data_2OMG
#
_model_server_result.job_id            cXO3LOsALBEqw5GSyWc_eg 
_model_server_result.datetime_utc      '2024-11-26 07:49:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2omg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":602}' 
#
_entry.id    2OMG 
#
_exptl.entry_id    2OMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.055 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UREA 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OMG 
_cell.length_a            61.66 
_cell.length_b            61.66 
_cell.length_c            85.54 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 N N N 
? 5 Q N N 
? 5 R N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 E SG CYS 6 E CYS 6 1_555 E SG CYS 11 E CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
disulf ? disulf8 E SG CYS 7 E CYS 7 1_555 F SG CYS 7 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf9 E SG CYS 20 E CYS 20 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
covale ? covale1 A N GLY 1 A GLY 1 1_555 K C ARF . A ARF 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.737 ? 
covale ? covale2 B N PHE 1 B PHE 1 1_555 O C ARF . B ARF 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? 
covale ? covale3 D N PHE 1 D PHE 1 1_555 S C ARF . D ARF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale4 E N GLY 1 E GLY 1 1_555 V C ARF . E ARF 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
covale ? covale5 F N PHE 1 F PHE 1 1_555 W C ARF . F ARF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.137 ? 
covale ? covale6 F N PHE 1 F PHE 1 1_555 W N ARF . F ARF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc1 A O ASN 18 A ASN 18 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A O CYS 20 A CYS 20 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc3 G NA NA . A NA 401 1_555 X O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc4 G NA NA . A NA 401 1_555 X O HOH . A HOH 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc5 G NA NA . A NA 401 1_555 X O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc6 G NA NA . A NA 401 1_555 X O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc7 B NE2 HIS 10 B HIS 10 1_555 L ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc8 L ZN ZN . B ZN 201 1_555 M CL CL . B CL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc9 L ZN ZN . B ZN 201 1_555 D NE2 HIS 10 D HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc10 L ZN ZN . B ZN 201 1_555 F NE2 HIS 10 F HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
#
_chem_comp.formula           'C H4 N2 O' 
_chem_comp.formula_weight    60.055 
_chem_comp.id                URE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UREA 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O URE doub 317 n n 
C N1 URE sing 318 n n 
C N2 URE sing 319 n n 
N1 HN11 URE sing 320 n n 
N1 HN12 URE sing 321 n n 
N2 HN21 URE sing 322 n n 
N2 HN22 URE sing 323 n n 
#
_atom_sites.entry_id                     2OMG 
_atom_sites.fract_transf_matrix[1][1]    0.016218 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016218 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01169 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NA A 1 401 1 NA NA . 
H 4 CRS A 1 502 2 CRS CRS . 
I 5 URE A 1 602 2 URE URE . 
J 5 URE A 1 605 5 URE URE . 
K 6 ARF A 1 704 4 ARF ICY . 
L 7 ZN B 1 201 1 ZN ZN . 
M 8 CL B 1 301 1 CL CL . 
N 5 URE B 1 604 4 URE URE . 
O 6 ARF B 1 703 3 ARF ICY . 
P 4 CRS C 1 501 1 CRS CRS . 
Q 5 URE C 1 603 3 URE URE . 
R 5 URE D 1 606 6 URE URE . 
S 6 ARF D 1 701 1 ARF ICY . 
T 4 CRS E 1 503 3 CRS CRS . 
U 5 URE E 1 601 1 URE URE . 
V 6 ARF E 1 705 5 ARF ICY . 
W 6 ARF F 1 702 2 ARF ICY . 
X 9 HOH A 1 705 2 HOH HOH . 
X 9 HOH A 2 706 11 HOH HOH . 
X 9 HOH A 3 707 14 HOH HOH . 
X 9 HOH A 4 708 23 HOH HOH . 
X 9 HOH A 5 709 24 HOH HOH . 
X 9 HOH A 6 710 27 HOH HOH . 
X 9 HOH A 7 711 31 HOH HOH . 
X 9 HOH A 8 712 35 HOH HOH . 
X 9 HOH A 9 713 36 HOH HOH . 
X 9 HOH A 10 714 44 HOH HOH . 
X 9 HOH A 11 715 45 HOH HOH . 
X 9 HOH A 12 716 56 HOH HOH . 
X 9 HOH A 13 717 57 HOH HOH . 
X 9 HOH A 14 718 65 HOH HOH . 
X 9 HOH A 15 719 79 HOH HOH . 
X 9 HOH A 16 720 84 HOH HOH . 
X 9 HOH A 17 721 85 HOH HOH . 
X 9 HOH A 18 722 86 HOH HOH . 
X 9 HOH A 19 723 90 HOH HOH . 
X 9 HOH A 20 724 91 HOH HOH . 
X 9 HOH A 21 725 92 HOH HOH . 
X 9 HOH A 22 726 93 HOH HOH . 
Y 9 HOH B 1 704 1 HOH HOH . 
Y 9 HOH B 2 705 5 HOH HOH . 
Y 9 HOH B 3 706 9 HOH HOH . 
Y 9 HOH B 4 707 13 HOH HOH . 
Y 9 HOH B 5 708 19 HOH HOH . 
Y 9 HOH B 6 709 28 HOH HOH . 
Y 9 HOH B 7 710 37 HOH HOH . 
Y 9 HOH B 8 711 39 HOH HOH . 
Y 9 HOH B 9 712 40 HOH HOH . 
Y 9 HOH B 10 713 41 HOH HOH . 
Y 9 HOH B 11 714 52 HOH HOH . 
Y 9 HOH B 12 715 54 HOH HOH . 
Y 9 HOH B 13 716 64 HOH HOH . 
Y 9 HOH B 14 717 69 HOH HOH . 
Y 9 HOH B 15 718 74 HOH HOH . 
Y 9 HOH B 16 719 82 HOH HOH . 
Y 9 HOH B 17 720 87 HOH HOH . 
Y 9 HOH B 18 721 98 HOH HOH . 
Z 9 HOH C 1 604 16 HOH HOH . 
Z 9 HOH C 2 605 17 HOH HOH . 
Z 9 HOH C 3 606 22 HOH HOH . 
Z 9 HOH C 4 607 29 HOH HOH . 
Z 9 HOH C 5 608 48 HOH HOH . 
Z 9 HOH C 6 609 58 HOH HOH . 
Z 9 HOH C 7 610 59 HOH HOH . 
Z 9 HOH C 8 611 63 HOH HOH . 
Z 9 HOH C 9 612 76 HOH HOH . 
Z 9 HOH C 10 613 78 HOH HOH . 
Z 9 HOH C 11 614 89 HOH HOH . 
Z 9 HOH C 12 615 97 HOH HOH . 
AA 9 HOH D 1 702 4 HOH HOH . 
AA 9 HOH D 2 703 6 HOH HOH . 
AA 9 HOH D 3 704 8 HOH HOH . 
AA 9 HOH D 4 705 10 HOH HOH . 
AA 9 HOH D 5 706 25 HOH HOH . 
AA 9 HOH D 6 707 26 HOH HOH . 
AA 9 HOH D 7 708 30 HOH HOH . 
AA 9 HOH D 8 709 33 HOH HOH . 
AA 9 HOH D 9 710 34 HOH HOH . 
AA 9 HOH D 10 711 42 HOH HOH . 
AA 9 HOH D 11 712 47 HOH HOH . 
AA 9 HOH D 12 713 49 HOH HOH . 
AA 9 HOH D 13 714 50 HOH HOH . 
AA 9 HOH D 14 715 51 HOH HOH . 
AA 9 HOH D 15 716 62 HOH HOH . 
AA 9 HOH D 16 717 67 HOH HOH . 
AA 9 HOH D 17 718 71 HOH HOH . 
AA 9 HOH D 18 719 72 HOH HOH . 
AA 9 HOH D 19 720 77 HOH HOH . 
AA 9 HOH D 20 721 81 HOH HOH . 
AA 9 HOH D 21 722 88 HOH HOH . 
AA 9 HOH D 22 723 96 HOH HOH . 
AA 9 HOH D 23 724 99 HOH HOH . 
AA 9 HOH D 24 725 101 HOH HOH . 
BA 9 HOH E 1 706 3 HOH HOH . 
BA 9 HOH E 2 707 12 HOH HOH . 
BA 9 HOH E 3 708 32 HOH HOH . 
BA 9 HOH E 4 709 43 HOH HOH . 
BA 9 HOH E 5 710 66 HOH HOH . 
BA 9 HOH E 6 711 70 HOH HOH . 
BA 9 HOH E 7 712 80 HOH HOH . 
BA 9 HOH E 8 713 83 HOH HOH . 
BA 9 HOH E 9 714 94 HOH HOH . 
CA 9 HOH F 1 703 7 HOH HOH . 
CA 9 HOH F 2 704 15 HOH HOH . 
CA 9 HOH F 3 705 18 HOH HOH . 
CA 9 HOH F 4 706 20 HOH HOH . 
CA 9 HOH F 5 707 21 HOH HOH . 
CA 9 HOH F 6 708 38 HOH HOH . 
CA 9 HOH F 7 709 46 HOH HOH . 
CA 9 HOH F 8 710 53 HOH HOH . 
CA 9 HOH F 9 711 55 HOH HOH . 
CA 9 HOH F 10 712 60 HOH HOH . 
CA 9 HOH F 11 713 61 HOH HOH . 
CA 9 HOH F 12 714 68 HOH HOH . 
CA 9 HOH F 13 715 73 HOH HOH . 
CA 9 HOH F 14 716 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C URE . . . I 5 21.014 8.414 14.111 1 44.49 ? C URE 602 A 1 
HETATM 2 O O URE . . . I 5 20.616 7.272 13.959 1 44.84 ? O URE 602 A 1 
HETATM 3 N N1 URE . . . I 5 21.074 8.962 15.316 1 43.68 ? N1 URE 602 A 1 
HETATM 4 N N2 URE . . . I 5 21.398 9.103 13.046 1 45.38 ? N2 URE 602 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           4 
#