data_2ONB
#
_model_server_result.job_id            w6l8bW_AP-E9i-zB6kBJsA 
_model_server_result.datetime_utc      '2024-11-25 01:42:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2onb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":319}' 
#
_entry.id    2ONB 
#
_exptl.entry_id    2ONB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.055 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROPANE-1,3-DIYLBIS(PHOSPHONIC ACID)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ONB 
_cell.length_a            95.69 
_cell.length_b            95.69 
_cell.length_c            82.503 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ONB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 55.002 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 42 A ARG 42 1_555 A N CME 43 A CME 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CME 43 A CME 43 1_555 A N GLY 44 A GLY 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale3 A C MET 179 A MET 179 1_555 A N CME 180 A CME 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C CME 180 A CME 180 1_555 A N ALA 181 A ALA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C PRO 194 A PRO 194 1_555 A N CME 195 A CME 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale6 A C CME 195 A CME 195 1_555 A N HIS 196 A HIS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C LEU 198 A LEU 198 1_555 A N CME 199 A CME 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 A C CME 199 A CME 199 1_555 A N GLN 200 A GLN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C3 H10 O6 P2' 
_chem_comp.formula_weight    204.055 
_chem_comp.id                7PA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROPANE-1,3-DIYLBIS(PHOSPHONIC ACID)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P2 7PA doub 1 n n 
O2 P2 7PA sing 2 n n 
O2 HO2 7PA sing 3 n n 
C1 C2 7PA sing 4 n n 
C1 P1 7PA sing 5 n n 
C1 H11 7PA sing 6 n n 
C1 H12 7PA sing 7 n n 
C2 C3 7PA sing 8 n n 
C2 H21 7PA sing 9 n n 
C2 H22 7PA sing 10 n n 
P1 O3 7PA doub 11 n n 
P1 O4 7PA sing 12 n n 
P1 O6 7PA sing 13 n n 
C3 P2 7PA sing 14 n n 
C3 H31 7PA sing 15 n n 
C3 H32 7PA sing 16 n n 
P2 O5 7PA sing 17 n n 
O4 HO4 7PA sing 18 n n 
O5 HO5 7PA sing 19 n n 
O6 HO6 7PA sing 20 n n 
#
_atom_sites.entry_id                     2ONB 
_atom_sites.fract_transf_matrix[1][1]    0.01045 
_atom_sites.fract_transf_matrix[1][2]    0.006034 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012067 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 316 316 SO4 SO4 . 
C 3 EDO A 1 314 314 EDO EDO . 
D 4 7PA A 1 319 319 7PA 7PA . 
E 5 HOH A 1 320 1 HOH HOH . 
E 5 HOH A 2 321 3 HOH HOH . 
E 5 HOH A 3 322 4 HOH HOH . 
E 5 HOH A 4 323 5 HOH HOH . 
E 5 HOH A 5 324 6 HOH HOH . 
E 5 HOH A 6 325 7 HOH HOH . 
E 5 HOH A 7 326 8 HOH HOH . 
E 5 HOH A 8 327 11 HOH HOH . 
E 5 HOH A 9 328 13 HOH HOH . 
E 5 HOH A 10 329 14 HOH HOH . 
E 5 HOH A 11 330 15 HOH HOH . 
E 5 HOH A 12 331 16 HOH HOH . 
E 5 HOH A 13 332 18 HOH HOH . 
E 5 HOH A 14 333 20 HOH HOH . 
E 5 HOH A 15 334 22 HOH HOH . 
E 5 HOH A 16 335 23 HOH HOH . 
E 5 HOH A 17 336 24 HOH HOH . 
E 5 HOH A 18 337 25 HOH HOH . 
E 5 HOH A 19 338 26 HOH HOH . 
E 5 HOH A 20 339 29 HOH HOH . 
E 5 HOH A 21 340 30 HOH HOH . 
E 5 HOH A 22 341 31 HOH HOH . 
E 5 HOH A 23 342 32 HOH HOH . 
E 5 HOH A 24 343 33 HOH HOH . 
E 5 HOH A 25 344 34 HOH HOH . 
E 5 HOH A 26 345 35 HOH HOH . 
E 5 HOH A 27 346 36 HOH HOH . 
E 5 HOH A 28 347 37 HOH HOH . 
E 5 HOH A 29 348 38 HOH HOH . 
E 5 HOH A 30 349 39 HOH HOH . 
E 5 HOH A 31 350 41 HOH HOH . 
E 5 HOH A 32 351 43 HOH HOH . 
E 5 HOH A 33 352 44 HOH HOH . 
E 5 HOH A 34 353 45 HOH HOH . 
E 5 HOH A 35 354 48 HOH HOH . 
E 5 HOH A 36 355 52 HOH HOH . 
E 5 HOH A 37 356 57 HOH HOH . 
E 5 HOH A 38 357 58 HOH HOH . 
E 5 HOH A 39 358 61 HOH HOH . 
E 5 HOH A 40 359 62 HOH HOH . 
E 5 HOH A 41 360 64 HOH HOH . 
E 5 HOH A 42 361 66 HOH HOH . 
E 5 HOH A 43 362 71 HOH HOH . 
E 5 HOH A 44 363 74 HOH HOH . 
E 5 HOH A 45 364 77 HOH HOH . 
E 5 HOH A 46 365 79 HOH HOH . 
E 5 HOH A 47 366 82 HOH HOH . 
E 5 HOH A 48 367 83 HOH HOH . 
E 5 HOH A 49 368 84 HOH HOH . 
E 5 HOH A 50 369 86 HOH HOH . 
E 5 HOH A 51 370 87 HOH HOH . 
E 5 HOH A 52 371 89 HOH HOH . 
E 5 HOH A 53 372 96 HOH HOH . 
E 5 HOH A 54 373 97 HOH HOH . 
E 5 HOH A 55 374 100 HOH HOH . 
E 5 HOH A 56 375 101 HOH HOH . 
E 5 HOH A 57 376 102 HOH HOH . 
E 5 HOH A 58 377 106 HOH HOH . 
E 5 HOH A 59 378 108 HOH HOH . 
E 5 HOH A 60 379 109 HOH HOH . 
E 5 HOH A 61 380 112 HOH HOH . 
E 5 HOH A 62 381 113 HOH HOH . 
E 5 HOH A 63 382 114 HOH HOH . 
E 5 HOH A 64 383 116 HOH HOH . 
E 5 HOH A 65 384 121 HOH HOH . 
E 5 HOH A 66 385 122 HOH HOH . 
E 5 HOH A 67 386 134 HOH HOH . 
E 5 HOH A 68 387 136 HOH HOH . 
E 5 HOH A 69 388 142 HOH HOH . 
E 5 HOH A 70 389 144 HOH HOH . 
E 5 HOH A 71 390 146 HOH HOH . 
E 5 HOH A 72 391 147 HOH HOH . 
E 5 HOH A 73 392 149 HOH HOH . 
E 5 HOH A 74 393 159 HOH HOH . 
E 5 HOH A 75 394 162 HOH HOH . 
E 5 HOH A 76 395 163 HOH HOH . 
E 5 HOH A 77 396 168 HOH HOH . 
E 5 HOH A 78 397 169 HOH HOH . 
E 5 HOH A 79 398 174 HOH HOH . 
E 5 HOH A 80 399 183 HOH HOH . 
E 5 HOH A 81 400 184 HOH HOH . 
E 5 HOH A 82 401 202 HOH HOH . 
E 5 HOH A 83 402 204 HOH HOH . 
E 5 HOH A 84 403 208 HOH HOH . 
E 5 HOH A 85 404 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 7PA . A . D 4 51.481 -14.009 24.891 0.5 85.75 ? O1 7PA 319 A 1 
HETATM 2 O O1 7PA . B . D 4 52.722 -12.819 26.804 0.5 85.75 ? O1 7PA 319 A 1 
HETATM 3 O O2 7PA . A . D 4 52.718 -12.777 26.734 0.5 87.06 ? O2 7PA 319 A 1 
HETATM 4 O O2 7PA . B . D 4 50.244 -13.353 26.937 0.5 87.06 ? O2 7PA 319 A 1 
HETATM 5 C C1 7PA . A . D 4 50.879 -17.694 26.831 0.5 93.98 ? C1 7PA 319 A 1 
HETATM 6 C C1 7PA . B . D 4 53.769 -16.555 28.669 0.5 94.9 ? C1 7PA 319 A 1 
HETATM 7 C C2 7PA . A . D 4 51.314 -16.548 27.753 0.5 90.4 ? C2 7PA 319 A 1 
HETATM 8 C C2 7PA . B . D 4 53.467 -16.063 27.249 0.5 91.82 ? C2 7PA 319 A 1 
HETATM 9 P P1 7PA . A . D 4 50.448 -19.462 27.157 0.5 96.98 ? P1 7PA 319 A 1 
HETATM 10 P P1 7PA . B . D 4 54.56 -18.098 29.314 0.5 96.98 ? P1 7PA 319 A 1 
HETATM 11 C C3 7PA . A . D 4 52.097 -15.44 27.035 0.5 88.66 ? C3 7PA 319 A 1 
HETATM 12 C C3 7PA . B . D 4 52.1 -15.377 27.109 0.5 88.66 ? C3 7PA 319 A 1 
HETATM 13 P P2 7PA . A . D 4 51.592 -13.762 26.415 0.5 87.05 ? P2 7PA 319 A 1 
HETATM 14 P P2 7PA . B . D 4 51.59 -13.765 26.337 0.5 87.05 ? P2 7PA 319 A 1 
HETATM 15 O O3 7PA . A . D 4 51.54 -19.848 28.178 0.5 96.59 ? O3 7PA 319 A 1 
HETATM 16 O O3 7PA . B . D 4 53.919 -19.163 28.393 0.5 96.59 ? O3 7PA 319 A 1 
HETATM 17 O O4 7PA . A . D 4 50.627 -20.264 25.867 0.5 96.39 ? O4 7PA 319 A 1 
HETATM 18 O O4 7PA . B . D 4 54.114 -18.318 30.762 0.5 96.39 ? O4 7PA 319 A 1 
HETATM 19 O O5 7PA . A . D 4 50.256 -13.358 27.02 0.5 85.2 ? O5 7PA 319 A 1 
HETATM 20 O O5 7PA . B . D 4 51.553 -13.895 24.822 0.5 85.2 ? O5 7PA 319 A 1 
HETATM 21 O O6 7PA . A . D 4 49.053 -19.572 27.713 0.5 95.59 ? O6 7PA 319 A 1 
HETATM 22 O O6 7PA . B . D 4 56.059 -18.021 29.176 0.5 95.59 ? O6 7PA 319 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           22 
#