data_2OKK
#
_model_server_result.job_id            s5JtVDBELD7tXne3dd5mww 
_model_server_result.datetime_utc      '2024-11-29 18:17:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2okk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":587}' 
#
_entry.id    2OKK 
#
_exptl.entry_id    2OKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OKK 
_cell.length_a            78.251 
_cell.length_b            99.057 
_cell.length_c            120.009 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -60.0045 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 308 A HIS 395 1_555 A N LLP 309 A LLP 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C LLP 309 A LLP 396 1_555 A N MET 310 A MET 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 144 n n 
C1 C2 GOL sing 145 n n 
C1 H11 GOL sing 146 n n 
C1 H12 GOL sing 147 n n 
O1 HO1 GOL sing 148 n n 
C2 O2 GOL sing 149 n n 
C2 C3 GOL sing 150 n n 
C2 H2 GOL sing 151 n n 
O2 HO2 GOL sing 152 n n 
C3 O3 GOL sing 153 n n 
C3 H31 GOL sing 154 n n 
C3 H32 GOL sing 155 n n 
O3 HO3 GOL sing 156 n n 
#
_atom_sites.entry_id                     2OKK 
_atom_sites.fract_transf_matrix[1][1]    0.012779 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008333 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ABU A 1 585 585 ABU ABU . 
C 2 ABU A 1 586 586 ABU ABU . 
D 3 GOL A 1 587 587 GOL GOL . 
E 4 HOH A 1 588 588 HOH HOH . 
E 4 HOH A 2 589 589 HOH HOH . 
E 4 HOH A 3 590 590 HOH HOH . 
E 4 HOH A 4 591 591 HOH HOH . 
E 4 HOH A 5 592 592 HOH HOH . 
E 4 HOH A 6 593 593 HOH HOH . 
E 4 HOH A 7 594 594 HOH HOH . 
E 4 HOH A 8 595 595 HOH HOH . 
E 4 HOH A 9 596 596 HOH HOH . 
E 4 HOH A 10 597 597 HOH HOH . 
E 4 HOH A 11 598 598 HOH HOH . 
E 4 HOH A 12 599 599 HOH HOH . 
E 4 HOH A 13 600 600 HOH HOH . 
E 4 HOH A 14 601 601 HOH HOH . 
E 4 HOH A 15 602 602 HOH HOH . 
E 4 HOH A 16 603 603 HOH HOH . 
E 4 HOH A 17 604 604 HOH HOH . 
E 4 HOH A 18 605 605 HOH HOH . 
E 4 HOH A 19 606 606 HOH HOH . 
E 4 HOH A 20 607 607 HOH HOH . 
E 4 HOH A 21 608 608 HOH HOH . 
E 4 HOH A 22 609 609 HOH HOH . 
E 4 HOH A 23 610 610 HOH HOH . 
E 4 HOH A 24 611 611 HOH HOH . 
E 4 HOH A 25 612 612 HOH HOH . 
E 4 HOH A 26 613 613 HOH HOH . 
E 4 HOH A 27 614 614 HOH HOH . 
E 4 HOH A 28 615 615 HOH HOH . 
E 4 HOH A 29 616 616 HOH HOH . 
E 4 HOH A 30 617 617 HOH HOH . 
E 4 HOH A 31 618 618 HOH HOH . 
E 4 HOH A 32 619 619 HOH HOH . 
E 4 HOH A 33 620 620 HOH HOH . 
E 4 HOH A 34 621 621 HOH HOH . 
E 4 HOH A 35 622 622 HOH HOH . 
E 4 HOH A 36 623 623 HOH HOH . 
E 4 HOH A 37 624 624 HOH HOH . 
E 4 HOH A 38 625 625 HOH HOH . 
E 4 HOH A 39 626 626 HOH HOH . 
E 4 HOH A 40 627 627 HOH HOH . 
E 4 HOH A 41 628 628 HOH HOH . 
E 4 HOH A 42 629 629 HOH HOH . 
E 4 HOH A 43 630 630 HOH HOH . 
E 4 HOH A 44 631 631 HOH HOH . 
E 4 HOH A 45 632 632 HOH HOH . 
E 4 HOH A 46 633 633 HOH HOH . 
E 4 HOH A 47 634 634 HOH HOH . 
E 4 HOH A 48 635 635 HOH HOH . 
E 4 HOH A 49 636 636 HOH HOH . 
E 4 HOH A 50 637 637 HOH HOH . 
E 4 HOH A 51 638 638 HOH HOH . 
E 4 HOH A 52 639 639 HOH HOH . 
E 4 HOH A 53 640 640 HOH HOH . 
E 4 HOH A 54 641 641 HOH HOH . 
E 4 HOH A 55 642 642 HOH HOH . 
E 4 HOH A 56 643 643 HOH HOH . 
E 4 HOH A 57 644 644 HOH HOH . 
E 4 HOH A 58 645 645 HOH HOH . 
E 4 HOH A 59 646 646 HOH HOH . 
E 4 HOH A 60 647 647 HOH HOH . 
E 4 HOH A 61 648 648 HOH HOH . 
E 4 HOH A 62 649 649 HOH HOH . 
E 4 HOH A 63 650 650 HOH HOH . 
E 4 HOH A 64 651 651 HOH HOH . 
E 4 HOH A 65 652 652 HOH HOH . 
E 4 HOH A 66 653 653 HOH HOH . 
E 4 HOH A 67 654 654 HOH HOH . 
E 4 HOH A 68 655 655 HOH HOH . 
E 4 HOH A 69 656 656 HOH HOH . 
E 4 HOH A 70 657 657 HOH HOH . 
E 4 HOH A 71 658 658 HOH HOH . 
E 4 HOH A 72 659 659 HOH HOH . 
E 4 HOH A 73 660 660 HOH HOH . 
E 4 HOH A 74 661 661 HOH HOH . 
E 4 HOH A 75 662 662 HOH HOH . 
E 4 HOH A 76 663 663 HOH HOH . 
E 4 HOH A 77 664 664 HOH HOH . 
E 4 HOH A 78 665 665 HOH HOH . 
E 4 HOH A 79 666 666 HOH HOH . 
E 4 HOH A 80 667 667 HOH HOH . 
E 4 HOH A 81 668 668 HOH HOH . 
E 4 HOH A 82 669 669 HOH HOH . 
E 4 HOH A 83 670 670 HOH HOH . 
E 4 HOH A 84 671 671 HOH HOH . 
E 4 HOH A 85 672 672 HOH HOH . 
E 4 HOH A 86 673 673 HOH HOH . 
E 4 HOH A 87 674 674 HOH HOH . 
E 4 HOH A 88 675 675 HOH HOH . 
E 4 HOH A 89 676 676 HOH HOH . 
E 4 HOH A 90 677 677 HOH HOH . 
E 4 HOH A 91 678 678 HOH HOH . 
E 4 HOH A 92 679 679 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 12.88 31.034 -19.086 1 82.29 ? C1 GOL 587 A 1 
HETATM 2 O O1 GOL . . . D 3 11.483 30.817 -19.159 1 80.07 ? O1 GOL 587 A 1 
HETATM 3 C C2 GOL . . . D 3 13.599 29.799 -18.544 1 84.73 ? C2 GOL 587 A 1 
HETATM 4 O O2 GOL . . . D 3 14.273 30.12 -17.345 1 85.45 ? O2 GOL 587 A 1 
HETATM 5 C C3 GOL . . . D 3 14.616 29.273 -19.556 1 86.19 ? C3 GOL 587 A 1 
HETATM 6 O O3 GOL . . . D 3 15.003 27.954 -19.23 1 82.79 ? O3 GOL 587 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           393 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#