data_2OJE # _model_server_result.job_id YKehDj6CADV8BXbl-JqNJg _model_server_result.datetime_utc '2025-03-02 22:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":214}' # _entry.id 2OJE # _exptl.entry_id 2OJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OJE _cell.length_a 137.735 _cell.length_b 179.555 _cell.length_c 179.952 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA hexadecameric 16 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,M,N,O,P 1 1 E,F,G,H,K,L,Q,R,S 2 1 A,B,C,D,I,J,M,N,O,P 3 1,2 E,F,G,H,K,L,Q,R,S 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 -x+1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 68.8675 89.7775 89.976 4 'crystal symmetry operation' 8_445 x-1/2,-y-1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 -68.8675 -89.7775 89.976 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 107 1_555 A SG CYS 162 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 106 E CYS 107 1_555 E SG CYS 162 E CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 F SG CYS 15 F CYS 15 1_555 F SG CYS 79 F CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 F SG CYS 117 F CYS 117 1_555 F SG CYS 173 F CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A C PHE 21 A PHE 22 1_555 A N MSE 22 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 22 A MSE 23 1_555 A N PHE 23 A PHE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ASP 34 A ASP 35 1_555 A N MSE 35 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 35 A MSE 36 1_555 A N ALA 36 A ALA 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ILE 71 A ILE 72 1_555 A N MSE 72 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 72 A MSE 73 1_555 A N THR 73 A THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 E C PHE 21 E PHE 22 1_555 E N MSE 22 E MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 E C MSE 22 E MSE 23 1_555 E N PHE 23 E PHE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 E C ASP 34 E ASP 35 1_555 E N MSE 35 E MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 E C MSE 35 E MSE 36 1_555 E N ALA 36 E ALA 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 E C ILE 71 E ILE 72 1_555 E N MSE 72 E MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 E C MSE 72 E MSE 73 1_555 E N THR 73 E THR 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 279 n n P O2 PO4 sing 280 n n P O3 PO4 sing 281 n n P O4 PO4 sing 282 n n # _atom_sites.entry_id 2OJE _atom_sites.fract_transf_matrix[1][1] 0.00726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 PO4 C 1 202 2 PO4 PO4 . J 5 PO4 D 1 214 1 PO4 PO4 . K 5 PO4 E 1 204 4 PO4 PO4 . L 5 PO4 H 1 214 3 PO4 PO4 . M 6 HOH A 1 182 7 HOH HOH . M 6 HOH A 2 183 14 HOH HOH . M 6 HOH A 3 184 27 HOH HOH . M 6 HOH A 4 185 29 HOH HOH . M 6 HOH A 5 186 32 HOH HOH . M 6 HOH A 6 187 34 HOH HOH . M 6 HOH A 7 188 36 HOH HOH . M 6 HOH A 8 189 38 HOH HOH . M 6 HOH A 9 190 39 HOH HOH . M 6 HOH A 10 191 41 HOH HOH . M 6 HOH A 11 192 46 HOH HOH . M 6 HOH A 12 193 48 HOH HOH . M 6 HOH A 13 194 52 HOH HOH . M 6 HOH A 14 195 56 HOH HOH . M 6 HOH A 15 196 71 HOH HOH . M 6 HOH A 16 197 87 HOH HOH . M 6 HOH A 17 198 97 HOH HOH . M 6 HOH A 18 199 98 HOH HOH . M 6 HOH A 19 200 99 HOH HOH . M 6 HOH A 20 201 100 HOH HOH . M 6 HOH A 21 202 111 HOH HOH . M 6 HOH A 22 203 114 HOH HOH . M 6 HOH A 23 204 115 HOH HOH . M 6 HOH A 24 205 116 HOH HOH . M 6 HOH A 25 206 118 HOH HOH . N 6 HOH B 1 191 4 HOH HOH . N 6 HOH B 2 192 12 HOH HOH . N 6 HOH B 3 193 20 HOH HOH . N 6 HOH B 4 194 24 HOH HOH . N 6 HOH B 5 195 28 HOH HOH . N 6 HOH B 6 196 33 HOH HOH . N 6 HOH B 7 197 53 HOH HOH . N 6 HOH B 8 198 59 HOH HOH . N 6 HOH B 9 199 60 HOH HOH . N 6 HOH B 10 200 68 HOH HOH . N 6 HOH B 11 201 69 HOH HOH . N 6 HOH B 12 202 73 HOH HOH . N 6 HOH B 13 203 74 HOH HOH . N 6 HOH B 14 204 77 HOH HOH . N 6 HOH B 15 205 78 HOH HOH . N 6 HOH B 16 206 79 HOH HOH . N 6 HOH B 17 207 82 HOH HOH . N 6 HOH B 18 208 84 HOH HOH . N 6 HOH B 19 209 85 HOH HOH . N 6 HOH B 20 210 91 HOH HOH . N 6 HOH B 21 211 92 HOH HOH . N 6 HOH B 22 212 106 HOH HOH . N 6 HOH B 23 213 107 HOH HOH . O 6 HOH C 1 83 83 HOH HOH . P 6 HOH D 1 215 3 HOH HOH . P 6 HOH D 2 216 9 HOH HOH . P 6 HOH D 3 217 19 HOH HOH . P 6 HOH D 4 218 21 HOH HOH . P 6 HOH D 5 219 30 HOH HOH . P 6 HOH D 6 220 37 HOH HOH . P 6 HOH D 7 221 47 HOH HOH . P 6 HOH D 8 222 54 HOH HOH . P 6 HOH D 9 223 57 HOH HOH . P 6 HOH D 10 224 63 HOH HOH . P 6 HOH D 11 225 64 HOH HOH . P 6 HOH D 12 226 66 HOH HOH . P 6 HOH D 13 227 70 HOH HOH . P 6 HOH D 14 228 76 HOH HOH . P 6 HOH D 15 229 88 HOH HOH . P 6 HOH D 16 230 89 HOH HOH . P 6 HOH D 17 231 93 HOH HOH . P 6 HOH D 18 232 102 HOH HOH . P 6 HOH D 19 233 117 HOH HOH . Q 6 HOH E 1 205 1 HOH HOH . Q 6 HOH E 2 206 2 HOH HOH . Q 6 HOH E 3 207 6 HOH HOH . Q 6 HOH E 4 208 8 HOH HOH . Q 6 HOH E 5 209 13 HOH HOH . Q 6 HOH E 6 210 18 HOH HOH . Q 6 HOH E 7 211 23 HOH HOH . Q 6 HOH E 8 212 25 HOH HOH . Q 6 HOH E 9 213 26 HOH HOH . Q 6 HOH E 10 214 31 HOH HOH . Q 6 HOH E 11 215 40 HOH HOH . Q 6 HOH E 12 216 43 HOH HOH . Q 6 HOH E 13 217 44 HOH HOH . Q 6 HOH E 14 218 45 HOH HOH . Q 6 HOH E 15 219 49 HOH HOH . Q 6 HOH E 16 220 50 HOH HOH . Q 6 HOH E 17 221 55 HOH HOH . Q 6 HOH E 18 222 58 HOH HOH . Q 6 HOH E 19 223 61 HOH HOH . Q 6 HOH E 20 224 72 HOH HOH . Q 6 HOH E 21 225 75 HOH HOH . Q 6 HOH E 22 226 80 HOH HOH . Q 6 HOH E 23 227 81 HOH HOH . Q 6 HOH E 24 228 86 HOH HOH . Q 6 HOH E 25 229 94 HOH HOH . Q 6 HOH E 26 230 95 HOH HOH . Q 6 HOH E 27 231 96 HOH HOH . Q 6 HOH E 28 232 101 HOH HOH . Q 6 HOH E 29 233 103 HOH HOH . Q 6 HOH E 30 234 104 HOH HOH . Q 6 HOH E 31 235 108 HOH HOH . Q 6 HOH E 32 236 109 HOH HOH . Q 6 HOH E 33 237 110 HOH HOH . Q 6 HOH E 34 238 112 HOH HOH . R 6 HOH F 1 191 10 HOH HOH . R 6 HOH F 2 192 15 HOH HOH . R 6 HOH F 3 193 16 HOH HOH . R 6 HOH F 4 194 62 HOH HOH . S 6 HOH H 1 215 5 HOH HOH . S 6 HOH H 2 216 11 HOH HOH . S 6 HOH H 3 217 17 HOH HOH . S 6 HOH H 4 218 22 HOH HOH . S 6 HOH H 5 219 35 HOH HOH . S 6 HOH H 6 220 42 HOH HOH . S 6 HOH H 7 221 51 HOH HOH . S 6 HOH H 8 222 65 HOH HOH . S 6 HOH H 9 223 67 HOH HOH . S 6 HOH H 10 224 90 HOH HOH . S 6 HOH H 11 225 105 HOH HOH . S 6 HOH H 12 226 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . L 5 46.053 -44.818 22.91 1 51.85 ? P PO4 214 H 1 HETATM 2 O O1 PO4 . . . L 5 45.521 -45.992 23.66 1 51.11 ? O1 PO4 214 H 1 HETATM 3 O O2 PO4 . . . L 5 44.981 -43.801 22.748 1 51.25 ? O2 PO4 214 H 1 HETATM 4 O O3 PO4 . . . L 5 47.189 -44.23 23.659 1 53.29 ? O3 PO4 214 H 1 HETATM 5 O O4 PO4 . . . L 5 46.521 -45.25 21.576 1 52.45 ? O4 PO4 214 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 770 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #