n n C O NHL doub 273 n n C OXT NHL sing 274 n n OXT HXT NHL sing 275 n n # _atom_sites.entry_id 2OHV _atom_sites.fract_transf_matrix[1][1] 0.01254 _atom_sites.fract_transf_matrix[1][2] 0.00724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHL A 1 400 400 NHL NHL . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 42 HOH HOH . C 3 HOH A 43 443 43 HOH HOH . C 3 HOH A 44 444 44 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 56 HOH HOH . C 3 HOH A 57 457 57 HOH HOH . C 3 HOH A 58 458 58 HOH HOH . C 3 HOH A 59 459 59 HOH HOH . C 3 HOH A 60 460 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 NHL . . . B 2 36.247 32.894 68.47 1 69.16 ? C8 NHL 400 A 1 HETATM 2 C C7 NHL . . . B 2 34.978 32.374 68.082 1 69.3 ? C7 NHL 400 A 1 HETATM 3 C C3 NHL . . . B 2 33.961 32.166 69.054 1 63.49 ? C3 NHL 400 A 1 HETATM 4 C C2 NHL . . . B 2 32.694 31.649 68.663 1 62.56 ? C2 NHL 400 A 1 HETATM 5 C C1 NHL . . . B 2 31.682 31.444 69.636 1 64.03 ? C1 NHL 400 A 1 HETATM 6 C C6 NHL . . . B 2 31.931 31.755 71.01 1 66.41 ? C6 NHL 400 A 1 HETATM 7 C C5 NHL . . . B 2 33.2 32.275 71.419 1 59.67 ? C5 NHL 400 A 1 HETATM 8 C C4 NHL . . . B 2 34.226 32.486 70.454 1 57.55 ? C4 NHL 400 A 1 HETATM 9 C C10 NHL . . . B 2 35.5 33.008 70.841 1 57.37 ? C10 NHL 400 A 1 HETATM 10 C C9 NHL . . . B 2 36.517 33.22 69.852 1 63.29 ? C9 NHL 400 A 1 HETATM 11 C C11 NHL . . . B 2 37.887 33.785 70.244 1 57.14 ? C11 NHL 400 A 1 HETATM 12 C CG NHL . . . B 2 38.084 35.225 69.656 1 54.17 ? CG NHL 400 A 1 HETATM 13 C CD NHL . . . B 2 39.453 35.325 68.952 1 58.86 ? CD NHL 400 A 1 HETATM 14 O OE2 NHL . . . B 2 39.511 35.299 67.619 1 55.95 ? OE2 NHL 400 A 1 HETATM 15 O OE1 NHL . . . B 2 40.51 35.434 69.583 1 50.63 ? OE1 NHL 400 A 1 HETATM 16 C CB NHL . . . B 2 37.971 36.302 70.797 1 37.33 ? CB NHL 400 A 1 HETATM 17 C CA NHL . . . B 2 38.147 37.796 70.417 1 37 ? CA NHL 400 A 1 HETATM 18 N N NHL . . . B 2 37.292 38.122 69.229 1 33.22 ? N NHL 400 A 1 HETATM 19 C C NHL . . . B 2 37.782 38.64 71.625 1 34.32 ? C NHL 400 A 1 HETATM 20 O OXT NHL . . . B 2 38.512 38.726 72.589 1 33.43 ? OXT NHL 400 A 1 HETATM 21 O O NHL . . . B 2 36.611 39.278 71.589 1 54.64 ? O NHL 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #