data_2OL3 # _model_server_result.job_id ubgyx77voar1vbFaBBBE_g _model_server_result.datetime_utc '2024-12-05 09:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ol3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 2OL3 # _exptl.entry_id 2OL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OL3 _cell.length_a 102.523 _cell.length_b 102.523 _cell.length_c 198.381 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 91 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 91 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 C SG CYS 203 H CYS 203 1_555 C SG CYS 259 H CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 D SG CYS 26 L CYS 25 1_555 D SG CYS 81 L CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2OL3 _atom_sites.fract_transf_matrix[1][1] 0.009754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 201 201 NAG NAG . G 7 HOH A 1 202 1 HOH HOH . G 7 HOH A 2 203 2 HOH HOH . G 7 HOH A 3 204 7 HOH HOH . G 7 HOH A 4 205 46 HOH HOH . G 7 HOH A 5 206 48 HOH HOH . G 7 HOH A 6 207 74 HOH HOH . G 7 HOH A 7 208 76 HOH HOH . G 7 HOH A 8 209 78 HOH HOH . G 7 HOH A 9 210 92 HOH HOH . G 7 HOH A 10 211 116 HOH HOH . G 7 HOH A 11 212 132 HOH HOH . H 7 HOH B 1 118 3 HOH HOH . H 7 HOH B 2 119 4 HOH HOH . H 7 HOH B 3 120 6 HOH HOH . H 7 HOH B 4 121 8 HOH HOH . H 7 HOH B 5 122 9 HOH HOH . H 7 HOH B 6 123 10 HOH HOH . H 7 HOH B 7 124 11 HOH HOH . H 7 HOH B 8 125 12 HOH HOH . H 7 HOH B 9 126 13 HOH HOH . H 7 HOH B 10 127 36 HOH HOH . H 7 HOH B 11 128 50 HOH HOH . H 7 HOH B 12 129 80 HOH HOH . H 7 HOH B 13 130 81 HOH HOH . H 7 HOH B 14 131 84 HOH HOH . H 7 HOH B 15 132 85 HOH HOH . H 7 HOH B 16 133 86 HOH HOH . H 7 HOH B 17 134 88 HOH HOH . H 7 HOH B 18 135 93 HOH HOH . H 7 HOH B 19 136 129 HOH HOH . H 7 HOH B 20 137 131 HOH HOH . I 7 HOH H 1 280 15 HOH HOH . I 7 HOH H 2 281 17 HOH HOH . I 7 HOH H 3 282 18 HOH HOH . I 7 HOH H 4 283 19 HOH HOH . I 7 HOH H 5 284 20 HOH HOH . I 7 HOH H 6 285 22 HOH HOH . I 7 HOH H 7 286 23 HOH HOH . I 7 HOH H 8 287 24 HOH HOH . I 7 HOH H 9 288 25 HOH HOH . I 7 HOH H 10 289 27 HOH HOH . I 7 HOH H 11 290 28 HOH HOH . I 7 HOH H 12 291 29 HOH HOH . I 7 HOH H 13 292 30 HOH HOH . I 7 HOH H 14 293 31 HOH HOH . I 7 HOH H 15 294 32 HOH HOH . I 7 HOH H 16 295 33 HOH HOH . I 7 HOH H 17 296 35 HOH HOH . I 7 HOH H 18 297 37 HOH HOH . I 7 HOH H 19 298 43 HOH HOH . I 7 HOH H 20 299 44 HOH HOH . I 7 HOH H 21 300 45 HOH HOH . I 7 HOH H 22 301 55 HOH HOH . I 7 HOH H 23 302 56 HOH HOH . I 7 HOH H 24 303 99 HOH HOH . I 7 HOH H 25 304 100 HOH HOH . I 7 HOH H 26 305 101 HOH HOH . I 7 HOH H 27 306 106 HOH HOH . I 7 HOH H 28 307 109 HOH HOH . I 7 HOH H 29 308 110 HOH HOH . I 7 HOH H 30 309 119 HOH HOH . I 7 HOH H 31 310 122 HOH HOH . I 7 HOH H 32 311 123 HOH HOH . I 7 HOH H 33 312 125 HOH HOH . I 7 HOH H 34 313 126 HOH HOH . I 7 HOH H 35 314 134 HOH HOH . J 7 HOH L 1 100 21 HOH HOH . J 7 HOH L 2 101 34 HOH HOH . J 7 HOH L 3 102 38 HOH HOH . J 7 HOH L 4 103 39 HOH HOH . J 7 HOH L 5 104 40 HOH HOH . J 7 HOH L 6 105 41 HOH HOH . J 7 HOH L 7 106 42 HOH HOH . J 7 HOH L 8 107 54 HOH HOH . J 7 HOH L 9 108 112 HOH HOH . J 7 HOH L 10 109 121 HOH HOH . J 7 HOH L 11 110 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 -8.164 9.989 6.447 1 51.82 ? C1 NAG 201 A 1 HETATM 2 C C2 NAG . . . F 6 -8.662 8.792 7.25 1 55.89 ? C2 NAG 201 A 1 HETATM 3 C C3 NAG . . . F 6 -8.361 7.545 6.418 1 57.03 ? C3 NAG 201 A 1 HETATM 4 C C4 NAG . . . F 6 -9.139 7.668 5.101 1 56.37 ? C4 NAG 201 A 1 HETATM 5 C C5 NAG . . . F 6 -8.682 8.941 4.37 1 54.77 ? C5 NAG 201 A 1 HETATM 6 C C6 NAG . . . F 6 -9.381 9.196 3.033 1 53.1 ? C6 NAG 201 A 1 HETATM 7 C C7 NAG . . . F 6 -8.546 9.223 9.674 1 60.74 ? C7 NAG 201 A 1 HETATM 8 C C8 NAG . . . F 6 -7.617 10.075 10.525 1 62.03 ? C8 NAG 201 A 1 HETATM 9 N N2 NAG . . . F 6 -8.003 8.734 8.543 1 58.31 ? N2 NAG 201 A 1 HETATM 10 O O3 NAG . . . F 6 -8.712 6.37 7.134 1 56.68 ? O3 NAG 201 A 1 HETATM 11 O O4 NAG . . . F 6 -8.95 6.52 4.297 1 57.88 ? O4 NAG 201 A 1 HETATM 12 O O5 NAG . . . F 6 -8.883 10.078 5.226 1 53.03 ? O5 NAG 201 A 1 HETATM 13 O O6 NAG . . . F 6 -10.708 8.694 3.045 1 54.39 ? O6 NAG 201 A 1 HETATM 14 O O7 NAG . . . F 6 -9.714 9.002 10.056 1 56.32 ? O7 NAG 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 460 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #