data_2OLM # _model_server_result.job_id '_t6M2ItCGVrV6N90wyA4Fw' _model_server_result.datetime_utc '2025-04-20 10:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2olm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":203}' # _entry.id 2OLM # _exptl.entry_id 2OLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OLM _cell.length_a 57.883 _cell.length_b 57.883 _cell.length_c 83.696 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 41.848 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 28 A CYS 29 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A SG CYS 31 A CYS 32 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 48 A CYS 49 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A SG CYS 51 A CYS 52 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2OLM _atom_sites.fract_transf_matrix[1][1] 0.017276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 201 ZN ZN . C 3 SO4 A 1 2001 2001 SO4 SO4 . D 3 SO4 A 1 2002 2002 SO4 SO4 . E 4 UNL A 1 202 202 UNL UNL . F 5 UNX A 1 1001 1001 UNX UNX . G 5 UNX A 1 1002 1002 UNX UNX . H 5 UNX A 1 1003 1003 UNX UNX . I 5 UNX A 1 1004 1004 UNX UNX . J 5 UNX A 1 1005 1005 UNX UNX . K 5 UNX A 1 1006 1006 UNX UNX . L 5 UNX A 1 1007 1007 UNX UNX . M 5 UNX A 1 1008 1008 UNX UNX . N 5 UNX A 1 1009 1009 UNX UNX . O 6 GOL A 1 203 203 GOL GOL . P 7 HOH A 1 2003 1 HOH HOH . P 7 HOH A 2 2004 2 HOH HOH . P 7 HOH A 3 2005 3 HOH HOH . P 7 HOH A 4 2006 4 HOH HOH . P 7 HOH A 5 2007 5 HOH HOH . P 7 HOH A 6 2008 6 HOH HOH . P 7 HOH A 7 2009 7 HOH HOH . P 7 HOH A 8 2010 8 HOH HOH . P 7 HOH A 9 2011 9 HOH HOH . P 7 HOH A 10 2012 10 HOH HOH . P 7 HOH A 11 2013 11 HOH HOH . P 7 HOH A 12 2014 12 HOH HOH . P 7 HOH A 13 2015 13 HOH HOH . P 7 HOH A 14 2016 14 HOH HOH . P 7 HOH A 15 2017 15 HOH HOH . P 7 HOH A 16 2018 16 HOH HOH . P 7 HOH A 17 2019 17 HOH HOH . P 7 HOH A 18 2020 18 HOH HOH . P 7 HOH A 19 2021 20 HOH HOH . P 7 HOH A 20 2022 21 HOH HOH . P 7 HOH A 21 2023 22 HOH HOH . P 7 HOH A 22 2024 23 HOH HOH . P 7 HOH A 23 2025 24 HOH HOH . P 7 HOH A 24 2026 25 HOH HOH . P 7 HOH A 25 2027 26 HOH HOH . P 7 HOH A 26 2028 27 HOH HOH . P 7 HOH A 27 2029 28 HOH HOH . P 7 HOH A 28 2030 29 HOH HOH . P 7 HOH A 29 2031 30 HOH HOH . P 7 HOH A 30 2032 31 HOH HOH . P 7 HOH A 31 2033 32 HOH HOH . P 7 HOH A 32 2034 33 HOH HOH . P 7 HOH A 33 2035 34 HOH HOH . P 7 HOH A 34 2036 35 HOH HOH . P 7 HOH A 35 2037 36 HOH HOH . P 7 HOH A 36 2038 37 HOH HOH . P 7 HOH A 37 2039 38 HOH HOH . P 7 HOH A 38 2040 39 HOH HOH . P 7 HOH A 39 2041 40 HOH HOH . P 7 HOH A 40 2042 41 HOH HOH . P 7 HOH A 41 2043 42 HOH HOH . P 7 HOH A 42 2044 43 HOH HOH . P 7 HOH A 43 2045 44 HOH HOH . P 7 HOH A 44 2046 45 HOH HOH . P 7 HOH A 45 2047 46 HOH HOH . P 7 HOH A 46 2048 47 HOH HOH . P 7 HOH A 47 2049 48 HOH HOH . P 7 HOH A 48 2050 49 HOH HOH . P 7 HOH A 49 2051 50 HOH HOH . P 7 HOH A 50 2052 51 HOH HOH . P 7 HOH A 51 2053 52 HOH HOH . P 7 HOH A 52 2054 53 HOH HOH . P 7 HOH A 53 2055 54 HOH HOH . P 7 HOH A 54 2056 55 HOH HOH . P 7 HOH A 55 2057 56 HOH HOH . P 7 HOH A 56 2058 57 HOH HOH . P 7 HOH A 57 2059 58 HOH HOH . P 7 HOH A 58 2060 59 HOH HOH . P 7 HOH A 59 2061 61 HOH HOH . P 7 HOH A 60 2062 62 HOH HOH . P 7 HOH A 61 2063 63 HOH HOH . P 7 HOH A 62 2064 64 HOH HOH . P 7 HOH A 63 2065 65 HOH HOH . P 7 HOH A 64 2066 66 HOH HOH . P 7 HOH A 65 2067 67 HOH HOH . P 7 HOH A 66 2068 68 HOH HOH . P 7 HOH A 67 2069 69 HOH HOH . P 7 HOH A 68 2070 70 HOH HOH . P 7 HOH A 69 2071 71 HOH HOH . P 7 HOH A 70 2072 72 HOH HOH . P 7 HOH A 71 2073 73 HOH HOH . P 7 HOH A 72 2074 74 HOH HOH . P 7 HOH A 73 2075 75 HOH HOH . P 7 HOH A 74 2076 76 HOH HOH . P 7 HOH A 75 2077 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 6 30.475 13.993 20.594 1 20.67 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . O 6 29.762 13.951 19.389 1 15.96 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . O 6 31.694 13.116 20.554 1 20.68 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . O 6 31.495 11.875 19.917 1 26.45 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . O 6 32.157 12.889 21.992 1 18.44 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . O 6 33.466 12.462 21.979 1 21.48 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #