data_2OKQ # _model_server_result.job_id MTl8XVzHGobPx7OEcPEVNA _model_server_result.datetime_utc '2025-04-03 19:56:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2okq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":118}' # _entry.id 2OKQ # _exptl.entry_id 2OKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OKQ _cell.length_a 61.843 _cell.length_b 61.843 _cell.length_c 137.32 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,D,E 2 1,2 B,F 2 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 61.843 61.843 68.66 3 'crystal symmetry operation' 4_554 y+1/2,-x+1/2,z-1/4 0 1 0 -1 0 0 0 0 1 30.9215 30.9215 -34.33 4 'crystal symmetry operation' 6_555 x+1/2,-y+1/2,-z+3/4 1 0 0 0 -1 0 0 0 -1 30.9215 30.9215 102.99 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 72 A ASP 48 1_555 D NA NA . A NA 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A O GLY 73 A GLY 49 1_555 D NA NA . A NA 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 A OD2 ASP 77 A ASP 53 1_555 D NA NA . A NA 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc4 A OE1 GLN 108 A GLN 84 1_555 C NA NA . A NA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 C NA NA . A NA 118 1_555 E O HOH . A HOH 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 C NA NA . A NA 118 1_555 B O ASN 23 B ASN -1 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 C NA NA . A NA 118 1_555 B O PRO 98 B PRO 74 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc8 C NA NA . A NA 118 1_555 F O HOH . B HOH 123 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc9 D NA NA . A NA 119 1_555 E O HOH . A HOH 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 D NA NA . A NA 119 1_555 E O HOH . A HOH 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2OKQ _atom_sites.fract_transf_matrix[1][1] 0.01617 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 118 1 NA NA . D 2 NA A 1 119 2 NA NA . E 3 HOH A 1 120 5 HOH HOH . E 3 HOH A 2 121 6 HOH HOH . E 3 HOH A 3 122 7 HOH HOH . E 3 HOH A 4 123 8 HOH HOH . E 3 HOH A 5 124 9 HOH HOH . E 3 HOH A 6 125 10 HOH HOH . E 3 HOH A 7 126 11 HOH HOH . E 3 HOH A 8 127 12 HOH HOH . E 3 HOH A 9 128 15 HOH HOH . E 3 HOH A 10 129 20 HOH HOH . E 3 HOH A 11 130 21 HOH HOH . E 3 HOH A 12 131 22 HOH HOH . E 3 HOH A 13 132 23 HOH HOH . E 3 HOH A 14 133 26 HOH HOH . E 3 HOH A 15 134 27 HOH HOH . E 3 HOH A 16 135 28 HOH HOH . E 3 HOH A 17 136 30 HOH HOH . E 3 HOH A 18 137 31 HOH HOH . E 3 HOH A 19 138 33 HOH HOH . E 3 HOH A 20 139 35 HOH HOH . E 3 HOH A 21 140 36 HOH HOH . E 3 HOH A 22 141 37 HOH HOH . E 3 HOH A 23 142 38 HOH HOH . E 3 HOH A 24 143 39 HOH HOH . E 3 HOH A 25 144 40 HOH HOH . E 3 HOH A 26 145 43 HOH HOH . E 3 HOH A 27 146 45 HOH HOH . E 3 HOH A 28 147 46 HOH HOH . E 3 HOH A 29 148 47 HOH HOH . E 3 HOH A 30 149 48 HOH HOH . E 3 HOH A 31 150 50 HOH HOH . E 3 HOH A 32 151 53 HOH HOH . E 3 HOH A 33 152 54 HOH HOH . E 3 HOH A 34 153 56 HOH HOH . E 3 HOH A 35 154 57 HOH HOH . E 3 HOH A 36 155 58 HOH HOH . E 3 HOH A 37 156 61 HOH HOH . E 3 HOH A 38 157 62 HOH HOH . E 3 HOH A 39 158 63 HOH HOH . E 3 HOH A 40 159 64 HOH HOH . E 3 HOH A 41 160 65 HOH HOH . E 3 HOH A 42 161 66 HOH HOH . E 3 HOH A 43 162 67 HOH HOH . E 3 HOH A 44 163 68 HOH HOH . E 3 HOH A 45 164 70 HOH HOH . E 3 HOH A 46 165 71 HOH HOH . E 3 HOH A 47 166 76 HOH HOH . E 3 HOH A 48 167 77 HOH HOH . E 3 HOH A 49 168 78 HOH HOH . E 3 HOH A 50 169 85 HOH HOH . E 3 HOH A 51 170 86 HOH HOH . E 3 HOH A 52 171 87 HOH HOH . E 3 HOH A 53 172 89 HOH HOH . E 3 HOH A 54 173 90 HOH HOH . E 3 HOH A 55 174 92 HOH HOH . E 3 HOH A 56 175 94 HOH HOH . E 3 HOH A 57 176 95 HOH HOH . E 3 HOH A 58 177 96 HOH HOH . E 3 HOH A 59 178 101 HOH HOH . E 3 HOH A 60 179 109 HOH HOH . E 3 HOH A 61 180 110 HOH HOH . E 3 HOH A 62 181 113 HOH HOH . E 3 HOH A 63 182 115 HOH HOH . E 3 HOH A 64 183 116 HOH HOH . E 3 HOH A 65 184 117 HOH HOH . E 3 HOH A 66 185 118 HOH HOH . E 3 HOH A 67 186 120 HOH HOH . E 3 HOH A 68 187 121 HOH HOH . E 3 HOH A 69 188 122 HOH HOH . E 3 HOH A 70 189 123 HOH HOH . E 3 HOH A 71 190 124 HOH HOH . E 3 HOH A 72 191 125 HOH HOH . E 3 HOH A 73 192 126 HOH HOH . E 3 HOH A 74 193 127 HOH HOH . E 3 HOH A 75 194 128 HOH HOH . E 3 HOH A 76 195 129 HOH HOH . E 3 HOH A 77 196 130 HOH HOH . E 3 HOH A 78 197 132 HOH HOH . E 3 HOH A 79 198 133 HOH HOH . E 3 HOH A 80 199 135 HOH HOH . E 3 HOH A 81 200 136 HOH HOH . E 3 HOH A 82 201 141 HOH HOH . E 3 HOH A 83 202 147 HOH HOH . E 3 HOH A 84 203 148 HOH HOH . E 3 HOH A 85 204 149 HOH HOH . E 3 HOH A 86 205 151 HOH HOH . E 3 HOH A 87 206 152 HOH HOH . E 3 HOH A 88 207 159 HOH HOH . E 3 HOH A 89 208 161 HOH HOH . E 3 HOH A 90 209 162 HOH HOH . E 3 HOH A 91 210 163 HOH HOH . E 3 HOH A 92 211 164 HOH HOH . E 3 HOH A 93 212 165 HOH HOH . E 3 HOH A 94 213 166 HOH HOH . E 3 HOH A 95 214 168 HOH HOH . E 3 HOH A 96 215 170 HOH HOH . F 3 HOH B 1 118 3 HOH HOH . F 3 HOH B 2 119 4 HOH HOH . F 3 HOH B 3 120 13 HOH HOH . F 3 HOH B 4 121 14 HOH HOH . F 3 HOH B 5 122 16 HOH HOH . F 3 HOH B 6 123 17 HOH HOH . F 3 HOH B 7 124 18 HOH HOH . F 3 HOH B 8 125 19 HOH HOH . F 3 HOH B 9 126 24 HOH HOH . F 3 HOH B 10 127 25 HOH HOH . F 3 HOH B 11 128 29 HOH HOH . F 3 HOH B 12 129 32 HOH HOH . F 3 HOH B 13 130 34 HOH HOH . F 3 HOH B 14 131 41 HOH HOH . F 3 HOH B 15 132 42 HOH HOH . F 3 HOH B 16 133 44 HOH HOH . F 3 HOH B 17 134 49 HOH HOH . F 3 HOH B 18 135 51 HOH HOH . F 3 HOH B 19 136 52 HOH HOH . F 3 HOH B 20 137 55 HOH HOH . F 3 HOH B 21 138 59 HOH HOH . F 3 HOH B 22 139 60 HOH HOH . F 3 HOH B 23 140 69 HOH HOH . F 3 HOH B 24 141 72 HOH HOH . F 3 HOH B 25 142 73 HOH HOH . F 3 HOH B 26 143 74 HOH HOH . F 3 HOH B 27 144 75 HOH HOH . F 3 HOH B 28 145 79 HOH HOH . F 3 HOH B 29 146 80 HOH HOH . F 3 HOH B 30 147 81 HOH HOH . F 3 HOH B 31 148 82 HOH HOH . F 3 HOH B 32 149 83 HOH HOH . F 3 HOH B 33 150 84 HOH HOH . F 3 HOH B 34 151 88 HOH HOH . F 3 HOH B 35 152 91 HOH HOH . F 3 HOH B 36 153 93 HOH HOH . F 3 HOH B 37 154 97 HOH HOH . F 3 HOH B 38 155 98 HOH HOH . F 3 HOH B 39 156 99 HOH HOH . F 3 HOH B 40 157 100 HOH HOH . F 3 HOH B 41 158 102 HOH HOH . F 3 HOH B 42 159 103 HOH HOH . F 3 HOH B 43 160 104 HOH HOH . F 3 HOH B 44 161 105 HOH HOH . F 3 HOH B 45 162 106 HOH HOH . F 3 HOH B 46 163 107 HOH HOH . F 3 HOH B 47 164 108 HOH HOH . F 3 HOH B 48 165 111 HOH HOH . F 3 HOH B 49 166 112 HOH HOH . F 3 HOH B 50 167 114 HOH HOH . F 3 HOH B 51 168 119 HOH HOH . F 3 HOH B 52 169 131 HOH HOH . F 3 HOH B 53 170 134 HOH HOH . F 3 HOH B 54 171 137 HOH HOH . F 3 HOH B 55 172 138 HOH HOH . F 3 HOH B 56 173 139 HOH HOH . F 3 HOH B 57 174 140 HOH HOH . F 3 HOH B 58 175 142 HOH HOH . F 3 HOH B 59 176 143 HOH HOH . F 3 HOH B 60 177 144 HOH HOH . F 3 HOH B 61 178 145 HOH HOH . F 3 HOH B 62 179 146 HOH HOH . F 3 HOH B 63 180 150 HOH HOH . F 3 HOH B 64 181 153 HOH HOH . F 3 HOH B 65 182 154 HOH HOH . F 3 HOH B 66 183 155 HOH HOH . F 3 HOH B 67 184 156 HOH HOH . F 3 HOH B 68 185 157 HOH HOH . F 3 HOH B 69 186 158 HOH HOH . F 3 HOH B 70 187 160 HOH HOH . F 3 HOH B 71 188 167 HOH HOH . F 3 HOH B 72 189 169 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.507 _atom_site.Cartn_y 6.944 _atom_site.Cartn_z 24.384 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 118 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 684 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #