data_2OL4 # _model_server_result.job_id cZmb6dHxlgh2CJutjx-0Jg _model_server_result.datetime_utc '2024-12-27 19:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ol4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":450}' # _entry.id 2OL4 # _exptl.entry_id 2OL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OL4 _cell.length_a 131.445 _cell.length_b 131.445 _cell.length_c 82.868 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.445 131.445 41.434 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 282 n n PA O2A NAD sing 283 n n PA O5B NAD sing 284 n n PA O3 NAD sing 285 n n O2A HOA2 NAD sing 286 n n O5B C5B NAD sing 287 n n C5B C4B NAD sing 288 n n C5B H51A NAD sing 289 n n C5B H52A NAD sing 290 n n C4B O4B NAD sing 291 n n C4B C3B NAD sing 292 n n C4B H4B NAD sing 293 n n O4B C1B NAD sing 294 n n C3B O3B NAD sing 295 n n C3B C2B NAD sing 296 n n C3B H3B NAD sing 297 n n O3B HO3A NAD sing 298 n n C2B O2B NAD sing 299 n n C2B C1B NAD sing 300 n n C2B H2B NAD sing 301 n n O2B HO2A NAD sing 302 n n C1B N9A NAD sing 303 n n C1B H1B NAD sing 304 n n N9A C8A NAD sing 305 n y N9A C4A NAD sing 306 n y C8A N7A NAD doub 307 n y C8A H8A NAD sing 308 n n N7A C5A NAD sing 309 n y C5A C6A NAD sing 310 n y C5A C4A NAD doub 311 n y C6A N6A NAD sing 312 n n C6A N1A NAD doub 313 n y N6A H61A NAD sing 314 n n N6A H62A NAD sing 315 n n N1A C2A NAD sing 316 n y C2A N3A NAD doub 317 n y C2A H2A NAD sing 318 n n N3A C4A NAD sing 319 n y O3 PN NAD sing 320 n n PN O1N NAD doub 321 n n PN O2N NAD sing 322 n n PN O5D NAD sing 323 n n O5D C5D NAD sing 324 n n C5D C4D NAD sing 325 n n C5D H51N NAD sing 326 n n C5D H52N NAD sing 327 n n C4D O4D NAD sing 328 n n C4D C3D NAD sing 329 n n C4D H4D NAD sing 330 n n O4D C1D NAD sing 331 n n C3D O3D NAD sing 332 n n C3D C2D NAD sing 333 n n C3D H3D NAD sing 334 n n O3D HO3N NAD sing 335 n n C2D O2D NAD sing 336 n n C2D C1D NAD sing 337 n n C2D H2D NAD sing 338 n n O2D HO2N NAD sing 339 n n C1D N1N NAD sing 340 n n C1D H1D NAD sing 341 n n N1N C2N NAD sing 342 n y N1N C6N NAD doub 343 n y C2N C3N NAD doub 344 n y C2N H2N NAD sing 345 n n C3N C7N NAD sing 346 n n C3N C4N NAD sing 347 n y C7N O7N NAD doub 348 n n C7N N7N NAD sing 349 n n N7N H71N NAD sing 350 n n N7N H72N NAD sing 351 n n C4N C5N NAD doub 352 n y C4N H4N NAD sing 353 n n C5N C6N NAD sing 354 n y C5N H5N NAD sing 355 n n C6N H6N NAD sing 356 n n # _atom_sites.entry_id 2OL4 _atom_sites.fract_transf_matrix[1][1] 0.007608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 450 450 NAD NAD . D 3 JPN A 1 700 700 JPN JPN . E 2 NAD B 1 451 451 NAD NAD . F 3 JPN B 1 701 701 JPN JPN . G 4 HOH A 1 504 504 HOH HOH . G 4 HOH A 2 506 506 HOH HOH . G 4 HOH A 3 508 508 HOH HOH . G 4 HOH A 4 509 509 HOH HOH . G 4 HOH A 5 511 511 HOH HOH . G 4 HOH A 6 515 515 HOH HOH . G 4 HOH A 7 517 517 HOH HOH . G 4 HOH A 8 518 518 HOH HOH . G 4 HOH A 9 520 520 HOH HOH . G 4 HOH A 10 521 521 HOH HOH . G 4 HOH A 11 523 523 HOH HOH . G 4 HOH A 12 524 524 HOH HOH . G 4 HOH A 13 525 525 HOH HOH . G 4 HOH A 14 526 526 HOH HOH . G 4 HOH A 15 527 527 HOH HOH . G 4 HOH A 16 528 528 HOH HOH . G 4 HOH A 17 531 531 HOH HOH . G 4 HOH A 18 536 536 HOH HOH . G 4 HOH A 19 540 540 HOH HOH . G 4 HOH A 20 542 542 HOH HOH . G 4 HOH A 21 543 543 HOH HOH . G 4 HOH A 22 544 544 HOH HOH . G 4 HOH A 23 545 545 HOH HOH . G 4 HOH A 24 549 549 HOH HOH . G 4 HOH A 25 552 552 HOH HOH . G 4 HOH A 26 562 562 HOH HOH . G 4 HOH A 27 563 563 HOH HOH . G 4 HOH A 28 575 575 HOH HOH . G 4 HOH A 29 585 585 HOH HOH . G 4 HOH A 30 586 586 HOH HOH . G 4 HOH A 31 598 598 HOH HOH . G 4 HOH A 32 599 599 HOH HOH . G 4 HOH A 33 600 600 HOH HOH . G 4 HOH A 34 601 601 HOH HOH . G 4 HOH A 35 602 602 HOH HOH . G 4 HOH A 36 603 603 HOH HOH . G 4 HOH A 37 604 604 HOH HOH . G 4 HOH A 38 605 605 HOH HOH . G 4 HOH A 39 622 622 HOH HOH . G 4 HOH A 40 623 623 HOH HOH . G 4 HOH A 41 624 624 HOH HOH . G 4 HOH A 42 625 625 HOH HOH . G 4 HOH A 43 626 626 HOH HOH . G 4 HOH A 44 627 627 HOH HOH . G 4 HOH A 45 628 628 HOH HOH . G 4 HOH A 46 629 629 HOH HOH . G 4 HOH A 47 630 630 HOH HOH . G 4 HOH A 48 631 631 HOH HOH . G 4 HOH A 49 632 632 HOH HOH . G 4 HOH A 50 633 633 HOH HOH . G 4 HOH A 51 634 634 HOH HOH . G 4 HOH A 52 636 636 HOH HOH . G 4 HOH A 53 637 637 HOH HOH . G 4 HOH A 54 638 638 HOH HOH . G 4 HOH A 55 639 639 HOH HOH . G 4 HOH A 56 640 640 HOH HOH . G 4 HOH A 57 641 641 HOH HOH . G 4 HOH A 58 653 653 HOH HOH . H 4 HOH B 1 501 501 HOH HOH . H 4 HOH B 2 502 502 HOH HOH . H 4 HOH B 3 503 503 HOH HOH . H 4 HOH B 4 505 505 HOH HOH . H 4 HOH B 5 507 507 HOH HOH . H 4 HOH B 6 510 510 HOH HOH . H 4 HOH B 7 512 512 HOH HOH . H 4 HOH B 8 513 513 HOH HOH . H 4 HOH B 9 514 514 HOH HOH . H 4 HOH B 10 516 516 HOH HOH . H 4 HOH B 11 519 519 HOH HOH . H 4 HOH B 12 522 522 HOH HOH . H 4 HOH B 13 529 529 HOH HOH . H 4 HOH B 14 530 530 HOH HOH . H 4 HOH B 15 532 532 HOH HOH . H 4 HOH B 16 533 533 HOH HOH . H 4 HOH B 17 539 539 HOH HOH . H 4 HOH B 18 541 541 HOH HOH . H 4 HOH B 19 546 546 HOH HOH . H 4 HOH B 20 548 548 HOH HOH . H 4 HOH B 21 551 551 HOH HOH . H 4 HOH B 22 553 553 HOH HOH . H 4 HOH B 23 554 554 HOH HOH . H 4 HOH B 24 556 556 HOH HOH . H 4 HOH B 25 557 557 HOH HOH . H 4 HOH B 26 558 558 HOH HOH . H 4 HOH B 27 559 559 HOH HOH . H 4 HOH B 28 560 560 HOH HOH . H 4 HOH B 29 561 561 HOH HOH . H 4 HOH B 30 565 565 HOH HOH . H 4 HOH B 31 567 567 HOH HOH . H 4 HOH B 32 578 578 HOH HOH . H 4 HOH B 33 579 579 HOH HOH . H 4 HOH B 34 589 589 HOH HOH . H 4 HOH B 35 590 590 HOH HOH . H 4 HOH B 36 594 594 HOH HOH . H 4 HOH B 37 606 606 HOH HOH . H 4 HOH B 38 607 607 HOH HOH . H 4 HOH B 39 608 608 HOH HOH . H 4 HOH B 40 609 609 HOH HOH . H 4 HOH B 41 610 610 HOH HOH . H 4 HOH B 42 611 611 HOH HOH . H 4 HOH B 43 612 612 HOH HOH . H 4 HOH B 44 613 613 HOH HOH . H 4 HOH B 45 614 614 HOH HOH . H 4 HOH B 46 615 615 HOH HOH . H 4 HOH B 47 616 616 HOH HOH . H 4 HOH B 48 617 617 HOH HOH . H 4 HOH B 49 618 618 HOH HOH . H 4 HOH B 50 619 619 HOH HOH . H 4 HOH B 51 620 620 HOH HOH . H 4 HOH B 52 621 621 HOH HOH . H 4 HOH B 53 635 635 HOH HOH . H 4 HOH B 54 642 642 HOH HOH . H 4 HOH B 55 643 643 HOH HOH . H 4 HOH B 56 644 644 HOH HOH . H 4 HOH B 57 645 645 HOH HOH . H 4 HOH B 58 646 646 HOH HOH . H 4 HOH B 59 647 647 HOH HOH . H 4 HOH B 60 648 648 HOH HOH . H 4 HOH B 61 649 649 HOH HOH . H 4 HOH B 62 650 650 HOH HOH . H 4 HOH B 63 651 651 HOH HOH . H 4 HOH B 64 652 652 HOH HOH . H 4 HOH B 65 654 654 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 50.632 88.609 40.636 0.5 47.82 ? PA NAD 450 A 1 HETATM 2 O O1A NAD . . . C 2 52.112 88.314 40.694 0.5 48.29 ? O1A NAD 450 A 1 HETATM 3 O O2A NAD . . . C 2 49.839 88.769 41.912 0.5 44.67 ? O2A NAD 450 A 1 HETATM 4 O O5B NAD . . . C 2 49.892 87.502 39.725 0.5 44.91 ? O5B NAD 450 A 1 HETATM 5 C C5B NAD . . . C 2 50.579 86.767 38.711 0.5 43.07 ? C5B NAD 450 A 1 HETATM 6 C C4B NAD . . . C 2 50.908 85.395 39.275 0.5 41.95 ? C4B NAD 450 A 1 HETATM 7 O O4B NAD . . . C 2 50.905 84.364 38.278 0.5 41.52 ? O4B NAD 450 A 1 HETATM 8 C C3B NAD . . . C 2 52.301 85.41 39.878 0.5 43.18 ? C3B NAD 450 A 1 HETATM 9 O O3B NAD . . . C 2 52.195 85.429 41.302 0.5 47.27 ? O3B NAD 450 A 1 HETATM 10 C C2B NAD . . . C 2 52.963 84.129 39.41 0.5 42.88 ? C2B NAD 450 A 1 HETATM 11 O O2B NAD . . . C 2 53.427 83.368 40.528 0.5 42.77 ? O2B NAD 450 A 1 HETATM 12 C C1B NAD . . . C 2 51.874 83.377 38.659 0.5 40.77 ? C1B NAD 450 A 1 HETATM 13 N N9A NAD . . . C 2 52.453 82.623 37.515 0.5 41.87 ? N9A NAD 450 A 1 HETATM 14 C C8A NAD . . . C 2 53.381 83.033 36.609 0.5 41.45 ? C8A NAD 450 A 1 HETATM 15 N N7A NAD . . . C 2 53.694 82.055 35.692 0.5 39.17 ? N7A NAD 450 A 1 HETATM 16 C C5A NAD . . . C 2 52.953 80.974 36.008 0.5 37.88 ? C5A NAD 450 A 1 HETATM 17 C C6A NAD . . . C 2 52.73 79.594 35.53 0.5 35.06 ? C6A NAD 450 A 1 HETATM 18 N N6A NAD . . . C 2 53.314 79.129 34.43 0.5 36.75 ? N6A NAD 450 A 1 HETATM 19 N N1A NAD . . . C 2 51.905 78.843 36.265 0.5 32.38 ? N1A NAD 450 A 1 HETATM 20 C C2A NAD . . . C 2 51.269 79.284 37.282 0.5 34 ? C2A NAD 450 A 1 HETATM 21 N N3A NAD . . . C 2 51.331 80.474 37.737 0.5 36.58 ? N3A NAD 450 A 1 HETATM 22 C C4A NAD . . . C 2 52.187 81.371 37.167 0.5 39 ? C4A NAD 450 A 1 HETATM 23 O O3 NAD . . . C 2 50.43 89.939 39.756 0.5 45.44 ? O3 NAD 450 A 1 HETATM 24 P PN NAD . . . C 2 48.945 90.4 39.346 0.5 39.62 ? PN NAD 450 A 1 HETATM 25 O O1N NAD . . . C 2 48.036 90.151 40.526 0.5 31.76 ? O1N NAD 450 A 1 HETATM 26 O O2N NAD . . . C 2 49.056 91.768 38.719 0.5 37.83 ? O2N NAD 450 A 1 HETATM 27 O O5D NAD . . . C 2 48.535 89.351 38.194 0.5 38.79 ? O5D NAD 450 A 1 HETATM 28 C C5D NAD . . . C 2 47.282 88.668 38.25 0.5 35.17 ? C5D NAD 450 A 1 HETATM 29 C C4D NAD . . . C 2 46.492 88.933 36.971 0.5 34.55 ? C4D NAD 450 A 1 HETATM 30 O O4D NAD . . . C 2 46.021 90.288 36.891 0.5 34.82 ? O4D NAD 450 A 1 HETATM 31 C C3D NAD . . . C 2 47.358 88.711 35.745 0.5 34.8 ? C3D NAD 450 A 1 HETATM 32 O O3D NAD . . . C 2 46.665 87.812 34.871 0.5 25.96 ? O3D NAD 450 A 1 HETATM 33 C C2D NAD . . . C 2 47.51 90.089 35.125 0.5 30 ? C2D NAD 450 A 1 HETATM 34 O O2D NAD . . . C 2 47.577 90.009 33.707 0.5 30.93 ? O2D NAD 450 A 1 HETATM 35 C C1D NAD . . . C 2 46.236 90.781 35.561 0.5 32.38 ? C1D NAD 450 A 1 HETATM 36 N N1N NAD . . . C 2 46.272 92.252 35.526 0.5 33.44 ? N1N NAD 450 A 1 HETATM 37 C C2N NAD . . . C 2 47.082 92.942 36.343 0.5 34.46 ? C2N NAD 450 A 1 HETATM 38 C C3N NAD . . . C 2 47.099 94.338 36.332 0.5 36.8 ? C3N NAD 450 A 1 HETATM 39 C C7N NAD . . . C 2 47.999 95.109 37.264 0.5 37.31 ? C7N NAD 450 A 1 HETATM 40 O O7N NAD . . . C 2 48.181 96.412 37.089 0.5 36.65 ? O7N NAD 450 A 1 HETATM 41 N N7N NAD . . . C 2 48.577 94.539 38.228 0.5 38.67 ? N7N NAD 450 A 1 HETATM 42 C C4N NAD . . . C 2 46.265 95.017 35.449 0.5 30.85 ? C4N NAD 450 A 1 HETATM 43 C C5N NAD . . . C 2 45.443 94.277 34.611 0.5 27.93 ? C5N NAD 450 A 1 HETATM 44 C C6N NAD . . . C 2 45.463 92.889 34.671 0.5 26.45 ? C6N NAD 450 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #