data_2OI4 # _model_server_result.job_id -tqgUASHA27ifKkYcDwSUg _model_server_result.datetime_utc '2025-02-05 16:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 2OI4 # _exptl.entry_id 2OI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.428 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLUORINATED PYRIDOCARBAZOLE CYCLOPENTADIENYL RU(CO) COMPLEX' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OI4 _cell.length_a 98.104 _cell.length_b 98.104 _cell.length_c 80.672 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H12 F N3 O3 Ru 1' _chem_comp.formula_weight 498.428 _chem_comp.id JM1 _chem_comp.mon_nstd_flag . _chem_comp.name 'FLUORINATED PYRIDOCARBAZOLE CYCLOPENTADIENYL RU(CO) COMPLEX' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F29 C20 JM1 sing 215 n n C20 C19 JM1 doub 216 n y C20 C21 JM1 sing 217 n y C21 C29 JM1 doub 218 n y C21 H21 JM1 sing 219 n n C29 C12 JM1 sing 220 n y C29 C4 JM1 sing 221 n y C4 C3 JM1 doub 222 n y C4 C8 JM1 sing 223 n n C8 O9 JM1 doub 224 n n C8 N7 JM1 sing 225 n n N7 C5 JM1 sing 226 n n N7 HN7 JM1 sing 227 n n C5 C3 JM1 sing 228 n n C5 O6 JM1 doub 229 n n C19 N18 JM1 sing 230 n y C19 H19 JM1 sing 231 n n N18 RU12 JM1 sing 232 n n N18 C12 JM1 doub 233 n y RU12 C15 JM1 sing 234 n n RU12 C14 JM1 sing 235 n n RU12 C16 JM1 sing 236 n n RU12 C13 JM1 sing 237 n n RU12 C17 JM1 sing 238 n n RU12 C11 JM1 sing 239 n n RU12 N22 JM1 sing 240 n n C11 O10 JM1 trip 241 n n C17 C16 JM1 sing 242 n n C17 C13 JM1 sing 243 n n C17 H17 JM1 sing 244 n n C16 C15 JM1 sing 245 n n C16 H16 JM1 sing 246 n n C15 C14 JM1 sing 247 n n C15 H15 JM1 sing 248 n n C14 C13 JM1 sing 249 n n C14 H14 JM1 sing 250 n n C13 H13 JM1 sing 251 n n N22 C31 JM1 sing 252 n y N22 C23 JM1 sing 253 n y C31 C12 JM1 sing 254 n y C31 C30 JM1 doub 255 n y C30 C24 JM1 sing 256 n y C30 C3 JM1 sing 257 n y C24 C23 JM1 sing 258 n y C24 C25 JM1 doub 259 n y C23 C28 JM1 doub 260 n y C28 C27 JM1 sing 261 n y C28 H28 JM1 sing 262 n n C27 C26 JM1 doub 263 n y C27 H27 JM1 sing 264 n n C26 C25 JM1 sing 265 n y C26 H26 JM1 sing 266 n n C25 H25 JM1 sing 267 n n # _atom_sites.entry_id 2OI4 _atom_sites.fract_transf_matrix[1][1] 0.010193 _atom_sites.fract_transf_matrix[1][2] 0.005885 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL X 1 1001 1 CL CL . C 3 JM1 X 1 1000 0 JM1 JM1 . D 4 EDO X 1 1002 1 EDO EDO . E 4 EDO X 1 1003 2 EDO EDO . F 4 EDO X 1 1004 3 EDO EDO . G 5 EPE X 1 2691 2691 EPE EPE . H 6 HOH X 1 2692 1 HOH HOH . H 6 HOH X 2 2693 2 HOH HOH . H 6 HOH X 3 2694 3 HOH HOH . H 6 HOH X 4 2695 4 HOH HOH . H 6 HOH X 5 2696 5 HOH HOH . H 6 HOH X 6 2697 6 HOH HOH . H 6 HOH X 7 2698 7 HOH HOH . H 6 HOH X 8 2699 8 HOH HOH . H 6 HOH X 9 2700 9 HOH HOH . H 6 HOH X 10 2701 10 HOH HOH . H 6 HOH X 11 2702 11 HOH HOH . H 6 HOH X 12 2703 12 HOH HOH . H 6 HOH X 13 2704 13 HOH HOH . H 6 HOH X 14 2705 14 HOH HOH . H 6 HOH X 15 2706 15 HOH HOH . H 6 HOH X 16 2707 16 HOH HOH . H 6 HOH X 17 2708 17 HOH HOH . H 6 HOH X 18 2709 18 HOH HOH . H 6 HOH X 19 2710 19 HOH HOH . H 6 HOH X 20 2711 20 HOH HOH . H 6 HOH X 21 2712 21 HOH HOH . H 6 HOH X 22 2713 22 HOH HOH . H 6 HOH X 23 2714 23 HOH HOH . H 6 HOH X 24 2715 24 HOH HOH . H 6 HOH X 25 2716 25 HOH HOH . H 6 HOH X 26 2717 26 HOH HOH . H 6 HOH X 27 2718 27 HOH HOH . H 6 HOH X 28 2719 28 HOH HOH . H 6 HOH X 29 2720 29 HOH HOH . H 6 HOH X 30 2721 30 HOH HOH . H 6 HOH X 31 2722 31 HOH HOH . H 6 HOH X 32 2723 32 HOH HOH . H 6 HOH X 33 2724 33 HOH HOH . H 6 HOH X 34 2725 34 HOH HOH . H 6 HOH X 35 2726 35 HOH HOH . H 6 HOH X 36 2727 36 HOH HOH . H 6 HOH X 37 2728 37 HOH HOH . H 6 HOH X 38 2729 38 HOH HOH . H 6 HOH X 39 2730 39 HOH HOH . H 6 HOH X 40 2731 40 HOH HOH . H 6 HOH X 41 2732 41 HOH HOH . H 6 HOH X 42 2733 42 HOH HOH . H 6 HOH X 43 2734 43 HOH HOH . H 6 HOH X 44 2735 44 HOH HOH . H 6 HOH X 45 2736 45 HOH HOH . H 6 HOH X 46 2737 46 HOH HOH . H 6 HOH X 47 2738 47 HOH HOH . H 6 HOH X 48 2739 48 HOH HOH . H 6 HOH X 49 2740 49 HOH HOH . H 6 HOH X 50 2741 50 HOH HOH . H 6 HOH X 51 2742 51 HOH HOH . H 6 HOH X 52 2743 52 HOH HOH . H 6 HOH X 53 2744 53 HOH HOH . H 6 HOH X 54 2745 54 HOH HOH . H 6 HOH X 55 2746 55 HOH HOH . H 6 HOH X 56 2747 56 HOH HOH . H 6 HOH X 57 2748 57 HOH HOH . H 6 HOH X 58 2749 58 HOH HOH . H 6 HOH X 59 2750 59 HOH HOH . H 6 HOH X 60 2751 60 HOH HOH . H 6 HOH X 61 2752 61 HOH HOH . H 6 HOH X 62 2753 62 HOH HOH . H 6 HOH X 63 2754 63 HOH HOH . H 6 HOH X 64 2755 64 HOH HOH . H 6 HOH X 65 2756 65 HOH HOH . H 6 HOH X 66 2757 66 HOH HOH . H 6 HOH X 67 2758 67 HOH HOH . H 6 HOH X 68 2759 68 HOH HOH . H 6 HOH X 69 2760 69 HOH HOH . H 6 HOH X 70 2761 70 HOH HOH . H 6 HOH X 71 2762 71 HOH HOH . H 6 HOH X 72 2763 72 HOH HOH . H 6 HOH X 73 2764 73 HOH HOH . H 6 HOH X 74 2765 74 HOH HOH . H 6 HOH X 75 2766 75 HOH HOH . H 6 HOH X 76 2767 76 HOH HOH . H 6 HOH X 77 2768 77 HOH HOH . H 6 HOH X 78 2769 78 HOH HOH . H 6 HOH X 79 2770 79 HOH HOH . H 6 HOH X 80 2771 80 HOH HOH . H 6 HOH X 81 2772 81 HOH HOH . H 6 HOH X 82 2773 82 HOH HOH . H 6 HOH X 83 2774 83 HOH HOH . H 6 HOH X 84 2775 84 HOH HOH . H 6 HOH X 85 2776 85 HOH HOH . H 6 HOH X 86 2777 86 HOH HOH . H 6 HOH X 87 2778 87 HOH HOH . H 6 HOH X 88 2779 88 HOH HOH . H 6 HOH X 89 2780 89 HOH HOH . H 6 HOH X 90 2781 90 HOH HOH . H 6 HOH X 91 2782 91 HOH HOH . H 6 HOH X 92 2783 92 HOH HOH . H 6 HOH X 93 2784 93 HOH HOH . H 6 HOH X 94 2785 94 HOH HOH . H 6 HOH X 95 2786 95 HOH HOH . H 6 HOH X 96 2787 96 HOH HOH . H 6 HOH X 97 2788 97 HOH HOH . H 6 HOH X 98 2789 98 HOH HOH . H 6 HOH X 99 2790 99 HOH HOH . H 6 HOH X 100 2791 100 HOH HOH . H 6 HOH X 101 2792 101 HOH HOH . H 6 HOH X 102 2793 102 HOH HOH . H 6 HOH X 103 2794 103 HOH HOH . H 6 HOH X 104 2795 104 HOH HOH . H 6 HOH X 105 2796 105 HOH HOH . H 6 HOH X 106 2797 106 HOH HOH . H 6 HOH X 107 2798 107 HOH HOH . H 6 HOH X 108 2799 108 HOH HOH . H 6 HOH X 109 2800 109 HOH HOH . H 6 HOH X 110 2801 110 HOH HOH . H 6 HOH X 111 2802 111 HOH HOH . H 6 HOH X 112 2803 112 HOH HOH . H 6 HOH X 113 2804 113 HOH HOH . H 6 HOH X 114 2805 114 HOH HOH . H 6 HOH X 115 2806 115 HOH HOH . H 6 HOH X 116 2807 116 HOH HOH . H 6 HOH X 117 2808 117 HOH HOH . H 6 HOH X 118 2809 118 HOH HOH . H 6 HOH X 119 2810 119 HOH HOH . H 6 HOH X 120 2811 120 HOH HOH . H 6 HOH X 121 2812 121 HOH HOH . H 6 HOH X 122 2813 122 HOH HOH . H 6 HOH X 123 2814 123 HOH HOH . H 6 HOH X 124 2815 124 HOH HOH . H 6 HOH X 125 2816 125 HOH HOH . H 6 HOH X 126 2817 126 HOH HOH . H 6 HOH X 127 2818 127 HOH HOH . H 6 HOH X 128 2819 128 HOH HOH . H 6 HOH X 129 2820 129 HOH HOH . H 6 HOH X 130 2821 130 HOH HOH . H 6 HOH X 131 2822 131 HOH HOH . H 6 HOH X 132 2823 132 HOH HOH . H 6 HOH X 133 2824 133 HOH HOH . H 6 HOH X 134 2825 134 HOH HOH . H 6 HOH X 135 2826 135 HOH HOH . H 6 HOH X 136 2827 136 HOH HOH . H 6 HOH X 137 2828 137 HOH HOH . H 6 HOH X 138 2829 138 HOH HOH . H 6 HOH X 139 2830 139 HOH HOH . H 6 HOH X 140 2831 140 HOH HOH . H 6 HOH X 141 2832 141 HOH HOH . H 6 HOH X 142 2833 142 HOH HOH . H 6 HOH X 143 2834 143 HOH HOH . H 6 HOH X 144 2835 144 HOH HOH . H 6 HOH X 145 2836 145 HOH HOH . H 6 HOH X 146 2837 146 HOH HOH . H 6 HOH X 147 2838 147 HOH HOH . H 6 HOH X 148 2839 148 HOH HOH . H 6 HOH X 149 2840 149 HOH HOH . H 6 HOH X 150 2841 150 HOH HOH . H 6 HOH X 151 2842 151 HOH HOH . H 6 HOH X 152 2843 152 HOH HOH . H 6 HOH X 153 2844 153 HOH HOH . H 6 HOH X 154 2845 154 HOH HOH . H 6 HOH X 155 2846 155 HOH HOH . H 6 HOH X 156 2847 156 HOH HOH . H 6 HOH X 157 2848 157 HOH HOH . H 6 HOH X 158 2849 158 HOH HOH . H 6 HOH X 159 2850 159 HOH HOH . H 6 HOH X 160 2851 160 HOH HOH . H 6 HOH X 161 2852 161 HOH HOH . H 6 HOH X 162 2853 162 HOH HOH . H 6 HOH X 163 2854 163 HOH HOH . H 6 HOH X 164 2855 164 HOH HOH . H 6 HOH X 165 2856 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F29 JM1 . . . C 3 -23.885 -38.54 -4.637 1 25.61 ? F29 JM1 1000 X 1 HETATM 2 C C20 JM1 . . . C 3 -23.5 -37.419 -3.808 1 23.4 ? C20 JM1 1000 X 1 HETATM 3 C C21 JM1 . . . C 3 -23.573 -37.581 -2.418 1 22.45 ? C21 JM1 1000 X 1 HETATM 4 C C29 JM1 . . . C 3 -23.219 -36.478 -1.658 1 21.18 ? C29 JM1 1000 X 1 HETATM 5 C C4 JM1 . . . C 3 -23.224 -36.419 -0.247 1 23.03 ? C4 JM1 1000 X 1 HETATM 6 C C8 JM1 . . . C 3 -23.567 -37.404 0.702 1 22.91 ? C8 JM1 1000 X 1 HETATM 7 O O9 JM1 . . . C 3 -24.016 -38.526 0.454 1 24.44 ? O9 JM1 1000 X 1 HETATM 8 N N7 JM1 . . . C 3 -23.493 -36.891 1.978 1 22.81 ? N7 JM1 1000 X 1 HETATM 9 C C5 JM1 . . . C 3 -23.101 -35.583 1.796 1 22.26 ? C5 JM1 1000 X 1 HETATM 10 O O6 JM1 . . . C 3 -22.952 -34.842 2.706 1 22.75 ? O6 JM1 1000 X 1 HETATM 11 C C19 JM1 . . . C 3 -23.12 -36.27 -4.47 1 22.72 ? C19 JM1 1000 X 1 HETATM 12 N N18 JM1 . . . C 3 -22.794 -35.193 -3.729 1 22.91 ? N18 JM1 1000 X 1 HETATM 13 RU RU12 JM1 . . . C 3 -22.271 -33.329 -4.391 1 25.81 ? RU12 JM1 1000 X 1 HETATM 14 C C11 JM1 . . . C 3 -20.331 -33.659 -4.659 1 25.62 ? C11 JM1 1000 X 1 HETATM 15 O O10 JM1 . . . C 3 -19.298 -33.949 -4.778 1 30.97 ? O10 JM1 1000 X 1 HETATM 16 C C17 JM1 . . . C 3 -23.816 -31.855 -4.68 1 25.97 ? C17 JM1 1000 X 1 HETATM 17 C C16 JM1 . . . C 3 -24.097 -32.968 -5.472 1 26.84 ? C16 JM1 1000 X 1 HETATM 18 C C15 JM1 . . . C 3 -23.054 -33.159 -6.387 1 25.53 ? C15 JM1 1000 X 1 HETATM 19 C C14 JM1 . . . C 3 -22.131 -32.158 -6.162 1 27.97 ? C14 JM1 1000 X 1 HETATM 20 C C13 JM1 . . . C 3 -22.576 -31.361 -5.106 1 28.07 ? C13 JM1 1000 X 1 HETATM 21 N N22 JM1 . . . C 3 -22.141 -33.096 -2.338 1 22.01 ? N22 JM1 1000 X 1 HETATM 22 C C31 JM1 . . . C 3 -22.534 -34.203 -1.635 1 22.96 ? C31 JM1 1000 X 1 HETATM 23 C C12 JM1 . . . C 3 -22.86 -35.332 -2.347 1 24.82 ? C12 JM1 1000 X 1 HETATM 24 C C30 JM1 . . . C 3 -22.484 -34.078 -0.251 1 21.86 ? C30 JM1 1000 X 1 HETATM 25 C C3 JM1 . . . C 3 -22.876 -35.253 0.449 1 23.36 ? C3 JM1 1000 X 1 HETATM 26 C C24 JM1 . . . C 3 -22.081 -32.748 -0.018 1 21.81 ? C24 JM1 1000 X 1 HETATM 27 C C23 JM1 . . . C 3 -21.895 -32.153 -1.294 1 22.53 ? C23 JM1 1000 X 1 HETATM 28 C C28 JM1 . . . C 3 -21.468 -30.838 -1.419 1 22.23 ? C28 JM1 1000 X 1 HETATM 29 C C27 JM1 . . . C 3 -21.265 -30.137 -0.246 1 22.31 ? C27 JM1 1000 X 1 HETATM 30 C C26 JM1 . . . C 3 -21.394 -30.682 1.031 1 21.85 ? C26 JM1 1000 X 1 HETATM 31 C C25 JM1 . . . C 3 -21.835 -32.005 1.16 1 23.64 ? C25 JM1 1000 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #