data_2OKD
#
_model_server_result.job_id            Wd_Bs9BiQZ3uU8C2TAQIlQ 
_model_server_result.datetime_utc      '2024-11-05 00:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2okd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    2OKD 
#
_exptl.entry_id    2OKD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2OKD 
_cell.length_a            120.01 
_cell.length_b            120.01 
_cell.length_c            50.3 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OKD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2OKD 
_atom_sites.fract_transf_matrix[1][1]    0.008333 
_atom_sites.fract_transf_matrix[1][2]    0.004811 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 200 200 CL CL . 
E 3 EDO A 1 201 201 EDO EDO . 
F 3 EDO A 1 202 202 EDO EDO . 
G 3 EDO A 1 204 204 EDO EDO . 
H 3 EDO B 1 203 203 EDO EDO . 
I 4 HOH A 1 205 5 HOH HOH . 
I 4 HOH A 2 206 8 HOH HOH . 
I 4 HOH A 3 207 14 HOH HOH . 
I 4 HOH A 4 208 15 HOH HOH . 
I 4 HOH A 5 209 20 HOH HOH . 
I 4 HOH A 6 210 21 HOH HOH . 
I 4 HOH A 7 211 26 HOH HOH . 
I 4 HOH A 8 212 27 HOH HOH . 
I 4 HOH A 9 213 29 HOH HOH . 
I 4 HOH A 10 214 30 HOH HOH . 
I 4 HOH A 11 215 32 HOH HOH . 
I 4 HOH A 12 216 33 HOH HOH . 
I 4 HOH A 13 217 35 HOH HOH . 
I 4 HOH A 14 218 38 HOH HOH . 
I 4 HOH A 15 219 47 HOH HOH . 
I 4 HOH A 16 220 49 HOH HOH . 
I 4 HOH A 17 221 51 HOH HOH . 
I 4 HOH A 18 222 55 HOH HOH . 
I 4 HOH A 19 223 57 HOH HOH . 
I 4 HOH A 20 224 59 HOH HOH . 
I 4 HOH A 21 225 60 HOH HOH . 
I 4 HOH A 22 226 62 HOH HOH . 
I 4 HOH A 23 227 64 HOH HOH . 
I 4 HOH A 24 228 67 HOH HOH . 
I 4 HOH A 25 229 71 HOH HOH . 
I 4 HOH A 26 230 74 HOH HOH . 
I 4 HOH A 27 231 75 HOH HOH . 
I 4 HOH A 28 232 78 HOH HOH . 
I 4 HOH A 29 233 81 HOH HOH . 
I 4 HOH A 30 234 82 HOH HOH . 
I 4 HOH A 31 235 84 HOH HOH . 
I 4 HOH A 32 236 87 HOH HOH . 
I 4 HOH A 33 237 88 HOH HOH . 
I 4 HOH A 34 238 93 HOH HOH . 
I 4 HOH A 35 239 103 HOH HOH . 
I 4 HOH A 36 240 110 HOH HOH . 
I 4 HOH A 37 241 114 HOH HOH . 
I 4 HOH A 38 242 116 HOH HOH . 
J 4 HOH B 1 204 2 HOH HOH . 
J 4 HOH B 2 205 6 HOH HOH . 
J 4 HOH B 3 206 7 HOH HOH . 
J 4 HOH B 4 207 11 HOH HOH . 
J 4 HOH B 5 208 12 HOH HOH . 
J 4 HOH B 6 209 17 HOH HOH . 
J 4 HOH B 7 210 18 HOH HOH . 
J 4 HOH B 8 211 19 HOH HOH . 
J 4 HOH B 9 212 22 HOH HOH . 
J 4 HOH B 10 213 24 HOH HOH . 
J 4 HOH B 11 214 28 HOH HOH . 
J 4 HOH B 12 215 34 HOH HOH . 
J 4 HOH B 13 216 37 HOH HOH . 
J 4 HOH B 14 217 39 HOH HOH . 
J 4 HOH B 15 218 40 HOH HOH . 
J 4 HOH B 16 219 45 HOH HOH . 
J 4 HOH B 17 220 48 HOH HOH . 
J 4 HOH B 18 221 50 HOH HOH . 
J 4 HOH B 19 222 52 HOH HOH . 
J 4 HOH B 20 223 58 HOH HOH . 
J 4 HOH B 21 224 63 HOH HOH . 
J 4 HOH B 22 225 66 HOH HOH . 
J 4 HOH B 23 226 69 HOH HOH . 
J 4 HOH B 24 227 72 HOH HOH . 
J 4 HOH B 25 228 73 HOH HOH . 
J 4 HOH B 26 229 85 HOH HOH . 
J 4 HOH B 27 230 86 HOH HOH . 
J 4 HOH B 28 231 92 HOH HOH . 
J 4 HOH B 29 232 94 HOH HOH . 
J 4 HOH B 30 233 101 HOH HOH . 
J 4 HOH B 31 234 106 HOH HOH . 
J 4 HOH B 32 235 107 HOH HOH . 
J 4 HOH B 33 236 108 HOH HOH . 
J 4 HOH B 34 237 109 HOH HOH . 
J 4 HOH B 35 238 111 HOH HOH . 
J 4 HOH B 36 239 113 HOH HOH . 
J 4 HOH B 37 240 115 HOH HOH . 
K 4 HOH C 1 148 1 HOH HOH . 
K 4 HOH C 2 149 3 HOH HOH . 
K 4 HOH C 3 150 4 HOH HOH . 
K 4 HOH C 4 151 9 HOH HOH . 
K 4 HOH C 5 152 10 HOH HOH . 
K 4 HOH C 6 153 13 HOH HOH . 
K 4 HOH C 7 154 16 HOH HOH . 
K 4 HOH C 8 155 25 HOH HOH . 
K 4 HOH C 9 156 31 HOH HOH . 
K 4 HOH C 10 157 36 HOH HOH . 
K 4 HOH C 11 158 41 HOH HOH . 
K 4 HOH C 12 159 42 HOH HOH . 
K 4 HOH C 13 160 43 HOH HOH . 
K 4 HOH C 14 161 44 HOH HOH . 
K 4 HOH C 15 162 46 HOH HOH . 
K 4 HOH C 16 163 53 HOH HOH . 
K 4 HOH C 17 164 54 HOH HOH . 
K 4 HOH C 18 165 56 HOH HOH . 
K 4 HOH C 19 166 61 HOH HOH . 
K 4 HOH C 20 167 65 HOH HOH . 
K 4 HOH C 21 168 70 HOH HOH . 
K 4 HOH C 22 169 76 HOH HOH . 
K 4 HOH C 23 170 77 HOH HOH . 
K 4 HOH C 24 171 79 HOH HOH . 
K 4 HOH C 25 172 80 HOH HOH . 
K 4 HOH C 26 173 83 HOH HOH . 
K 4 HOH C 27 174 89 HOH HOH . 
K 4 HOH C 28 175 90 HOH HOH . 
K 4 HOH C 29 176 91 HOH HOH . 
K 4 HOH C 30 177 95 HOH HOH . 
K 4 HOH C 31 178 96 HOH HOH . 
K 4 HOH C 32 179 97 HOH HOH . 
K 4 HOH C 33 180 98 HOH HOH . 
K 4 HOH C 34 181 99 HOH HOH . 
K 4 HOH C 35 182 100 HOH HOH . 
K 4 HOH C 36 183 102 HOH HOH . 
K 4 HOH C 37 184 104 HOH HOH . 
K 4 HOH C 38 185 105 HOH HOH . 
K 4 HOH C 39 186 112 HOH HOH . 
K 4 HOH C 40 187 117 HOH HOH . 
K 4 HOH C 41 188 118 HOH HOH . 
K 4 HOH C 42 189 119 HOH HOH . 
K 4 HOH C 43 190 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 15.823 -29.821 0.151 1 43.66 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . F 3 14.778 -29.768 -0.821 1 43.53 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . F 3 15.458 -28.916 1.311 1 43.61 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . F 3 14.328 -29.491 1.972 1 43.77 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#