data_2OKE # _model_server_result.job_id 3nylTtbbyw9jmUC0H3Svxg _model_server_result.datetime_utc '2024-11-05 00:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 2OKE # _exptl.entry_id 2OKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OKE _cell.length_a 120.46 _cell.length_b 120.46 _cell.length_c 50.1 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE1 GLN 25 B GLN 25 1_555 F MG MG . B MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc2 F MG MG . B MG 300 1_555 K O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc3 F MG MG . B MG 300 1_555 H O1G DUP . C DUP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 F MG MG . B MG 300 1_555 H N3A DUP . C DUP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc5 F MG MG . B MG 300 1_555 H O1B DUP . C DUP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 128 n n C1 C2 EDO sing 129 n n C1 H11 EDO sing 130 n n C1 H12 EDO sing 131 n n O1 HO1 EDO sing 132 n n C2 O2 EDO sing 133 n n C2 H21 EDO sing 134 n n C2 H22 EDO sing 135 n n O2 HO2 EDO sing 136 n n # _atom_sites.entry_id 2OKE _atom_sites.fract_transf_matrix[1][1] 0.008302 _atom_sites.fract_transf_matrix[1][2] 0.004793 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 301 301 CL CL . E 3 DUP A 1 200 200 DUP DUP . F 4 MG B 1 300 300 MG MG . G 3 DUP B 1 201 201 DUP DUP . H 3 DUP C 1 202 202 DUP DUP . I 5 EDO C 1 401 401 EDO EDO . J 6 HOH A 1 302 4 HOH HOH . J 6 HOH A 2 303 9 HOH HOH . J 6 HOH A 3 304 12 HOH HOH . J 6 HOH A 4 305 17 HOH HOH . J 6 HOH A 5 306 22 HOH HOH . J 6 HOH A 6 307 31 HOH HOH . J 6 HOH A 7 308 36 HOH HOH . J 6 HOH A 8 309 38 HOH HOH . J 6 HOH A 9 310 40 HOH HOH . J 6 HOH A 10 311 48 HOH HOH . J 6 HOH A 11 312 51 HOH HOH . J 6 HOH A 12 313 53 HOH HOH . J 6 HOH A 13 314 56 HOH HOH . J 6 HOH A 14 315 59 HOH HOH . J 6 HOH A 15 316 67 HOH HOH . J 6 HOH A 16 317 70 HOH HOH . J 6 HOH A 17 318 71 HOH HOH . J 6 HOH A 18 319 73 HOH HOH . J 6 HOH A 19 320 76 HOH HOH . J 6 HOH A 20 321 78 HOH HOH . J 6 HOH A 21 322 83 HOH HOH . J 6 HOH A 22 323 87 HOH HOH . J 6 HOH A 23 324 101 HOH HOH . J 6 HOH A 24 325 104 HOH HOH . J 6 HOH A 25 326 106 HOH HOH . J 6 HOH A 26 327 108 HOH HOH . J 6 HOH A 27 328 110 HOH HOH . J 6 HOH A 28 329 112 HOH HOH . J 6 HOH A 29 330 117 HOH HOH . J 6 HOH A 30 331 120 HOH HOH . K 6 HOH B 1 301 3 HOH HOH . K 6 HOH B 2 302 5 HOH HOH . K 6 HOH B 3 303 6 HOH HOH . K 6 HOH B 4 304 8 HOH HOH . K 6 HOH B 5 305 10 HOH HOH . K 6 HOH B 6 306 14 HOH HOH . K 6 HOH B 7 307 16 HOH HOH . K 6 HOH B 8 308 18 HOH HOH . K 6 HOH B 9 309 20 HOH HOH . K 6 HOH B 10 310 24 HOH HOH . K 6 HOH B 11 311 25 HOH HOH . K 6 HOH B 12 312 26 HOH HOH . K 6 HOH B 13 313 28 HOH HOH . K 6 HOH B 14 314 29 HOH HOH . K 6 HOH B 15 315 30 HOH HOH . K 6 HOH B 16 316 34 HOH HOH . K 6 HOH B 17 317 35 HOH HOH . K 6 HOH B 18 318 43 HOH HOH . K 6 HOH B 19 319 44 HOH HOH . K 6 HOH B 20 320 47 HOH HOH . K 6 HOH B 21 321 52 HOH HOH . K 6 HOH B 22 322 54 HOH HOH . K 6 HOH B 23 323 55 HOH HOH . K 6 HOH B 24 324 57 HOH HOH . K 6 HOH B 25 325 58 HOH HOH . K 6 HOH B 26 326 60 HOH HOH . K 6 HOH B 27 327 61 HOH HOH . K 6 HOH B 28 328 64 HOH HOH . K 6 HOH B 29 329 65 HOH HOH . K 6 HOH B 30 330 66 HOH HOH . K 6 HOH B 31 331 69 HOH HOH . K 6 HOH B 32 332 75 HOH HOH . K 6 HOH B 33 333 77 HOH HOH . K 6 HOH B 34 334 79 HOH HOH . K 6 HOH B 35 335 80 HOH HOH . K 6 HOH B 36 336 81 HOH HOH . K 6 HOH B 37 337 82 HOH HOH . K 6 HOH B 38 338 85 HOH HOH . K 6 HOH B 39 339 86 HOH HOH . K 6 HOH B 40 340 97 HOH HOH . K 6 HOH B 41 341 99 HOH HOH . K 6 HOH B 42 342 100 HOH HOH . K 6 HOH B 43 343 111 HOH HOH . K 6 HOH B 44 344 116 HOH HOH . K 6 HOH B 45 345 118 HOH HOH . K 6 HOH B 46 346 119 HOH HOH . K 6 HOH B 47 347 121 HOH HOH . L 6 HOH C 1 402 1 HOH HOH . L 6 HOH C 2 403 2 HOH HOH . L 6 HOH C 3 404 7 HOH HOH . L 6 HOH C 4 405 11 HOH HOH . L 6 HOH C 5 406 13 HOH HOH . L 6 HOH C 6 407 15 HOH HOH . L 6 HOH C 7 408 19 HOH HOH . L 6 HOH C 8 409 21 HOH HOH . L 6 HOH C 9 410 23 HOH HOH . L 6 HOH C 10 411 27 HOH HOH . L 6 HOH C 11 412 32 HOH HOH . L 6 HOH C 12 413 33 HOH HOH . L 6 HOH C 13 414 37 HOH HOH . L 6 HOH C 14 415 39 HOH HOH . L 6 HOH C 15 416 41 HOH HOH . L 6 HOH C 16 417 42 HOH HOH . L 6 HOH C 17 418 45 HOH HOH . L 6 HOH C 18 419 46 HOH HOH . L 6 HOH C 19 420 49 HOH HOH . L 6 HOH C 20 421 50 HOH HOH . L 6 HOH C 21 422 62 HOH HOH . L 6 HOH C 22 423 63 HOH HOH . L 6 HOH C 23 424 68 HOH HOH . L 6 HOH C 24 425 72 HOH HOH . L 6 HOH C 25 426 74 HOH HOH . L 6 HOH C 26 427 84 HOH HOH . L 6 HOH C 27 428 88 HOH HOH . L 6 HOH C 28 429 89 HOH HOH . L 6 HOH C 29 430 90 HOH HOH . L 6 HOH C 30 431 91 HOH HOH . L 6 HOH C 31 432 92 HOH HOH . L 6 HOH C 32 433 93 HOH HOH . L 6 HOH C 33 434 94 HOH HOH . L 6 HOH C 34 435 95 HOH HOH . L 6 HOH C 35 436 96 HOH HOH . L 6 HOH C 36 437 98 HOH HOH . L 6 HOH C 37 438 102 HOH HOH . L 6 HOH C 38 439 105 HOH HOH . L 6 HOH C 39 440 107 HOH HOH . L 6 HOH C 40 441 109 HOH HOH . L 6 HOH C 41 442 113 HOH HOH . L 6 HOH C 42 443 114 HOH HOH . L 6 HOH C 43 444 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 5 -15.01 -31.1 -10.838 1 30.2 ? C1 EDO 401 C 1 HETATM 2 O O1 EDO . . . I 5 -14.667 -29.728 -10.648 1 30.56 ? O1 EDO 401 C 1 HETATM 3 C C2 EDO . . . I 5 -15.271 -31.363 -12.315 1 30.51 ? C2 EDO 401 C 1 HETATM 4 O O2 EDO . . . I 5 -16.022 -32.577 -12.438 1 30.37 ? O2 EDO 401 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #