data_2OI7 # _model_server_result.job_id pYqwapuKaVfMmnRGY-9eHw _model_server_result.datetime_utc '2024-11-13 20:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":6002}' # _entry.id 2OI7 # _exptl.entry_id 2OI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OI7 _cell.length_a 102.969 _cell.length_b 102.969 _cell.length_c 644.076 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PISA,PQS trimeric 3 author_and_software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,N 1 1,2,3 B,G,H,I,J,K,L,M,O 2 1,2,3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 51.4845 89.17377 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -51.4845 89.17377 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 406 A ASP 406 1_555 D CO CO . A CO 6003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A OD2 ASP 406 A ASP 406 2_665 D CO CO . A CO 6003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 A OD2 ASP 406 A ASP 406 3_565 D CO CO . A CO 6003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 B OD2 ASP 105 B ASP 105 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 B OD1 ASN 227 B ASN 227 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 B OD1 ASP 406 B ASP 406 1_555 I CO CO . B CO 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 B OD1 ASP 406 B ASP 406 2_665 I CO CO . B CO 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 B OD1 ASP 406 B ASP 406 3_565 I CO CO . B CO 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc9 B OD2 ASP 406 B ASP 406 1_555 J CO CO . B CO 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc10 B OD1 ASP 406 B ASP 406 1_555 J CO CO . B CO 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc11 B OD1 ASP 406 B ASP 406 2_665 J CO CO . B CO 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc12 B OD1 ASP 406 B ASP 406 3_565 J CO CO . B CO 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc13 B OD2 ASP 406 B ASP 406 2_665 J CO CO . B CO 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc14 B OD2 ASP 406 B ASP 406 3_565 J CO CO . B CO 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 M O2B UD1 . B UD1 4001 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc16 M O2A UD1 . B UD1 4001 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc17 H MG MG . B MG 6000 1_555 O O HOH . B HOH 8008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc18 H MG MG . B MG 6000 1_555 O O HOH . B HOH 8064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2OI7 _atom_sites.fract_transf_matrix[1][1] 0.009712 _atom_sites.fract_transf_matrix[1][2] 0.005607 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GN1 A 1 5000 5000 GN1 GN1 . D 3 CO A 1 6003 6003 CO CO . E 4 DCA A 1 2000 2000 DCA DCA . F 5 UD1 A 1 4000 4000 UD1 UD1 . G 2 GN1 B 1 5001 5001 GN1 GN1 . H 6 MG B 1 6000 6000 MG MG . I 3 CO B 1 6001 6001 CO CO . J 3 CO B 1 6002 6002 CO CO . K 7 SO4 B 1 7000 7000 SO4 SO4 . L 4 DCA B 1 2001 2001 DCA DCA . M 5 UD1 B 1 4001 4001 UD1 UD1 . N 8 HOH A 1 8000 8000 HOH HOH . N 8 HOH A 2 8001 8001 HOH HOH . N 8 HOH A 3 8003 8003 HOH HOH . N 8 HOH A 4 8007 8007 HOH HOH . N 8 HOH A 5 8009 8009 HOH HOH . N 8 HOH A 6 8012 8012 HOH HOH . N 8 HOH A 7 8013 8013 HOH HOH . N 8 HOH A 8 8015 8015 HOH HOH . N 8 HOH A 9 8016 8016 HOH HOH . N 8 HOH A 10 8017 8017 HOH HOH . N 8 HOH A 11 8019 8019 HOH HOH . N 8 HOH A 12 8021 8021 HOH HOH . N 8 HOH A 13 8022 8022 HOH HOH . N 8 HOH A 14 8025 8025 HOH HOH . N 8 HOH A 15 8028 8028 HOH HOH . N 8 HOH A 16 8029 8029 HOH HOH . N 8 HOH A 17 8032 8032 HOH HOH . N 8 HOH A 18 8033 8033 HOH HOH . N 8 HOH A 19 8037 8037 HOH HOH . N 8 HOH A 20 8039 8039 HOH HOH . N 8 HOH A 21 8043 8043 HOH HOH . N 8 HOH A 22 8047 8047 HOH HOH . N 8 HOH A 23 8049 8049 HOH HOH . N 8 HOH A 24 8050 8050 HOH HOH . N 8 HOH A 25 8056 8056 HOH HOH . N 8 HOH A 26 8058 8058 HOH HOH . N 8 HOH A 27 8060 8060 HOH HOH . N 8 HOH A 28 8062 8062 HOH HOH . N 8 HOH A 29 8063 8063 HOH HOH . N 8 HOH A 30 8067 8067 HOH HOH . N 8 HOH A 31 8070 8070 HOH HOH . N 8 HOH A 32 8072 8072 HOH HOH . N 8 HOH A 33 8073 8073 HOH HOH . N 8 HOH A 34 8074 8074 HOH HOH . N 8 HOH A 35 8079 8079 HOH HOH . N 8 HOH A 36 8080 8080 HOH HOH . N 8 HOH A 37 8082 8082 HOH HOH . N 8 HOH A 38 8084 8084 HOH HOH . N 8 HOH A 39 8089 8089 HOH HOH . N 8 HOH A 40 8090 8090 HOH HOH . N 8 HOH A 41 8091 8091 HOH HOH . N 8 HOH A 42 8092 8092 HOH HOH . N 8 HOH A 43 8095 8095 HOH HOH . N 8 HOH A 44 8097 8097 HOH HOH . N 8 HOH A 45 8099 8099 HOH HOH . N 8 HOH A 46 8100 8100 HOH HOH . N 8 HOH A 47 8101 8101 HOH HOH . N 8 HOH A 48 8103 8103 HOH HOH . N 8 HOH A 49 8105 8105 HOH HOH . N 8 HOH A 50 8108 8108 HOH HOH . N 8 HOH A 51 8110 8110 HOH HOH . N 8 HOH A 52 8111 8111 HOH HOH . N 8 HOH A 53 8113 8113 HOH HOH . N 8 HOH A 54 8114 8114 HOH HOH . N 8 HOH A 55 8115 8115 HOH HOH . N 8 HOH A 56 8119 8119 HOH HOH . N 8 HOH A 57 8120 8120 HOH HOH . N 8 HOH A 58 8123 8123 HOH HOH . N 8 HOH A 59 8126 8126 HOH HOH . N 8 HOH A 60 8128 8128 HOH HOH . N 8 HOH A 61 8130 8130 HOH HOH . N 8 HOH A 62 8131 8131 HOH HOH . N 8 HOH A 63 8133 8133 HOH HOH . N 8 HOH A 64 8136 8136 HOH HOH . N 8 HOH A 65 8143 8143 HOH HOH . N 8 HOH A 66 8144 8144 HOH HOH . N 8 HOH A 67 8146 8146 HOH HOH . N 8 HOH A 68 8147 8147 HOH HOH . N 8 HOH A 69 8149 8149 HOH HOH . N 8 HOH A 70 8150 8150 HOH HOH . N 8 HOH A 71 8154 8154 HOH HOH . N 8 HOH A 72 8155 8155 HOH HOH . N 8 HOH A 73 8156 8156 HOH HOH . N 8 HOH A 74 8157 8157 HOH HOH . N 8 HOH A 75 8159 8159 HOH HOH . N 8 HOH A 76 8162 8162 HOH HOH . N 8 HOH A 77 8165 8165 HOH HOH . N 8 HOH A 78 8167 8167 HOH HOH . N 8 HOH A 79 8168 8168 HOH HOH . N 8 HOH A 80 8169 8169 HOH HOH . N 8 HOH A 81 8170 8170 HOH HOH . N 8 HOH A 82 8171 8171 HOH HOH . N 8 HOH A 83 8174 8174 HOH HOH . N 8 HOH A 84 8175 8175 HOH HOH . N 8 HOH A 85 8176 8176 HOH HOH . N 8 HOH A 86 8178 8178 HOH HOH . N 8 HOH A 87 8179 8179 HOH HOH . N 8 HOH A 88 8180 8180 HOH HOH . N 8 HOH A 89 8183 8183 HOH HOH . O 8 HOH B 1 8002 8002 HOH HOH . O 8 HOH B 2 8004 8004 HOH HOH . O 8 HOH B 3 8005 8005 HOH HOH . O 8 HOH B 4 8006 8006 HOH HOH . O 8 HOH B 5 8008 8008 HOH HOH . O 8 HOH B 6 8010 8010 HOH HOH . O 8 HOH B 7 8011 8011 HOH HOH . O 8 HOH B 8 8014 8014 HOH HOH . O 8 HOH B 9 8018 8018 HOH HOH . O 8 HOH B 10 8020 8020 HOH HOH . O 8 HOH B 11 8023 8023 HOH HOH . O 8 HOH B 12 8024 8024 HOH HOH . O 8 HOH B 13 8026 8026 HOH HOH . O 8 HOH B 14 8027 8027 HOH HOH . O 8 HOH B 15 8030 8030 HOH HOH . O 8 HOH B 16 8031 8031 HOH HOH . O 8 HOH B 17 8034 8034 HOH HOH . O 8 HOH B 18 8035 8035 HOH HOH . O 8 HOH B 19 8040 8040 HOH HOH . O 8 HOH B 20 8041 8041 HOH HOH . O 8 HOH B 21 8042 8042 HOH HOH . O 8 HOH B 22 8044 8044 HOH HOH . O 8 HOH B 23 8045 8045 HOH HOH . O 8 HOH B 24 8046 8046 HOH HOH . O 8 HOH B 25 8048 8048 HOH HOH . O 8 HOH B 26 8051 8051 HOH HOH . O 8 HOH B 27 8052 8052 HOH HOH . O 8 HOH B 28 8053 8053 HOH HOH . O 8 HOH B 29 8054 8054 HOH HOH . O 8 HOH B 30 8055 8055 HOH HOH . O 8 HOH B 31 8057 8057 HOH HOH . O 8 HOH B 32 8061 8061 HOH HOH . O 8 HOH B 33 8064 8064 HOH HOH . O 8 HOH B 34 8065 8065 HOH HOH . O 8 HOH B 35 8066 8066 HOH HOH . O 8 HOH B 36 8068 8068 HOH HOH . O 8 HOH B 37 8069 8069 HOH HOH . O 8 HOH B 38 8071 8071 HOH HOH . O 8 HOH B 39 8075 8075 HOH HOH . O 8 HOH B 40 8076 8076 HOH HOH . O 8 HOH B 41 8077 8077 HOH HOH . O 8 HOH B 42 8078 8078 HOH HOH . O 8 HOH B 43 8081 8081 HOH HOH . O 8 HOH B 44 8083 8083 HOH HOH . O 8 HOH B 45 8085 8085 HOH HOH . O 8 HOH B 46 8086 8086 HOH HOH . O 8 HOH B 47 8087 8087 HOH HOH . O 8 HOH B 48 8088 8088 HOH HOH . O 8 HOH B 49 8093 8093 HOH HOH . O 8 HOH B 50 8094 8094 HOH HOH . O 8 HOH B 51 8096 8096 HOH HOH . O 8 HOH B 52 8098 8098 HOH HOH . O 8 HOH B 53 8102 8102 HOH HOH . O 8 HOH B 54 8104 8104 HOH HOH . O 8 HOH B 55 8106 8106 HOH HOH . O 8 HOH B 56 8107 8107 HOH HOH . O 8 HOH B 57 8109 8109 HOH HOH . O 8 HOH B 58 8112 8112 HOH HOH . O 8 HOH B 59 8116 8116 HOH HOH . O 8 HOH B 60 8117 8117 HOH HOH . O 8 HOH B 61 8118 8118 HOH HOH . O 8 HOH B 62 8121 8121 HOH HOH . O 8 HOH B 63 8122 8122 HOH HOH . O 8 HOH B 64 8124 8124 HOH HOH . O 8 HOH B 65 8125 8125 HOH HOH . O 8 HOH B 66 8127 8127 HOH HOH . O 8 HOH B 67 8129 8129 HOH HOH . O 8 HOH B 68 8134 8134 HOH HOH . O 8 HOH B 69 8135 8135 HOH HOH . O 8 HOH B 70 8137 8137 HOH HOH . O 8 HOH B 71 8138 8138 HOH HOH . O 8 HOH B 72 8139 8139 HOH HOH . O 8 HOH B 73 8140 8140 HOH HOH . O 8 HOH B 74 8141 8141 HOH HOH . O 8 HOH B 75 8142 8142 HOH HOH . O 8 HOH B 76 8145 8145 HOH HOH . O 8 HOH B 77 8148 8148 HOH HOH . O 8 HOH B 78 8151 8151 HOH HOH . O 8 HOH B 79 8153 8153 HOH HOH . O 8 HOH B 80 8158 8158 HOH HOH . O 8 HOH B 81 8160 8160 HOH HOH . O 8 HOH B 82 8161 8161 HOH HOH . O 8 HOH B 83 8163 8163 HOH HOH . O 8 HOH B 84 8164 8164 HOH HOH . O 8 HOH B 85 8166 8166 HOH HOH . O 8 HOH B 86 8177 8177 HOH HOH . O 8 HOH B 87 8181 8181 HOH HOH . O 8 HOH B 88 8182 8182 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 59.45 _atom_site.Cartn_z 220.438 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 23.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 6002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 240 _model_server_stats.query_time_ms 448 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #