data_2OJ9 # _model_server_result.job_id Gl9sJiwGxYygYIpPr9_eOg _model_server_result.datetime_utc '2024-11-04 22:57:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 2OJ9 # _exptl.entry_id 2OJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[5-(1H-IMIDAZOL-1-YL)-7-METHYL-1H-BENZIMIDAZOL-2-YL]-4-[(PYRIDIN-2-YLMETHYL)AMINO]PYRIDIN-2(1H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.05 _cell.angle_gamma 90 _cell.entry_id 2OJ9 _cell.length_a 57.271 _cell.length_b 44.289 _cell.length_c 65.744 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H19 N7 O' _chem_comp.formula_weight 397.433 _chem_comp.id BMI _chem_comp.mon_nstd_flag . _chem_comp.name 3-[5-(1H-IMIDAZOL-1-YL)-7-METHYL-1H-BENZIMIDAZOL-2-YL]-4-[(PYRIDIN-2-YLMETHYL)AMINO]PYRIDIN-2(1H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O BMI doub 70 n n C N1 BMI sing 71 n y C C10 BMI sing 72 n y N C1 BMI sing 73 n n N C4 BMI sing 74 n n N HN BMI sing 75 n n N1 C3 BMI sing 76 n y N1 HN1 BMI sing 77 n n C1 C2 BMI sing 78 n y C1 C10 BMI doub 79 n y C2 C3 BMI doub 80 n y C2 H2 BMI sing 81 n n C3 H3 BMI sing 82 n n C4 C8 BMI sing 83 n n C4 H41 BMI sing 84 n n C4 H42 BMI sing 85 n n C5 C7 BMI doub 86 n y C5 C6 BMI sing 87 n y C5 H5 BMI sing 88 n n C6 C8 BMI doub 89 n y C6 H6 BMI sing 90 n n C7 C9 BMI sing 91 n y C7 H7 BMI sing 92 n n C8 N2 BMI sing 93 n y N2 C9 BMI doub 94 n y C9 H9 BMI sing 95 n n C10 C17 BMI sing 96 n y C11 N3 BMI sing 97 n y C11 C15 BMI doub 98 n y C11 H11 BMI sing 99 n n C12 C13 BMI sing 100 n y C12 N3 BMI sing 101 n y C12 C20 BMI doub 102 n y C13 C16 BMI doub 103 n y C13 H13 BMI sing 104 n n N3 C14 BMI sing 105 n y C14 N4 BMI doub 106 n y C14 H14 BMI sing 107 n n N4 C15 BMI sing 108 n y C15 H15 BMI sing 109 n n C16 N6 BMI sing 110 n y C16 C18 BMI sing 111 n y N5 C17 BMI sing 112 n y N5 C18 BMI sing 113 n y N5 HN5 BMI sing 114 n n C17 N6 BMI doub 115 n y C18 C19 BMI doub 116 n y C19 C20 BMI sing 117 n y C19 C21 BMI sing 118 n n C20 H20 BMI sing 119 n n C21 H211 BMI sing 120 n n C21 H212 BMI sing 121 n n C21 H213 BMI sing 122 n n # _atom_sites.entry_id 2OJ9 _atom_sites.fract_transf_matrix[1][1] 0.017461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002781 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BMI A 1 301 301 BMI BMI . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 80 80 HOH HOH . C 3 HOH A 81 81 81 HOH HOH . C 3 HOH A 82 82 82 HOH HOH . C 3 HOH A 83 83 83 HOH HOH . C 3 HOH A 84 84 84 HOH HOH . C 3 HOH A 85 85 85 HOH HOH . C 3 HOH A 86 86 86 HOH HOH . C 3 HOH A 87 87 87 HOH HOH . C 3 HOH A 88 88 88 HOH HOH . C 3 HOH A 89 89 89 HOH HOH . C 3 HOH A 90 90 90 HOH HOH . C 3 HOH A 91 91 91 HOH HOH . C 3 HOH A 92 92 92 HOH HOH . C 3 HOH A 93 93 93 HOH HOH . C 3 HOH A 94 94 94 HOH HOH . C 3 HOH A 95 95 95 HOH HOH . C 3 HOH A 96 96 96 HOH HOH . C 3 HOH A 97 97 97 HOH HOH . C 3 HOH A 98 98 98 HOH