data_2OKF # _model_server_result.job_id l7R4FvcKChGcMmnuykjFKQ _model_server_result.datetime_utc '2024-11-13 04:20:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2okf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":143}' # _entry.id 2OKF # _exptl.entry_id 2OKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OKF _cell.length_a 59.81 _cell.length_b 59.81 _cell.length_c 73.19 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 124 A LYS 123 1_555 A N MSE 125 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MSE 125 A MSE 124 1_555 A N LEU 126 A LEU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 B C LYS 124 B LYS 123 1_555 B N MSE 125 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C MSE 125 B MSE 124 1_555 B N LEU 126 B LEU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 2OKF _atom_sites.fract_transf_matrix[1][1] 0.01672 _atom_sites.fract_transf_matrix[1][2] 0.00965 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 140 2 CL CL . D 3 ACT A 1 141 12 ACT ACT . E 3 ACT A 1 142 13 ACT ACT . F 4 EDO A 1 143 3 EDO EDO . G 4 EDO A 1 144 4 EDO EDO . H 4 EDO A 1 145 6 EDO EDO . I 4 EDO A 1 146 8 EDO EDO . J 4 EDO A 1 147 9 EDO EDO . K 4 EDO A 1 148 11 EDO EDO . L 2 CL B 1 140 1 CL CL . M 4 EDO B 1 141 5 EDO EDO . N 4 EDO B 1 142 7 EDO EDO . O 4 EDO B 1 143 10 EDO EDO . P 5 HOH A 1 149 14 HOH HOH . P 5 HOH A 2 150 16 HOH HOH . P 5 HOH A 3 151 18 HOH HOH . P 5 HOH A 4 152 20 HOH HOH . P 5 HOH A 5 153 22 HOH HOH . P 5 HOH A 6 154 23 HOH HOH . P 5 HOH A 7 155 28 HOH HOH . P 5 HOH A 8 156 29 HOH HOH . P 5 HOH A 9 157 32 HOH HOH . P 5 HOH A 10 158 33 HOH HOH . P 5 HOH A 11 159 37 HOH HOH . P 5 HOH A 12 160 38 HOH HOH . P 5 HOH A 13 161 39 HOH HOH . P 5 HOH A 14 162 41 HOH HOH . P 5 HOH A 15 163 43 HOH HOH . P 5 HOH A 16 164 46 HOH HOH . P 5 HOH A 17 165 49 HOH HOH . P 5 HOH A 18 166 52 HOH HOH . P 5 HOH A 19 167 53 HOH HOH . P 5 HOH A 20 168 55 HOH HOH . P 5 HOH A 21 169 59 HOH HOH . P 5 HOH A 22 170 61 HOH HOH . P 5 HOH A 23 171 62 HOH HOH . P 5 HOH A 24 172 63 HOH HOH . P 5 HOH A 25 173 64 HOH HOH . P 5 HOH A 26 174 65 HOH HOH . P 5 HOH A 27 175 69 HOH HOH . P 5 HOH A 28 176 70 HOH HOH . P 5 HOH A 29 177 72 HOH HOH . P 5 HOH A 30 178 73 HOH HOH . P 5 HOH A 31 179 77 HOH HOH . P 5 HOH A 32 180 82 HOH HOH . P 5 HOH A 33 181 83 HOH HOH . P 5 HOH A 34 182 86 HOH HOH . P 5 HOH A 35 183 87 HOH HOH . P 5 HOH A 36 184 88 HOH HOH . P 5 HOH A 37 185 89 HOH HOH . P 5 HOH A 38 186 90 HOH HOH . P 5 HOH A 39 187 93 HOH HOH . P 5 HOH A 40 188 94 HOH HOH . P 5 HOH A 41 189 96 HOH HOH . P 5 HOH A 42 190 97 HOH HOH . P 5 HOH A 43 191 99 HOH HOH . P 5 HOH A 44 192 103 HOH HOH . P 5 HOH A 45 193 104 HOH HOH . P 5 HOH A 46 194 107 HOH HOH . P 5 HOH A 47 195 108 HOH HOH . P 5 HOH A 48 196 111 HOH HOH . P 5 HOH A 49 197 112 HOH HOH . P 5 HOH A 50 198 113 HOH HOH . P 5 HOH A 51 199 115 HOH HOH . P 5 HOH A 52 200 118 HOH HOH . P 5 HOH A 53 201 120 HOH HOH . P 5 HOH A 54 202 121 HOH HOH . P 5 HOH A 55 203 122 HOH HOH . P 5 HOH A 56 204 123 HOH HOH . P 5 HOH A 57 205 127 HOH HOH . P 5 HOH A 58 206 129 HOH HOH . P 5 HOH A 59 207 130 HOH HOH . P 5 HOH A 60 208 131 HOH HOH . P 5 HOH A 61 209 133 HOH HOH . P 5 HOH A 62 210 135 HOH HOH . P 5 HOH A 63 211 136 HOH HOH . P 5 HOH A 64 212 137 HOH HOH . P 5 HOH A 65 213 138 HOH HOH . P 5 HOH A 66 214 140 HOH HOH . P 5 HOH A 67 215 144 HOH HOH . P 5 HOH A 68 216 145 HOH HOH . P 5 HOH A 69 217 147 HOH HOH . P 5 HOH A 70 218 148 HOH HOH . P 5 HOH A 71 219 150 HOH HOH . P 5 HOH A 72 220 159 HOH HOH . P 5 HOH A 73 221 162 HOH HOH . P 5 HOH A 74 222 171 HOH HOH . P 5 HOH A 75 223 173 HOH HOH . P 5 HOH A 76 224 176 HOH HOH . P 5 HOH A 77 225 178 HOH HOH . P 5 HOH A 78 226 179 HOH HOH . P 5 HOH A 79 227 180 HOH HOH . P 5 HOH A 80 228 181 HOH HOH . P 5 HOH A 81 229 182 HOH HOH . P 5 HOH A 82 230 184 HOH HOH . P 5 HOH A 83 231 185 HOH HOH . P 5 HOH A 84 232 186 HOH HOH . P 5 HOH A 85 233 188 HOH HOH . P 5 HOH A 86 234 190 HOH HOH . P 5 HOH A 87 235 191 HOH HOH . P 5 HOH A 88 236 193 HOH HOH . P 5 HOH A 89 237 194 HOH HOH . P 5 HOH A 90 238 195 HOH HOH . P 5 HOH A 91 239 197 HOH HOH . P 5 HOH A 92 240 199 HOH HOH . P 5 HOH A 93 241 200 HOH HOH . P 5 HOH A 94 242 202 HOH HOH . P 5 HOH A 95 243 203 HOH HOH . P 5 HOH A 96 244 209 HOH HOH . P 5 HOH A 97 245 212 HOH HOH . P 5 HOH A 98 246 213 HOH HOH . P 5 HOH A 99 247 215 HOH HOH . P 5 HOH A 100 248 216 HOH HOH . P 5 HOH A 101 249 218 HOH HOH . P 5 HOH A 102 250 219 HOH HOH . P 5 HOH A 103 251 221 HOH HOH . P 5 HOH A 104 252 222 HOH HOH . P 5 HOH A 105 253 223 HOH HOH . P 5 HOH A 106 254 224 HOH HOH . P 5 HOH A 107 255 225 HOH HOH . P 5 HOH A 108 256 227 HOH HOH . P 5 HOH A 109 257 233 HOH HOH . P 5 HOH A 110 258 236 HOH HOH . P 5 HOH A 111 259 237 HOH HOH . P 5 HOH A 112 260 239 HOH HOH . P 5 HOH A 113 261 240 HOH HOH . P 5 HOH A 114 262 241 HOH HOH . P 5 HOH A 115 263 247 HOH HOH . P 5 HOH A 116 264 248 HOH HOH . P 5 HOH A 117 265 250 HOH HOH . P 5 HOH A 118 266 254 HOH HOH . P 5 HOH A 119 267 256 HOH HOH . P 5 HOH A 120 268 258 HOH HOH . P 5 HOH A 121 269 264 HOH HOH . P 5 HOH A 122 270 265 HOH HOH . P 5 HOH A 123 271 266 HOH HOH . P 5 HOH A 124 272 267 HOH HOH . P 5 HOH A 125 273 269 HOH HOH . P 5 HOH A 126 274 274 HOH HOH . P 5 HOH A 127 275 275 HOH HOH . P 5 HOH A 128 276 276 HOH HOH . P 5 HOH A 129 277 278 HOH HOH . P 5 HOH A 130 278 279 HOH HOH . P 5 HOH A 131 279 280 HOH HOH . P 5 HOH A 132 280 282 HOH HOH . P 5 HOH A 133 281 284 HOH HOH . P 5 HOH A 134 282 285 HOH HOH . P 5 HOH A 135 283 286 HOH HOH . P 5 HOH A 136 284 287 HOH HOH . P 5 HOH A 137 285 289 HOH HOH . P 5 HOH A 138 286 290 HOH HOH . P 5 HOH A 139 287 291 HOH HOH . P 5 HOH A 140 288 294 HOH HOH . P 5 HOH A 141 289 297 HOH HOH . Q 5 HOH B 1 144 15 HOH HOH . Q 5 HOH B 2 145 17 HOH HOH . Q 5 HOH B 3 146 19 HOH HOH . Q 5 HOH B 4 147 21 HOH HOH . Q 5 HOH B 5 148 24 HOH HOH . Q 5 HOH B 6 149 25 HOH HOH . Q 5 HOH B 7 150 26 HOH HOH . Q 5 HOH B 8 151 27 HOH HOH . Q 5 HOH B 9 152 30 HOH HOH . Q 5 HOH B 10 153 31 HOH HOH . Q 5 HOH B 11 154 34 HOH HOH . Q 5 HOH B 12 155 35 HOH HOH . Q 5 HOH B 13 156 36 HOH HOH . Q 5 HOH B 14 157 40 HOH HOH . Q 5 HOH B 15 158 42 HOH HOH . Q 5 HOH B 16 159 44 HOH HOH . Q 5 HOH B 17 160 45 HOH HOH . Q 5 HOH B 18 161 47 HOH HOH . Q 5 HOH B 19 162 48 HOH HOH . Q 5 HOH B 20 163 50 HOH HOH . Q 5 HOH B 21 164 51 HOH HOH . Q 5 HOH B 22 165 54 HOH HOH . Q 5 HOH B 23 166 56 HOH HOH . Q 5 HOH B 24 167 57 HOH HOH . Q 5 HOH B 25 168 58 HOH HOH . Q 5 HOH B 26 169 60 HOH HOH . Q 5 HOH B 27 170 66 HOH HOH . Q 5 HOH B 28 171 67 HOH HOH . Q 5 HOH B 29 172 68 HOH HOH . Q 5 HOH B 30 173 71 HOH HOH . Q 5 HOH B 31 174 74 HOH HOH . Q 5 HOH B 32 175 75 HOH HOH . Q 5 HOH B 33 176 76 HOH HOH . Q 5 HOH B 34 177 78 HOH HOH . Q 5 HOH B 35 178 79 HOH HOH . Q 5 HOH B 36 179 80 HOH HOH . Q 5 HOH B 37 180 81 HOH HOH . Q 5 HOH B 38 181 84 HOH HOH . Q 5 HOH B 39 182 85 HOH HOH . Q 5 HOH B 40 183 91 HOH HOH . Q 5 HOH B 41 184 92 HOH HOH . Q 5 HOH B 42 185 95 HOH HOH . Q 5 HOH B 43 186 98 HOH HOH . Q 5 HOH B 44 187 100 HOH HOH . Q 5 HOH B 45 188 101 HOH HOH . Q 5 HOH B 46 189 102 HOH HOH . Q 5 HOH B 47 190 105 HOH HOH . Q 5 HOH B 48 191 106 HOH HOH . Q 5 HOH B 49 192 109 HOH HOH . Q 5 HOH B 50 193 110 HOH HOH . Q 5 HOH B 51 194 114 HOH HOH . Q 5 HOH B 52 195 116 HOH HOH . Q 5 HOH B 53 196 117 HOH HOH . Q 5 HOH B 54 197 119 HOH HOH . Q 5 HOH B 55 198 124 HOH HOH . Q 5 HOH B 56 199 125 HOH HOH . Q 5 HOH B 57 200 126 HOH HOH . Q 5 HOH B 58 201 128 HOH HOH . Q 5 HOH B 59 202 132 HOH HOH . Q 5 HOH B 60 203 134 HOH HOH . Q 5 HOH B 61 204 139 HOH HOH . Q 5 HOH B 62 205 141 HOH HOH . Q 5 HOH B 63 206 142 HOH HOH . Q 5 HOH B 64 207 143 HOH HOH . Q 5 HOH B 65 208 146 HOH HOH . Q 5 HOH B 66 209 149 HOH HOH . Q 5 HOH B 67 210 151 HOH HOH . Q 5 HOH B 68 211 152 HOH HOH . Q 5 HOH B 69 212 153 HOH HOH . Q 5 HOH B 70 213 154 HOH HOH . Q 5 HOH B 71 214 155 HOH HOH . Q 5 HOH B 72 215 156 HOH HOH . Q 5 HOH B 73 216 157 HOH HOH . Q 5 HOH B 74 217 158 HOH HOH . Q 5 HOH B 75 218 160 HOH HOH . Q 5 HOH B 76 219 161 HOH HOH . Q 5 HOH B 77 220 163 HOH HOH . Q 5 HOH B 78 221 164 HOH HOH . Q 5 HOH B 79 222 165 HOH HOH . Q 5 HOH B 80 223 166 HOH HOH . Q 5 HOH B 81 224 167 HOH HOH . Q 5 HOH B 82 225 168 HOH HOH . Q 5 HOH B 83 226 169 HOH HOH . Q 5 HOH B 84 227 170 HOH HOH . Q 5 HOH B 85 228 172 HOH HOH . Q 5 HOH B 86 229 174 HOH HOH . Q 5 HOH B 87 230 175 HOH HOH . Q 5 HOH B 88 231 177 HOH HOH . Q 5 HOH B 89 232 183 HOH HOH . Q 5 HOH B 90 233 187 HOH HOH . Q 5 HOH B 91 234 189 HOH HOH . Q 5 HOH B 92 235 192 HOH HOH . Q 5 HOH B 93 236 196 HOH HOH . Q 5 HOH B 94 237 198 HOH HOH . Q 5 HOH B 95 238 201 HOH HOH . Q 5 HOH B 96 239 204 HOH HOH . Q 5 HOH B 97 240 205 HOH HOH . Q 5 HOH B 98 241 206 HOH HOH . Q 5 HOH B 99 242 207 HOH HOH . Q 5 HOH B 100 243 208 HOH HOH . Q 5 HOH B 101 244 210 HOH HOH . Q 5 HOH B 102 245 211 HOH HOH . Q 5 HOH B 103 246 214 HOH HOH . Q 5 HOH B 104 247 217 HOH HOH . Q 5 HOH B 105 248 220 HOH HOH . Q 5 HOH B 106 249 226 HOH HOH . Q 5 HOH B 107 250 228 HOH HOH . Q 5 HOH B 108 251 229 HOH HOH . Q 5 HOH B 109 252 230 HOH HOH . Q 5 HOH B 110 253 231 HOH HOH . Q 5 HOH B 111 254 232 HOH HOH . Q 5 HOH B 112 255 234 HOH HOH . Q 5 HOH B 113 256 235 HOH HOH . Q 5 HOH B 114 257 238 HOH HOH . Q 5 HOH B 115 258 242 HOH HOH . Q 5 HOH B 116 259 243 HOH HOH . Q 5 HOH B 117 260 244 HOH HOH . Q 5 HOH B 118 261 245 HOH HOH . Q 5 HOH B 119 262 246 HOH HOH . Q 5 HOH B 120 263 249 HOH HOH . Q 5 HOH B 121 264 251 HOH HOH . Q 5 HOH B 122 265 252 HOH HOH . Q 5 HOH B 123 266 253 HOH HOH . Q 5 HOH B 124 267 255 HOH HOH . Q 5 HOH B 125 268 257 HOH HOH . Q 5 HOH B 126 269 259 HOH HOH . Q 5 HOH B 127 270 260 HOH HOH . Q 5 HOH B 128 271 261 HOH HOH . Q 5 HOH B 129 272 262 HOH HOH . Q 5 HOH B 130 273 263 HOH HOH . Q 5 HOH B 131 274 268 HOH HOH . Q 5 HOH B 132 275 270 HOH HOH . Q 5 HOH B 133 276 271 HOH HOH . Q 5 HOH B 134 277 272 HOH HOH . Q 5 HOH B 135 278 273 HOH HOH . Q 5 HOH B 136 279 277 HOH HOH . Q 5 HOH B 137 280 281 HOH HOH . Q 5 HOH B 138 281 283 HOH HOH . Q 5 HOH B 139 282 288 HOH HOH . Q 5 HOH B 140 283 292 HOH HOH . Q 5 HOH B 141 284 293 HOH HOH . Q 5 HOH B 142 285 295 HOH HOH . Q 5 HOH B 143 286 296 HOH HOH . Q 5 HOH B 144 287 298 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -3.5 5.715 23.01 1 28.69 ? C1 EDO 143 A 1 HETATM 2 O O1 EDO . . . F 4 -4.735 5.032 23.319 1 27.83 ? O1 EDO 143 A 1 HETATM 3 C C2 EDO . . . F 4 -2.84 6.112 24.314 1 25.67 ? C2 EDO 143 A 1 HETATM 4 O O2 EDO . . . F 4 -1.539 6.7 24.077 1 27.35 ? O2 EDO 143 A 1 # _model_server_stats.io_time_ms 125 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #