data_2OMH
#
_model_server_result.job_id            Zrgzo5zcrOdnSC5zTt9_yQ 
_model_server_result.datetime_utc      '2024-11-22 15:24:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2omh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    2OMH 
#
_exptl.entry_id    2OMH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.055 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UREA 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OMH 
_cell.length_a            61.36 
_cell.length_b            61.36 
_cell.length_c            85.6 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OMH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dodecameric 12 author_and_software_defined_assembly 1 
PQS dodecameric 12 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 42.8 
3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 M N N 
? 5 P N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 E SG CYS 6 E CYS 6 1_555 E SG CYS 11 E CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf8 E SG CYS 7 E CYS 7 1_555 F SG CYS 7 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf9 E SG CYS 20 E CYS 20 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 D N PHE 1 D PHE 1 1_555 N C ARF . D ARF 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
covale ? covale2 F N PHE 1 F PHE 1 1_555 R C ARF . F ARF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? 
metalc ? metalc1 A O ASN 18 A ASN 18 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc2 A O CYS 20 A CYS 20 1_555 G NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc3 G NA NA . A NA 401 1_555 S O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc4 G NA NA . A NA 401 1_555 S O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc5 G NA NA . A NA 401 1_555 S O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc6 G NA NA . A NA 401 1_555 S O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc7 B NE2 HIS 10 B HIS 10 1_555 J ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc8 J ZN ZN . B ZN 201 1_555 K CL CL . B CL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc9 J ZN ZN . B ZN 201 1_555 D NE2 HIS 10 D HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc10 J ZN ZN . B ZN 201 1_555 F NE2 HIS 10 F HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C H4 N2 O' 
_chem_comp.formula_weight    60.055 
_chem_comp.id                URE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UREA 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O URE doub 315 n n 
C N1 URE sing 316 n n 
C N2 URE sing 317 n n 
N1 HN11 URE sing 318 n n 
N1 HN12 URE sing 319 n n 
N2 HN21 URE sing 320 n n 
N2 HN22 URE sing 321 n n 
#
_atom_sites.entry_id                     2OMH 
_atom_sites.fract_transf_matrix[1][1]    0.016297 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016297 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011682 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NA A 1 401 1 NA NA . 
H 4 RCO A 1 502 2 RCO RCO . 
I 5 URE A 1 601 1 URE URE . 
J 6 ZN B 1 201 1 ZN ZN . 
K 7 CL B 1 301 1 CL CL . 
L 4 RCO C 1 503 3 RCO RCO . 
M 5 URE C 1 603 3 URE URE . 
N 8 ARF D 1 702 2 ARF ICY . 
O 4 RCO E 1 501 1 RCO RCO . 
P 5 URE E 1 604 4 URE URE . 
Q 5 URE F 1 602 2 URE URE . 
R 8 ARF F 1 701 1 ARF ICY . 
S 9 HOH A 1 602 4 HOH HOH . 
S 9 HOH A 2 603 8 HOH HOH . 
S 9 HOH A 3 604 18 HOH HOH . 
S 9 HOH A 4 605 19 HOH HOH . 
S 9 HOH A 5 606 26 HOH HOH . 
S 9 HOH A 6 607 36 HOH HOH . 
S 9 HOH A 7 608 37 HOH HOH . 
S 9 HOH A 8 609 38 HOH HOH . 
S 9 HOH A 9 610 43 HOH HOH . 
S 9 HOH A 10 611 46 HOH HOH . 
S 9 HOH A 11 612 47 HOH HOH . 
S 9 HOH A 12 613 51 HOH HOH . 
S 9 HOH A 13 614 52 HOH HOH . 
S 9 HOH A 14 615 53 HOH HOH . 
S 9 HOH A 15 616 58 HOH HOH . 
S 9 HOH A 16 617 67 HOH HOH . 
S 9 HOH A 17 618 68 HOH HOH . 
S 9 HOH A 18 619 101 HOH HOH . 
S 9 HOH A 19 620 103 HOH HOH . 
S 9 HOH A 20 621 107 HOH HOH . 
S 9 HOH A 21 622 123 HOH HOH . 
S 9 HOH A 22 623 125 HOH HOH . 
S 9 HOH A 23 624 127 HOH HOH . 
S 9 HOH A 24 625 130 HOH HOH . 
S 9 HOH A 25 626 131 HOH HOH . 
S 9 HOH A 26 627 139 HOH HOH . 
S 9 HOH A 27 628 141 HOH HOH . 
S 9 HOH A 28 629 147 HOH HOH . 
S 9 HOH A 29 630 148 HOH HOH . 
S 9 HOH A 30 631 155 HOH HOH . 
T 9 HOH B 1 302 7 HOH HOH . 
T 9 HOH B 2 303 12 HOH HOH . 
T 9 HOH B 3 304 17 HOH HOH . 
T 9 HOH B 4 305 20 HOH HOH . 
T 9 HOH B 5 306 23 HOH HOH . 
T 9 HOH B 6 307 24 HOH HOH . 
T 9 HOH B 7 308 25 HOH HOH . 
T 9 HOH B 8 309 27 HOH HOH . 
T 9 HOH B 9 310 35 HOH HOH . 
T 9 HOH B 10 311 44 HOH HOH . 
T 9 HOH B 11 312 45 HOH HOH . 
T 9 HOH B 12 313 57 HOH HOH . 
T 9 HOH B 13 314 60 HOH HOH . 
T 9 HOH B 14 315 61 HOH HOH . 
T 9 HOH B 15 316 72 HOH HOH . 
T 9 HOH B 16 317 73 HOH HOH . 
T 9 HOH B 17 318 74 HOH HOH . 
T 9 HOH B 18 319 98 HOH HOH . 
T 9 HOH B 19 320 102 HOH HOH . 
T 9 HOH B 20 321 108 HOH HOH . 
T 9 HOH B 21 322 109 HOH HOH . 
T 9 HOH B 22 323 115 HOH HOH . 
T 9 HOH B 23 324 119 HOH HOH . 
T 9 HOH B 24 325 122 HOH HOH . 
T 9 HOH B 25 326 132 HOH HOH . 
T 9 HOH B 26 327 133 HOH HOH . 
T 9 HOH B 27 328 134 HOH HOH . 
T 9 HOH B 28 329 136 HOH HOH . 
T 9 HOH B 29 330 138 HOH HOH . 
T 9 HOH B 30 331 142 HOH HOH . 
T 9 HOH B 31 332 150 HOH HOH . 
T 9 HOH B 32 333 157 HOH HOH . 
T 9 HOH B 33 334 161 HOH HOH . 
T 9 HOH B 34 335 165 HOH HOH . 
U 9 HOH C 1 604 2 HOH HOH . 
U 9 HOH C 2 605 11 HOH HOH . 
U 9 HOH C 3 606 28 HOH HOH . 
U 9 HOH C 4 607 31 HOH HOH . 
U 9 HOH C 5 608 33 HOH HOH . 
U 9 HOH C 6 609 34 HOH HOH . 
U 9 HOH C 7 610 41 HOH HOH . 
U 9 HOH C 8 611 54 HOH HOH . 
U 9 HOH C 9 612 63 HOH HOH . 
U 9 HOH C 10 613 65 HOH HOH . 
U 9 HOH C 11 614 69 HOH HOH . 
U 9 HOH C 12 615 71 HOH HOH . 
U 9 HOH C 13 616 75 HOH HOH . 
U 9 HOH C 14 617 81 HOH HOH . 
U 9 HOH C 15 618 82 HOH HOH . 
U 9 HOH C 16 619 90 HOH HOH . 
U 9 HOH C 17 620 94 HOH HOH . 
U 9 HOH C 18 621 97 HOH HOH . 
U 9 HOH C 19 622 111 HOH HOH . 
U 9 HOH C 20 623 112 HOH HOH . 
U 9 HOH C 21 624 121 HOH HOH . 
U 9 HOH C 22 625 145 HOH HOH . 
U 9 HOH C 23 626 146 HOH HOH . 
U 9 HOH C 24 627 149 HOH HOH . 
U 9 HOH C 25 628 153 HOH HOH . 
U 9 HOH C 26 629 156 HOH HOH . 
V 9 HOH D 1 703 6 HOH HOH . 
V 9 HOH D 2 704 9 HOH HOH . 
V 9 HOH D 3 705 10 HOH HOH . 
V 9 HOH D 4 706 14 HOH HOH . 
V 9 HOH D 5 707 22 HOH HOH . 
V 9 HOH D 6 708 30 HOH HOH . 
V 9 HOH D 7 709 32 HOH HOH . 
V 9 HOH D 8 710 40 HOH HOH . 
V 9 HOH D 9 711 55 HOH HOH . 
V 9 HOH D 10 712 62 HOH HOH . 
V 9 HOH D 11 713 64 HOH HOH . 
V 9 HOH D 12 714 77 HOH HOH . 
V 9 HOH D 13 715 78 HOH HOH . 
V 9 HOH D 14 716 79 HOH HOH . 
V 9 HOH D 15 717 80 HOH HOH . 
V 9 HOH D 16 718 86 HOH HOH . 
V 9 HOH D 17 719 88 HOH HOH . 
V 9 HOH D 18 720 89 HOH HOH . 
V 9 HOH D 19 721 93 HOH HOH . 
V 9 HOH D 20 722 95 HOH HOH . 
V 9 HOH D 21 723 96 HOH HOH . 
V 9 HOH D 22 724 116 HOH HOH . 
V 9 HOH D 23 725 117 HOH HOH . 
V 9 HOH D 24 726 120 HOH HOH . 
V 9 HOH D 25 727 129 HOH HOH . 
V 9 HOH D 26 728 140 HOH HOH . 
V 9 HOH D 27 729 143 HOH HOH . 
V 9 HOH D 28 730 144 HOH HOH . 
V 9 HOH D 29 731 152 HOH HOH . 
V 9 HOH D 30 732 158 HOH HOH . 
W 9 HOH E 1 605 1 HOH HOH . 
W 9 HOH E 2 606 13 HOH HOH . 
W 9 HOH E 3 607 59 HOH HOH . 
W 9 HOH E 4 608 66 HOH HOH . 
W 9 HOH E 5 609 76 HOH HOH . 
W 9 HOH E 6 610 85 HOH HOH . 
W 9 HOH E 7 611 91 HOH HOH . 
W 9 HOH E 8 612 105 HOH HOH . 
W 9 HOH E 9 613 106 HOH HOH . 
W 9 HOH E 10 614 110 HOH HOH . 
W 9 HOH E 11 615 114 HOH HOH . 
W 9 HOH E 12 616 126 HOH HOH . 
W 9 HOH E 13 617 128 HOH HOH . 
W 9 HOH E 14 618 135 HOH HOH . 
W 9 HOH E 15 619 160 HOH HOH . 
W 9 HOH E 16 620 162 HOH HOH . 
W 9 HOH E 17 621 166 HOH HOH . 
X 9 HOH F 1 702 3 HOH HOH . 
X 9 HOH F 2 703 5 HOH HOH . 
X 9 HOH F 3 704 15 HOH HOH . 
X 9 HOH F 4 705 16 HOH HOH . 
X 9 HOH F 5 706 21 HOH HOH . 
X 9 HOH F 6 707 29 HOH HOH . 
X 9 HOH F 7 708 39 HOH HOH . 
X 9 HOH F 8 709 42 HOH HOH . 
X 9 HOH F 9 710 48 HOH HOH . 
X 9 HOH F 10 711 49 HOH HOH . 
X 9 HOH F 11 712 50 HOH HOH . 
X 9 HOH F 12 713 56 HOH HOH . 
X 9 HOH F 13 714 70 HOH HOH . 
X 9 HOH F 14 715 83 HOH HOH . 
X 9 HOH F 15 716 84 HOH HOH . 
X 9 HOH F 16 717 87 HOH HOH . 
X 9 HOH F 17 718 92 HOH HOH . 
X 9 HOH F 18 719 99 HOH HOH . 
X 9 HOH F 19 720 100 HOH HOH . 
X 9 HOH F 20 721 104 HOH HOH . 
X 9 HOH F 21 722 113 HOH HOH . 
X 9 HOH F 22 723 124 HOH HOH . 
X 9 HOH F 23 724 137 HOH HOH . 
X 9 HOH F 24 725 151 HOH HOH . 
X 9 HOH F 25 726 154 HOH HOH . 
X 9 HOH F 26 727 159 HOH HOH . 
X 9 HOH F 27 728 163 HOH HOH . 
X 9 HOH F 28 729 164 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C URE . . . I 5 -9.634 22.319 8.152 1 30.7 ? C URE 601 A 1 
HETATM 2 O O URE . . . I 5 -9.939 23.481 8.4 1 30.92 ? O URE 601 A 1 
HETATM 3 N N1 URE . . . I 5 -9.312 21.476 9.134 1 30.92 ? N1 URE 601 A 1 
HETATM 4 N N2 URE . . . I 5 -9.61 21.857 6.901 1 30.18 ? N2 URE 601 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#