HOH . C 3 HOH A 99 99 99 HOH HOH . C 3 HOH A 100 100 100 HOH HOH . C 3 HOH A 101 101 101 HOH HOH . C 3 HOH A 102 102 102 HOH HOH . C 3 HOH A 103 103 103 HOH HOH . C 3 HOH A 104 104 104 HOH HOH . C 3 HOH A 105 105 105 HOH HOH . C 3 HOH A 106 106 106 HOH HOH . C 3 HOH A 107 107 107 HOH HOH . C 3 HOH A 108 108 108 HOH HOH . C 3 HOH A 109 109 109 HOH HOH . C 3 HOH A 110 110 110 HOH HOH . C 3 HOH A 111 111 111 HOH HOH . C 3 HOH A 112 112 112 HOH HOH . C 3 HOH A 113 113 113 HOH HOH . C 3 HOH A 114 114 114 HOH HOH . C 3 HOH A 115 115 115 HOH HOH . C 3 HOH A 116 116 116 HOH HOH . C 3 HOH A 117 117 117 HOH HOH . C 3 HOH A 118 118 118 HOH HOH . C 3 HOH A 119 119 119 HOH HOH . C 3 HOH A 120 120 120 HOH HOH . C 3 HOH A 121 121 121 HOH HOH . C 3 HOH A 122 122 122 HOH HOH . C 3 HOH A 123 123 123 HOH HOH . C 3 HOH A 124 124 124 HOH HOH . C 3 HOH A 125 125 125 HOH HOH . C 3 HOH A 126 126 126 HOH HOH . C 3 HOH A 127 127 127 HOH HOH . C 3 HOH A 128 128 128 HOH HOH . C 3 HOH A 129 129 129 HOH HOH . C 3 HOH A 130 130 130 HOH HOH . C 3 HOH A 131 131 131 HOH HOH . C 3 HOH A 132 132 132 HOH HOH . C 3 HOH A 133 133 133 HOH HOH . C 3 HOH A 134 134 134 HOH HOH . C 3 HOH A 135 135 135 HOH HOH . C 3 HOH A 136 136 136 HOH HOH . C 3 HOH A 137 137 137 HOH HOH . C 3 HOH A 138 138 138 HOH HOH . C 3 HOH A 139 139 139 HOH HOH . C 3 HOH A 140 140 140 HOH HOH . C 3 HOH A 141 141 141 HOH HOH . C 3 HOH A 142 142 142 HOH HOH . C 3 HOH A 143 143 143 HOH HOH . C 3 HOH A 144 144 144 HOH HOH . C 3 HOH A 145 145 145 HOH HOH . C 3 HOH A 146 146 146 HOH HOH . C 3 HOH A 147 147 147 HOH HOH . C 3 HOH A 148 148 148 HOH HOH . C 3 HOH A 149 149 149 HOH HOH . C 3 HOH A 150 150 150 HOH HOH . C 3 HOH A 151 151 151 HOH HOH . C 3 HOH A 152 152 152 HOH HOH . C 3 HOH A 153 153 153 HOH HOH . C 3 HOH A 154 154 154 HOH HOH . C 3 HOH A 155 155 155 HOH HOH . C 3 HOH A 156 156 156 HOH HOH . C 3 HOH A 157 157 157 HOH HOH . C 3 HOH A 158 158 158 HOH HOH . C 3 HOH A 159 159 159 HOH HOH . C 3 HOH A 160 160 160 HOH HOH . C 3 HOH A 161 161 161 HOH HOH . C 3 HOH A 162 162 162 HOH HOH . C 3 HOH A 163 163 163 HOH HOH . C 3 HOH A 164 164 164 HOH HOH . C 3 HOH A 165 165 165 HOH HOH . C 3 HOH A 166 166 166 HOH HOH . C 3 HOH A 167 167 167 HOH HOH . C 3 HOH A 168 168 168 HOH HOH . C 3 HOH A 169 169 169 HOH HOH . C 3 HOH A 170 170 170 HOH HOH . C 3 HOH A 171 171 171 HOH HOH . C 3 HOH A 172 172 172 HOH HOH . C 3 HOH A 173 173 173 HOH HOH . C 3 HOH A 174 174 174 HOH HOH . C 3 HOH A 175 175 175 HOH HOH . C 3 HOH A 176 176 176 HOH HOH . C 3 HOH A 177 177 177 HOH HOH . C 3 HOH A 178 178 178 HOH HOH . C 3 HOH A 179 179 179 HOH HOH . C 3 HOH A 180 180 180 HOH HOH . C 3 HOH A 181 181 181 HOH HOH . C 3 HOH A 182 182 182 HOH HOH . C 3 HOH A 183 183 183 HOH HOH . C 3 HOH A 184 184 184 HOH HOH . C 3 HOH A 185 185 185 HOH HOH . C 3 HOH A 186 186 186 HOH HOH . C 3 HOH A 187 187 187 HOH HOH . C 3 HOH A 188 188 188 HOH HOH . C 3 HOH A 189 189 189 HOH HOH . C 3 HOH A 190 190 190 HOH HOH . C 3 HOH A 191 191 191 HOH HOH . C 3 HOH A 192 192 192 HOH HOH . C 3 HOH A 193 193 193 HOH HOH . C 3 HOH A 194 194 194 HOH HOH . C 3 HOH A 195 195 195 HOH HOH . C 3 HOH A 196 196 196 HOH HOH . C 3 HOH A 197 197 197 HOH HOH . C 3 HOH A 198 198 198 HOH HOH . C 3 HOH A 199 199 199 HOH HOH . C 3 HOH A 200 200 200 HOH HOH . C 3 HOH A 201 201 201 HOH HOH . C 3 HOH A 202 202 202 HOH HOH . C 3 HOH A 203 203 203 HOH HOH . C 3 HOH A 204 204 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BMI . . . B 2 3.146 -4.525 18.441 1 17.8 ? C BMI 301 A 1 HETATM 2 O O BMI . . . B 2 2.756 -5.636 17.883 1 16.49 ? O BMI 301 A 1 HETATM 3 N N BMI . . . B 2 4.931 -3.267 21.682 1 22.26 ? N BMI 301 A 1 HETATM 4 N N1 BMI . . . B 2 2.898 -3.331 17.932 1 14.68 ? N1 BMI 301 A 1 HETATM 5 C C1 BMI . . . B 2 4.224 -3.363 20.427 1 19.42 ? C1 BMI 301 A 1 HETATM 6 C C2 BMI . . . B 2 3.951 -2.166 19.742 1 17.48 ? C2 BMI 301 A 1 HETATM 7 C C3 BMI . . . B 2 3.289 -2.238 18.576 1 16.99 ? C3 BMI 301 A 1 HETATM 8 C C4 BMI . . . B 2 6.146 -2.319 21.852 1 27.71 ? C4 BMI 301 A 1 HETATM 9 C C5 BMI . . . B 2 8.458 -4.03 24.291 1 28.86 ? C5 BMI 301 A 1 HETATM 10 C C6 BMI . . . B 2 7.542 -3.167 23.748 1 29.6 ? C6 BMI 301 A 1 HETATM 11 C C7 BMI . . . B 2 9.036 -4.965 23.423 1 29.11 ? C7 BMI 301 A 1 HETATM 12 C C8 BMI . . . B 2 7.211 -3.234 22.412 1 29.98 ? C8 BMI 301 A 1 HETATM 13 N N2 BMI . . . B 2 7.762 -4.15 21.576 1 31.63 ? N2 BMI 301 A 1 HETATM 14 C C9 BMI . . . B 2 8.657 -5.006 22.063 1 30.37 ? C9 BMI 301 A 1 HETATM 15 C C10 BMI . . . B 2 3.819 -4.549 19.75 1 18.98 ? C10 BMI 301 A 1 HETATM 16 C C11 BMI . . . B 2 5.925 -12.107 22.539 1 31.41 ? C11 BMI 301 A 1 HETATM 17 C C12 BMI . . . B 2 5.565 -9.854 21.528 1 21.87 ? C12 BMI 301 A 1 HETATM 18 C C13 BMI . . . B 2 5.023 -9.259 20.449 1 18.52 ? C13 BMI 301 A 1 HETATM 19 N N3 BMI . . . B 2 5.905 -11.214 21.502 1 28.1 ? N3 BMI 301 A 1 HETATM 20 C C14 BMI . . . B 2 6.311 -11.86 20.405 1 28.43 ? C14 BMI 301 A 1 HETATM 21 N N4 BMI . . . B 2 6.6 -13.151 20.65 1 30.05 ? N4 BMI 301 A 1 HETATM 22 C C15 BMI . . . B 2 6.352 -13.341 21.989 1 32.87 ? C15 BMI 301 A 1 HETATM 23 C C16 BMI . . . B 2 4.738 -7.889 20.515 1 17.94 ? C16 BMI 301 A 1 HETATM 24 N N5 BMI . . . B 2 4.679 -5.943 21.42 1 18.43 ? N5 BMI 301 A 1 HETATM 25 C C17 BMI . . . B 2 4.162 -5.822 20.321 1 18.28 ? C17 BMI 301 A 1 HETATM 26 N N6 BMI . . . B 2 4.205 -6.953 19.674 1 18.35 ? N6 BMI 301 A 1 HETATM 27 C C18 BMI . . . B 2 5.003 -7.257 21.587 1 18.64 ? C18 BMI 301 A 1 HETATM 28 C C19 BMI . . . B 2 5.531 -7.888 22.618 1 22.07 ? C19 BMI 301 A 1 HETATM 29 C C20 BMI . . . B 2 5.799 -9.17 22.62 1 21.31 ? C20 BMI 301 A 1 HETATM 30 C C21 BMI . . . B 2 5.795 -7.059 23.834 1 24.82 ? C21 BMI 301 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #