data_2OMI
#
_model_server_result.job_id            gsUlM9z397BDxM8HPsM1Rw 
_model_server_result.datetime_utc      '2024-11-14 09:54:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2omi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":202}' 
#
_entry.id    2OMI 
#
_exptl.entry_id    2OMI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OMI 
_cell.length_a            60.52 
_cell.length_b            61.84 
_cell.length_c            86 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OMI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
disulf ? disulf7 E SG CYS 6 E CYS 6 1_555 E SG CYS 11 E CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf8 E SG CYS 7 E CYS 7 1_555 F SG CYS 7 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf9 E SG CYS 20 E CYS 20 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 G SG CYS 6 G CYS 6 1_555 G SG CYS 11 G CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf11 G SG CYS 7 G CYS 7 1_555 H SG CYS 7 H CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf12 G SG CYS 20 G CYS 20 1_555 H SG CYS 19 H CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 I SG CYS 6 I CYS 6 1_555 I SG CYS 11 I CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
disulf ? disulf14 I SG CYS 7 I CYS 7 1_555 J SG CYS 7 J CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf15 I SG CYS 20 I CYS 20 1_555 J SG CYS 19 J CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
disulf ? disulf16 K SG CYS 6 K CYS 6 1_555 K SG CYS 11 K CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf17 K SG CYS 7 K CYS 7 1_555 L SG CYS 7 L CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf18 K SG CYS 20 K CYS 20 1_555 L SG CYS 19 L CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 N ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc2 N ZN ZN . B ZN 202 1_555 O CL CL . B CL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc3 N ZN ZN . B ZN 202 1_555 D NE2 HIS 10 D HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc4 N ZN ZN . B ZN 202 1_555 F NE2 HIS 10 F HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc5 H NE2 HIS 10 H HIS 10 1_555 S ZN ZN . H ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc6 S ZN ZN . H ZN 201 1_555 J NE2 HIS 10 J HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc7 S ZN ZN . H ZN 201 1_555 U CL CL . J CL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc8 S ZN ZN . H ZN 201 1_555 L NE2 HIS 10 L HIS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2OMI 
_atom_sites.fract_transf_matrix[1][1]    0.016523 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016171 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 RCO A 1 301 1 RCO RCO . 
N 4 ZN B 1 202 2 ZN ZN . 
O 5 CL B 1 402 2 CL CL . 
P 3 RCO C 1 306 6 RCO RCO . 
Q 3 RCO E 1 303 3 RCO RCO . 
R 3 RCO G 1 302 2 RCO RCO . 
S 4 ZN H 1 201 1 ZN ZN . 
T 3 RCO I 1 305 5 RCO RCO . 
U 5 CL J 1 401 1 CL CL . 
V 3 RCO K 1 304 4 RCO RCO . 
W 6 HOH A 1 302 9 HOH HOH . 
W 6 HOH A 2 303 12 HOH HOH . 
W 6 HOH A 3 304 34 HOH HOH . 
W 6 HOH A 4 305 46 HOH HOH . 
W 6 HOH A 5 306 53 HOH HOH . 
W 6 HOH A 6 307 78 HOH HOH . 
W 6 HOH A 7 308 83 HOH HOH . 
W 6 HOH A 8 309 90 HOH HOH . 
W 6 HOH A 9 310 91 HOH HOH . 
X 6 HOH B 1 403 24 HOH HOH . 
X 6 HOH B 2 404 27 HOH HOH . 
X 6 HOH B 3 405 33 HOH HOH . 
X 6 HOH B 4 406 45 HOH HOH . 
X 6 HOH B 5 407 48 HOH HOH . 
X 6 HOH B 6 408 66 HOH HOH . 
X 6 HOH B 7 409 67 HOH HOH . 
X 6 HOH B 8 410 88 HOH HOH . 
X 6 HOH B 9 411 93 HOH HOH . 
X 6 HOH B 10 412 95 HOH HOH . 
X 6 HOH B 11 413 105 HOH HOH . 
Y 6 HOH C 1 307 2 HOH HOH . 
Y 6 HOH C 2 308 7 HOH HOH . 
Y 6 HOH C 3 309 23 HOH HOH . 
Y 6 HOH C 4 310 26 HOH HOH . 
Y 6 HOH C 5 311 58 HOH HOH . 
Y 6 HOH C 6 312 59 HOH HOH . 
Y 6 HOH C 7 313 71 HOH HOH . 
Y 6 HOH C 8 314 103 HOH HOH . 
Y 6 HOH C 9 315 111 HOH HOH . 
Y 6 HOH C 10 316 113 HOH HOH . 
Y 6 HOH C 11 317 114 HOH HOH . 
Z 6 HOH D 1 31 1 HOH HOH . 
Z 6 HOH D 2 32 4 HOH HOH . 
Z 6 HOH D 3 33 6 HOH HOH . 
Z 6 HOH D 4 34 21 HOH HOH . 
Z 6 HOH D 5 35 43 HOH HOH . 
Z 6 HOH D 6 36 56 HOH HOH . 
Z 6 HOH D 7 37 69 HOH HOH . 
Z 6 HOH D 8 38 86 HOH HOH . 
Z 6 HOH D 9 39 89 HOH HOH . 
Z 6 HOH D 10 40 98 HOH HOH . 
Z 6 HOH D 11 41 101 HOH HOH . 
Z 6 HOH D 12 42 112 HOH HOH . 
AA 6 HOH E 1 47 47 HOH HOH . 
AA 6 HOH E 2 54 54 HOH HOH . 
AA 6 HOH E 3 82 82 HOH HOH . 
AA 6 HOH E 4 104 104 HOH HOH . 
AA 6 HOH E 5 119 119 HOH HOH . 
BA 6 HOH F 1 31 30 HOH HOH . 
BA 6 HOH F 2 32 35 HOH HOH . 
BA 6 HOH F 3 33 38 HOH HOH . 
BA 6 HOH F 4 34 39 HOH HOH . 
BA 6 HOH F 5 35 55 HOH HOH . 
BA 6 HOH F 6 36 63 HOH HOH . 
BA 6 HOH F 7 37 76 HOH HOH . 
BA 6 HOH F 8 38 80 HOH HOH . 
BA 6 HOH F 9 39 87 HOH HOH . 
BA 6 HOH F 10 40 99 HOH HOH . 
BA 6 HOH F 11 41 108 HOH HOH . 
CA 6 HOH G 1 303 15 HOH HOH . 
CA 6 HOH G 2 304 32 HOH HOH . 
CA 6 HOH G 3 305 40 HOH HOH . 
CA 6 HOH G 4 306 62 HOH HOH . 
CA 6 HOH G 5 307 77 HOH HOH . 
CA 6 HOH G 6 308 92 HOH HOH . 
CA 6 HOH G 7 309 94 HOH HOH . 
CA 6 HOH G 8 310 109 HOH HOH . 
DA 6 HOH H 1 41 41 HOH HOH . 
DA 6 HOH H 2 51 51 HOH HOH . 
DA 6 HOH H 3 70 70 HOH HOH . 
DA 6 HOH H 4 73 73 HOH HOH . 
DA 6 HOH H 5 96 96 HOH HOH . 
DA 6 HOH H 6 97 97 HOH HOH . 
DA 6 HOH H 7 100 100 HOH HOH . 
DA 6 HOH H 8 102 102 HOH HOH . 
DA 6 HOH H 9 107 107 HOH HOH . 
EA 6 HOH I 1 306 11 HOH HOH . 
EA 6 HOH I 2 307 19 HOH HOH . 
EA 6 HOH I 3 308 20 HOH HOH . 
EA 6 HOH I 4 309 25 HOH HOH . 
EA 6 HOH I 5 310 36 HOH HOH . 
EA 6 HOH I 6 311 61 HOH HOH . 
EA 6 HOH I 7 312 64 HOH HOH . 
EA 6 HOH I 8 313 81 HOH HOH . 
EA 6 HOH I 9 314 106 HOH HOH . 
EA 6 HOH I 10 315 110 HOH HOH . 
EA 6 HOH I 11 316 116 HOH HOH . 
EA 6 HOH I 12 317 117 HOH HOH . 
EA 6 HOH I 13 318 118 HOH HOH . 
FA 6 HOH J 1 402 3 HOH HOH . 
FA 6 HOH J 2 403 22 HOH HOH . 
FA 6 HOH J 3 404 42 HOH HOH . 
FA 6 HOH J 4 405 50 HOH HOH . 
FA 6 HOH J 5 406 52 HOH HOH . 
FA 6 HOH J 6 407 57 HOH HOH . 
FA 6 HOH J 7 408 75 HOH HOH . 
FA 6 HOH J 8 409 84 HOH HOH . 
FA 6 HOH J 9 410 85 HOH HOH . 
GA 6 HOH K 1 305 16 HOH HOH . 
GA 6 HOH K 2 306 31 HOH HOH . 
GA 6 HOH K 3 307 44 HOH HOH . 
GA 6 HOH K 4 308 49 HOH HOH . 
GA 6 HOH K 5 309 115 HOH HOH . 
HA 6 HOH L 1 31 5 HOH HOH . 
HA 6 HOH L 2 32 10 HOH HOH . 
HA 6 HOH L 3 33 14 HOH HOH . 
HA 6 HOH L 4 34 37 HOH HOH . 
HA 6 HOH L 5 35 60 HOH HOH . 
HA 6 HOH L 6 36 65 HOH HOH . 
HA 6 HOH L 7 37 68 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         N 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               15.402 
_atom_site.Cartn_y               -8.398 
_atom_site.Cartn_z               -6.421 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           210 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#