data_2OKB
#
_model_server_result.job_id            0mRAllyNo9yaedEr2FRoWw 
_model_server_result.datetime_utc      '2024-10-10 09:25:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2okb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1301}' 
#
_entry.id    2OKB 
#
_exptl.entry_id    2OKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2OKB 
_cell.length_a            105.26 
_cell.length_b            105.26 
_cell.length_c            59.29 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA nonameric 9 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.63 91.157834 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -52.63 91.157834 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2OKB 
_atom_sites.fract_transf_matrix[1][1]    0.0095 
_atom_sites.fract_transf_matrix[1][2]    0.005485 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01097 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 1201 1201 SO4 SO4 . 
E 3 CL A 1 1402 1402 CL CL . 
F 4 EDO A 1 1302 1302 EDO EDO . 
G 2 SO4 B 1 1202 1202 SO4 SO4 . 
H 3 CL B 1 1401 1401 CL CL . 
I 4 EDO B 1 1301 1301 EDO EDO . 
J 4 EDO B 1 1303 1303 EDO EDO . 
K 2 SO4 C 1 1203 1203 SO4 SO4 . 
L 5 HOH A 1 1403 3 HOH HOH . 
L 5 HOH A 2 1404 4 HOH HOH . 
L 5 HOH A 3 1405 7 HOH HOH . 
L 5 HOH A 4 1406 8 HOH HOH . 
L 5 HOH A 5 1407 11 HOH HOH . 
L 5 HOH A 6 1408 12 HOH HOH . 
L 5 HOH A 7 1409 15 HOH HOH . 
L 5 HOH A 8 1410 18 HOH HOH . 
L 5 HOH A 9 1411 20 HOH HOH . 
L 5 HOH A 10 1412 21 HOH HOH . 
L 5 HOH A 11 1413 23 HOH HOH . 
L 5 HOH A 12 1414 26 HOH HOH . 
L 5 HOH A 13 1415 36 HOH HOH . 
L 5 HOH A 14 1416 39 HOH HOH . 
L 5 HOH A 15 1417 45 HOH HOH . 
L 5 HOH A 16 1418 49 HOH HOH . 
L 5 HOH A 17 1419 50 HOH HOH . 
L 5 HOH A 18 1420 52 HOH HOH . 
L 5 HOH A 19 1421 53 HOH HOH . 
L 5 HOH A 20 1422 55 HOH HOH . 
L 5 HOH A 21 1423 57 HOH HOH . 
L 5 HOH A 22 1424 58 HOH HOH . 
L 5 HOH A 23 1425 60 HOH HOH . 
L 5 HOH A 24 1426 61 HOH HOH . 
L 5 HOH A 25 1427 64 HOH HOH . 
L 5 HOH A 26 1428 70 HOH HOH . 
L 5 HOH A 27 1429 71 HOH HOH . 
L 5 HOH A 28 1430 73 HOH HOH . 
L 5 HOH A 29 1431 76 HOH HOH . 
L 5 HOH A 30 1432 79 HOH HOH . 
L 5 HOH A 31 1433 82 HOH HOH . 
L 5 HOH A 32 1434 83 HOH HOH . 
L 5 HOH A 33 1435 85 HOH HOH . 
L 5 HOH A 34 1436 86 HOH HOH . 
L 5 HOH A 35 1437 88 HOH HOH . 
L 5 HOH A 36 1438 90 HOH HOH . 
L 5 HOH A 37 1439 94 HOH HOH . 
L 5 HOH A 38 1440 98 HOH HOH . 
L 5 HOH A 39 1441 99 HOH HOH . 
L 5 HOH A 40 1442 102 HOH HOH . 
L 5 HOH A 41 1443 105 HOH HOH . 
L 5 HOH A 42 1444 108 HOH HOH . 
L 5 HOH A 43 1445 109 HOH HOH . 
L 5 HOH A 44 1446 111 HOH HOH . 
L 5 HOH A 45 1447 113 HOH HOH . 
L 5 HOH A 46 1448 114 HOH HOH . 
L 5 HOH A 47 1449 115 HOH HOH . 
L 5 HOH A 48 1450 116 HOH HOH . 
L 5 HOH A 49 1451 117 HOH HOH . 
L 5 HOH A 50 1452 118 HOH HOH . 
L 5 HOH A 51 1453 121 HOH HOH . 
L 5 HOH A 52 1454 123 HOH HOH . 
L 5 HOH A 53 1455 125 HOH HOH . 
L 5 HOH A 54 1456 127 HOH HOH . 
L 5 HOH A 55 1457 132 HOH HOH . 
L 5 HOH A 56 1458 134 HOH HOH . 
L 5 HOH A 57 1459 137 HOH HOH . 
L 5 HOH A 58 1460 142 HOH HOH . 
L 5 HOH A 59 1461 144 HOH HOH . 
L 5 HOH A 60 1462 150 HOH HOH . 
L 5 HOH A 61 1463 151 HOH HOH . 
L 5 HOH A 62 1464 153 HOH HOH . 
L 5 HOH A 63 1465 155 HOH HOH . 
L 5 HOH A 64 1466 158 HOH HOH . 
L 5 HOH A 65 1467 161 HOH HOH . 
L 5 HOH A 66 1468 165 HOH HOH . 
L 5 HOH A 67 1469 170 HOH HOH . 
L 5 HOH A 68 1470 175 HOH HOH . 
L 5 HOH A 69 1471 181 HOH HOH . 
L 5 HOH A 70 1472 183 HOH HOH . 
L 5 HOH A 71 1473 184 HOH HOH . 
L 5 HOH A 72 1474 185 HOH HOH . 
L 5 HOH A 73 1475 187 HOH HOH . 
L 5 HOH A 74 1476 188 HOH HOH . 
L 5 HOH A 75 1477 201 HOH HOH . 
L 5 HOH A 76 1478 205 HOH HOH . 
L 5 HOH A 77 1479 206 HOH HOH . 
L 5 HOH A 78 1480 215 HOH HOH . 
L 5 HOH A 79 1481 218 HOH HOH . 
L 5 HOH A 80 1482 219 HOH HOH . 
L 5 HOH A 81 1483 223 HOH HOH . 
L 5 HOH A 82 1484 225 HOH HOH . 
L 5 HOH A 83 1485 226 HOH HOH . 
L 5 HOH A 84 1486 227 HOH HOH . 
L 5 HOH A 85 1487 229 HOH HOH . 
L 5 HOH A 86 1488 230 HOH HOH . 
L 5 HOH A 87 1489 233 HOH HOH . 
M 5 HOH B 1 1402 5 HOH HOH . 
M 5 HOH B 2 1403 13 HOH HOH . 
M 5 HOH B 3 1404 22 HOH HOH . 
M 5 HOH B 4 1405 24 HOH HOH . 
M 5 HOH B 5 1406 27 HOH HOH . 
M 5 HOH B 6 1407 28 HOH HOH . 
M 5 HOH B 7 1408 33 HOH HOH . 
M 5 HOH B 8 1409 38 HOH HOH . 
M 5 HOH B 9 1410 40 HOH HOH . 
M 5 HOH B 10 1411 42 HOH HOH . 
M 5 HOH B 11 1412 44 HOH HOH . 
M 5 HOH B 12 1413 46 HOH HOH . 
M 5 HOH B 13 1414 51 HOH HOH . 
M 5 HOH B 14 1415 54 HOH HOH . 
M 5 HOH B 15 1416 56 HOH HOH . 
M 5 HOH B 16 1417 59 HOH HOH . 
M 5 HOH B 17 1418 62 HOH HOH . 
M 5 HOH B 18 1419 65 HOH HOH . 
M 5 HOH B 19 1420 66 HOH HOH . 
M 5 HOH B 20 1421 69 HOH HOH . 
M 5 HOH B 21 1422 72 HOH HOH . 
M 5 HOH B 22 1423 77 HOH HOH . 
M 5 HOH B 23 1424 80 HOH HOH . 
M 5 HOH B 24 1425 95 HOH HOH . 
M 5 HOH B 25 1426 96 HOH HOH . 
M 5 HOH B 26 1427 97 HOH HOH . 
M 5 HOH B 27 1428 100 HOH HOH . 
M 5 HOH B 28 1429 101 HOH HOH . 
M 5 HOH B 29 1430 104 HOH HOH . 
M 5 HOH B 30 1431 106 HOH HOH . 
M 5 HOH B 31 1432 110 HOH HOH . 
M 5 HOH B 32 1433 112 HOH HOH . 
M 5 HOH B 33 1434 120 HOH HOH . 
M 5 HOH B 34 1435 122 HOH HOH . 
M 5 HOH B 35 1436 124 HOH HOH . 
M 5 HOH B 36 1437 129 HOH HOH . 
M 5 HOH B 37 1438 130 HOH HOH . 
M 5 HOH B 38 1439 133 HOH HOH . 
M 5 HOH B 39 1440 138 HOH HOH . 
M 5 HOH B 40 1441 146 HOH HOH . 
M 5 HOH B 41 1442 147 HOH HOH . 
M 5 HOH B 42 1443 148 HOH HOH . 
M 5 HOH B 43 1444 157 HOH HOH . 
M 5 HOH B 44 1445 159 HOH HOH . 
M 5 HOH B 45 1446 160 HOH HOH . 
M 5 HOH B 46 1447 166 HOH HOH . 
M 5 HOH B 47 1448 169 HOH HOH . 
M 5 HOH B 48 1449 173 HOH HOH . 
M 5 HOH B 49 1450 182 HOH HOH . 
M 5 HOH B 50 1451 186 HOH HOH . 
M 5 HOH B 51 1452 189 HOH HOH . 
M 5 HOH B 52 1453 190 HOH HOH . 
M 5 HOH B 53 1454 191 HOH HOH . 
M 5 HOH B 54 1455 194 HOH HOH . 
M 5 HOH B 55 1456 196 HOH HOH . 
M 5 HOH B 56 1457 198 HOH HOH . 
M 5 HOH B 57 1458 199 HOH HOH . 
M 5 HOH B 58 1459 207 HOH HOH . 
M 5 HOH B 59 1460 208 HOH HOH . 
M 5 HOH B 60 1461 209 HOH HOH . 
M 5 HOH B 61 1462 210 HOH HOH . 
M 5 HOH B 62 1463 213 HOH HOH . 
M 5 HOH B 63 1464 216 HOH HOH . 
M 5 HOH B 64 1465 217 HOH HOH . 
M 5 HOH B 65 1466 220 HOH HOH . 
M 5 HOH B 66 1467 224 HOH HOH . 
M 5 HOH B 67 1468 228 HOH HOH . 
M 5 HOH B 68 1469 231 HOH HOH . 
M 5 HOH B 69 1470 234 HOH HOH . 
M 5 HOH B 70 1471 235 HOH HOH . 
M 5 HOH B 71 1472 236 HOH HOH . 
N 5 HOH C 1 1204 1 HOH HOH . 
N 5 HOH C 2 1205 2 HOH HOH . 
N 5 HOH C 3 1206 6 HOH HOH . 
N 5 HOH C 4 1207 9 HOH HOH . 
N 5 HOH C 5 1208 10 HOH HOH . 
N 5 HOH C 6 1209 14 HOH HOH . 
N 5 HOH C 7 1210 16 HOH HOH . 
N 5 HOH C 8 1211 17 HOH HOH . 
N 5 HOH C 9 1212 19 HOH HOH . 
N 5 HOH C 10 1213 25 HOH HOH . 
N 5 HOH C 11 1214 29 HOH HOH . 
N 5 HOH C 12 1215 30 HOH HOH . 
N 5 HOH C 13 1216 31 HOH HOH . 
N 5 HOH C 14 1217 32 HOH HOH . 
N 5 HOH C 15 1218 34 HOH HOH . 
N 5 HOH C 16 1219 35 HOH HOH . 
N 5 HOH C 17 1220 37 HOH HOH . 
N 5 HOH C 18 1221 41 HOH HOH . 
N 5 HOH C 19 1222 43 HOH HOH . 
N 5 HOH C 20 1223 47 HOH HOH . 
N 5 HOH C 21 1224 48 HOH HOH . 
N 5 HOH C 22 1225 63 HOH HOH . 
N 5 HOH C 23 1226 67 HOH HOH . 
N 5 HOH C 24 1227 68 HOH HOH . 
N 5 HOH C 25 1228 74 HOH HOH . 
N 5 HOH C 26 1229 75 HOH HOH . 
N 5 HOH C 27 1230 78 HOH HOH . 
N 5 HOH C 28 1231 81 HOH HOH . 
N 5 HOH C 29 1232 84 HOH HOH . 
N 5 HOH C 30 1233 87 HOH HOH . 
N 5 HOH C 31 1234 89 HOH HOH . 
N 5 HOH C 32 1235 91 HOH HOH . 
N 5 HOH C 33 1236 92 HOH HOH . 
N 5 HOH C 34 1237 93 HOH HOH . 
N 5 HOH C 35 1238 103 HOH HOH . 
N 5 HOH C 36 1239 107 HOH HOH . 
N 5 HOH C 37 1240 119 HOH HOH . 
N 5 HOH C 38 1241 126 HOH HOH . 
N 5 HOH C 39 1242 128 HOH HOH . 
N 5 HOH C 40 1243 131 HOH HOH . 
N 5 HOH C 41 1244 135 HOH HOH . 
N 5 HOH C 42 1245 136 HOH HOH . 
N 5 HOH C 43 1246 139 HOH HOH . 
N 5 HOH C 44 1247 140 HOH HOH . 
N 5 HOH C 45 1248 141 HOH HOH . 
N 5 HOH C 46 1249 143 HOH HOH . 
N 5 HOH C 47 1250 145 HOH HOH . 
N 5 HOH C 48 1251 149 HOH HOH . 
N 5 HOH C 49 1252 152 HOH HOH . 
N 5 HOH C 50 1253 154 HOH HOH . 
N 5 HOH C 51 1254 156 HOH HOH . 
N 5 HOH C 52 1255 162 HOH HOH . 
N 5 HOH C 53 1256 163 HOH HOH . 
N 5 HOH C 54 1257 164 HOH HOH . 
N 5 HOH C 55 1258 167 HOH HOH . 
N 5 HOH C 56 1259 168 HOH HOH . 
N 5 HOH C 57 1260 171 HOH HOH . 
N 5 HOH C 58 1261 172 HOH HOH . 
N 5 HOH C 59 1262 174 HOH HOH . 
N 5 HOH C 60 1263 176 HOH HOH . 
N 5 HOH C 61 1264 177 HOH HOH . 
N 5 HOH C 62 1265 178 HOH HOH . 
N 5 HOH C 63 1266 179 HOH HOH . 
N 5 HOH C 64 1267 180 HOH HOH . 
N 5 HOH C 65 1268 192 HOH HOH . 
N 5 HOH C 66 1269 193 HOH HOH . 
N 5 HOH C 67 1270 195 HOH HOH . 
N 5 HOH C 68 1271 197 HOH HOH . 
N 5 HOH C 69 1272 200 HOH HOH . 
N 5 HOH C 70 1273 202 HOH HOH . 
N 5 HOH C 71 1274 203 HOH HOH . 
N 5 HOH C 72 1275 204 HOH HOH . 
N 5 HOH C 73 1276 211 HOH HOH . 
N 5 HOH C 74 1277 212 HOH HOH . 
N 5 HOH C 75 1278 214 HOH HOH . 
N 5 HOH C 76 1279 221 HOH HOH . 
N 5 HOH C 77 1280 222 HOH HOH . 
N 5 HOH C 78 1281 232 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 4 23.425 81.387 24.558 1 29.43 ? C1 EDO 1301 B 1 
HETATM 2 O O1 EDO . . . I 4 23.829 80.741 25.77 1 29.16 ? O1 EDO 1301 B 1 
HETATM 3 C C2 EDO . . . I 4 21.942 81.13 24.326 1 29.65 ? C2 EDO 1301 B 1 
HETATM 4 O O2 EDO . . . I 4 21.795 79.851 23.696 1 28.86 ? O2 EDO 1301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#