data_2OMB # _model_server_result.job_id PTfZhIM9YYl-Ib8amCXPJg _model_server_result.datetime_utc '2024-11-04 22:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2omb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":2002}' # _entry.id 2OMB # _exptl.entry_id 2OMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OMB _cell.length_a 153.52 _cell.length_b 153.52 _cell.length_c 93.95 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,P,Q 1 1 C,D,K,L,M,N,O,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 A SG CYS 198 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 216 A CYS 216 1_555 B SG CYS 216 B CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 139 B CYS 139 1_555 B SG CYS 198 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 C SG CYS 22 C CYS 22 1_555 C SG CYS 90 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 C SG CYS 139 C CYS 139 1_555 C SG CYS 198 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 216 C CYS 216 1_555 D SG CYS 216 D CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 D SG CYS 22 D CYS 22 1_555 D SG CYS 90 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 D SG CYS 139 D CYS 139 1_555 D SG CYS 198 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C PCA 1 B PCA 1 1_555 B N SER 2 B SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 C C PCA 1 C PCA 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 D C PCA 1 D PCA 1 1_555 D N SER 2 D SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPH doub 173 n y C1 C6 IPH sing 174 n y C1 O1 IPH sing 175 n n C2 C3 IPH sing 176 n y C2 H2 IPH sing 177 n n C3 C4 IPH doub 178 n y C3 H3 IPH sing 179 n n C4 C5 IPH sing 180 n y C4 H4 IPH sing 181 n n C5 C6 IPH doub 182 n y C5 H5 IPH sing 183 n n C6 H6 IPH sing 184 n n O1 HO1 IPH sing 185 n n # _atom_sites.entry_id 2OMB _atom_sites.fract_transf_matrix[1][1] 0.006514 _atom_sites.fract_transf_matrix[1][2] 0.003761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 1001 1001 SO4 SO4 . F 2 SO4 A 1 1007 1007 SO4 SO4 . G 2 SO4 A 1 1008 1008 SO4 SO4 . H 3 IPH A 1 2001 2001 IPH IPH . I 2 SO4 B 1 1002 1002 SO4 SO4 . J 2 SO4 B 1 1003 1003 SO4 SO4 . K 2 SO4 C 1 1006 1006 SO4 SO4 . L 2 SO4 C 1 1009 1009 SO4 SO4 . M 2 SO4 D 1 1004 1004 SO4 SO4 . N 2 SO4 D 1 1005 1005 SO4 SO4 . O 3 IPH D 1 2002 2002 IPH IPH . P 4 HOH A 1 2002 4 HOH HOH . P 4 HOH A 2 2003 7 HOH HOH . P 4 HOH A 3 2004 8 HOH HOH . P 4 HOH A 4 2005 9 HOH HOH . P 4 HOH A 5 2006 10 HOH HOH . P 4 HOH A 6 2007 11 HOH HOH . P 4 HOH A 7 2008 12 HOH HOH . P 4 HOH A 8 2009 16 HOH HOH . Q 4 HOH B 1 1004 13 HOH HOH . R 4 HOH C 1 1010 1 HOH HOH . R 4 HOH C 2 1011 2 HOH HOH . R 4 HOH C 3 1012 15 HOH HOH . S 4 HOH D 1 2003 3 HOH HOH . S 4 HOH D 2 2004 5 HOH HOH . S 4 HOH D 3 2005 6 HOH HOH . S 4 HOH D 4 2006 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . O 3 78.885 -23.628 11.249 1 50.06 ? C1 IPH 2002 D 1 HETATM 2 C C2 IPH . . . O 3 80.054 -22.882 10.833 1 45.97 ? C2 IPH 2002 D 1 HETATM 3 C C3 IPH . . . O 3 81.322 -23.579 10.941 1 43.61 ? C3 IPH 2002 D 1 HETATM 4 C C4 IPH . . . O 3 81.371 -24.922 11.431 1 44.58 ? C4 IPH 2002 D 1 HETATM 5 C C5 IPH . . . O 3 80.196 -25.633 11.833 1 46.01 ? C5 IPH 2002 D 1 HETATM 6 C C6 IPH . . . O 3 78.888 -24.974 11.747 1 48.32 ? C6 IPH 2002 D 1 HETATM 7 O O1 IPH . . . O 3 77.656 -23.007 11.162 1 47.87 ? O1 IPH 2002 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #