data_2OKD # _model_server_result.job_id whQo24LqMvPO0d4MUUcWAA _model_server_result.datetime_utc '2024-11-05 00:18:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2okd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":204}' # _entry.id 2OKD # _exptl.entry_id 2OKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OKD _cell.length_a 120.01 _cell.length_b 120.01 _cell.length_c 50.3 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2OKD _atom_sites.fract_transf_matrix[1][1] 0.008333 _atom_sites.fract_transf_matrix[1][2] 0.004811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 200 200 CL CL . E 3 EDO A 1 201 201 EDO EDO . F 3 EDO A 1 202 202 EDO EDO . G 3 EDO A 1 204 204 EDO EDO . H 3 EDO B 1 203 203 EDO EDO . I 4 HOH A 1 205 5 HOH HOH . I 4 HOH A 2 206 8 HOH HOH . I 4 HOH A 3 207 14 HOH HOH . I 4 HOH A 4 208 15 HOH HOH . I 4 HOH A 5 209 20 HOH HOH . I 4 HOH A 6 210 21 HOH HOH . I 4 HOH A 7 211 26 HOH HOH . I 4 HOH A 8 212 27 HOH HOH . I 4 HOH A 9 213 29 HOH HOH . I 4 HOH A 10 214 30 HOH HOH . I 4 HOH A 11 215 32 HOH HOH . I 4 HOH A 12 216 33 HOH HOH . I 4 HOH A 13 217 35 HOH HOH . I 4 HOH A 14 218 38 HOH HOH . I 4 HOH A 15 219 47 HOH HOH . I 4 HOH A 16 220 49 HOH HOH . I 4 HOH A 17 221 51 HOH HOH . I 4 HOH A 18 222 55 HOH HOH . I 4 HOH A 19 223 57 HOH HOH . I 4 HOH A 20 224 59 HOH HOH . I 4 HOH A 21 225 60 HOH HOH . I 4 HOH A 22 226 62 HOH HOH . I 4 HOH A 23 227 64 HOH HOH . I 4 HOH A 24 228 67 HOH HOH . I 4 HOH A 25 229 71 HOH HOH . I 4 HOH A 26 230 74 HOH HOH . I 4 HOH A 27 231 75 HOH HOH . I 4 HOH A 28 232 78 HOH HOH . I 4 HOH A 29 233 81 HOH HOH . I 4 HOH A 30 234 82 HOH HOH . I 4 HOH A 31 235 84 HOH HOH . I 4 HOH A 32 236 87 HOH HOH . I 4 HOH A 33 237 88 HOH HOH . I 4 HOH A 34 238 93 HOH HOH . I 4 HOH A 35 239 103 HOH HOH . I 4 HOH A 36 240 110 HOH HOH . I 4 HOH A 37 241 114 HOH HOH . I 4 HOH A 38 242 116 HOH HOH . J 4 HOH B 1 204 2 HOH HOH . J 4 HOH B 2 205 6 HOH HOH . J 4 HOH B 3 206 7 HOH HOH . J 4 HOH B 4 207 11 HOH HOH . J 4 HOH B 5 208 12 HOH HOH . J 4 HOH B 6 209 17 HOH HOH . J 4 HOH B 7 210 18 HOH HOH . J 4 HOH B 8 211 19 HOH HOH . J 4 HOH B 9 212 22 HOH HOH . J 4 HOH B 10 213 24 HOH HOH . J 4 HOH B 11 214 28 HOH HOH . J 4 HOH B 12 215 34 HOH HOH . J 4 HOH B 13 216 37 HOH HOH . J 4 HOH B 14 217 39 HOH HOH . J 4 HOH B 15 218 40 HOH HOH . J 4 HOH B 16 219 45 HOH HOH . J 4 HOH B 17 220 48 HOH HOH . J 4 HOH B 18 221 50 HOH HOH . J 4 HOH B 19 222 52 HOH HOH . J 4 HOH B 20 223 58 HOH HOH . J 4 HOH B 21 224 63 HOH HOH . J 4 HOH B 22 225 66 HOH HOH . J 4 HOH B 23 226 69 HOH HOH . J 4 HOH B 24 227 72 HOH HOH . J 4 HOH B 25 228 73 HOH HOH . J 4 HOH B 26 229 85 HOH HOH . J 4 HOH B 27 230 86 HOH HOH . J 4 HOH B 28 231 92 HOH HOH . J 4 HOH B 29 232 94 HOH HOH . J 4 HOH B 30 233 101 HOH HOH . J 4 HOH B 31 234 106 HOH HOH . J 4 HOH B 32 235 107 HOH HOH . J 4 HOH B 33 236 108 HOH HOH . J 4 HOH B 34 237 109 HOH HOH . J 4 HOH B 35 238 111 HOH HOH . J 4 HOH B 36 239 113 HOH HOH . J 4 HOH B 37 240 115 HOH HOH . K 4 HOH C 1 148 1 HOH HOH . K 4 HOH C 2 149 3 HOH HOH . K 4 HOH C 3 150 4 HOH HOH . K 4 HOH C 4 151 9 HOH HOH . K 4 HOH C 5 152 10 HOH HOH . K 4 HOH C 6 153 13 HOH HOH . K 4 HOH C 7 154 16 HOH HOH . K 4 HOH C 8 155 25 HOH HOH . K 4 HOH C 9 156 31 HOH HOH . K 4 HOH C 10 157 36 HOH HOH . K 4 HOH C 11 158 41 HOH HOH . K 4 HOH C 12 159 42 HOH HOH . K 4 HOH C 13 160 43 HOH HOH . K 4 HOH C 14 161 44 HOH HOH . K 4 HOH C 15 162 46 HOH HOH . K 4 HOH C 16 163 53 HOH HOH . K 4 HOH C 17 164 54 HOH HOH . K 4 HOH C 18 165 56 HOH HOH . K 4 HOH C 19 166 61 HOH HOH . K 4 HOH C 20 167 65 HOH HOH . K 4 HOH C 21 168 70 HOH HOH . K 4 HOH C 22 169 76 HOH HOH . K 4 HOH C 23 170 77 HOH HOH . K 4 HOH C 24 171 79 HOH HOH . K 4 HOH C 25 172 80 HOH HOH . K 4 HOH C 26 173 83 HOH HOH . K 4 HOH C 27 174 89 HOH HOH . K 4 HOH C 28 175 90 HOH HOH . K 4 HOH C 29 176 91 HOH HOH . K 4 HOH C 30 177 95 HOH HOH . K 4 HOH C 31 178 96 HOH HOH . K 4 HOH C 32 179 97 HOH HOH . K 4 HOH C 33 180 98 HOH HOH . K 4 HOH C 34 181 99 HOH HOH . K 4 HOH C 35 182 100 HOH HOH . K 4 HOH C 36 183 102 HOH HOH . K 4 HOH C 37 184 104 HOH HOH . K 4 HOH C 38 185 105 HOH HOH . K 4 HOH C 39 186 112 HOH HOH . K 4 HOH C 40 187 117 HOH HOH . K 4 HOH C 41 188 118 HOH HOH . K 4 HOH C 42 189 119 HOH HOH . K 4 HOH C 43 190 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 16.375 -46.037 4.211 1 58.38 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . G 3 15.653 -46.726 3.19 1 58.54 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . G 3 17.742 -45.695 3.653 1 58.54 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . G 3 17.622 -44.581 2.76 1 58.49 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #