data_2ONG # _model_server_result.job_id aEeGHCMT-3cImzdVCVoXTg _model_server_result.datetime_utc '2024-12-02 11:03:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ong # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 2ONG # _exptl.entry_id 2ONG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.231 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL TRIHYDROGEN DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ONG _cell.length_a 200.48 _cell.length_b 200.48 _cell.length_c 123.41 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ONG _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 296 A ASP 352 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A OD2 ASP 296 A ASP 352 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc3 A OD2 ASP 300 A ASP 356 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A OD2 ASP 300 A ASP 356 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc5 A OD2 ASP 440 A ASP 496 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 A OG1 THR 444 A THR 500 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 F O2B FPG . A FPG 600 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc8 F O2A FPG . A FPG 600 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc9 F O2B FPG . A FPG 600 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 F O1A FPG . A FPG 600 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 F O1B FPG . A FPG 600 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc12 B OD2 ASP 296 B ASP 352 1_555 I MN MN . B MN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc13 B OD1 ASP 296 B ASP 352 1_555 J MN MN . B MN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc14 B OD1 ASP 300 B ASP 356 1_555 I MN MN . B MN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc15 B OD1 ASP 300 B ASP 356 1_555 J MN MN . B MN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc16 B OD2 ASP 440 B ASP 496 1_555 K MN MN . B MN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc17 L O2B FPG . B FPG 1600 1_555 I MN MN . B MN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc18 L O2A FPG . B FPG 1600 1_555 J MN MN . B MN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc19 L O2B FPG . B FPG 1600 1_555 J MN MN . B MN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc20 L O1A FPG . B FPG 1600 1_555 K MN MN . B MN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc21 L O1B FPG . B FPG 1600 1_555 K MN MN . B MN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? # _chem_comp.formula 'C10 H23 F O7 P2' _chem_comp.formula_weight 336.231 _chem_comp.id FPG _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL TRIHYDROGEN DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C7 FPG sing 115 n n C9 H91 FPG sing 116 n n C9 H92 FPG sing 117 n n C9 H93 FPG sing 118 n n C7 C8 FPG sing 119 n n C7 C6 FPG sing 120 n n C7 H7 FPG sing 121 n n C6 C5 FPG sing 122 n n C6 H61 FPG sing 123 n n C6 H62 FPG sing 124 n n C8 H81 FPG sing 125 n n C8 H82 FPG sing 126 n n C8 H83 FPG sing 127 n n C2 F FPG sing 128 n n C2 C3 FPG sing 129 n n C2 C1 FPG sing 130 n n C2 H2 FPG sing 131 n n C1 H11 FPG sing 132 n n C1 H12 FPG sing 133 n n C1 H13 FPG sing 134 n n C10 C3 FPG sing 135 n n C10 H101 FPG sing 136 n n C10 H102 FPG sing 137 n n C10 H103 FPG sing 138 n n C5 C4 FPG sing 139 n n C5 H51 FPG sing 140 n n C5 H52 FPG sing 141 n n C4 C3 FPG sing 142 n n C4 H41 FPG sing 143 n n C4 H42 FPG sing 144 n n C3 O1 FPG sing 145 n n O1 PA FPG sing 146 n n PA O3A FPG sing 147 n n PA O1A FPG doub 148 n n PA O2A FPG sing 149 n n O2A HO2A FPG sing 150 n n O3A PB FPG sing 151 n n PB O3B FPG doub 152 n n PB O1B FPG sing 153 n n PB O2B FPG sing 154 n n O2B HO2B FPG sing 155 n n O1B HO1B FPG sing 156 n n # _atom_sites.entry_id 2ONG _atom_sites.fract_transf_matrix[1][1] 0.004988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 601 601 MN MN . D 2 MN A 1 602 602 MN MN . E 2 MN A 1 603 603 MN MN . F 3 FPG A 1 600 600 FPG FPG . G 4 BTB A 1 604 604 BTB BTB . H 4 BTB A 1 605 605 BTB BTB . I 2 MN B 1 1601 1601 MN MN4 . J 2 MN B 1 1602 1602 MN MN5 . K 2 MN B 1 1603 1603 MN MN6 . L 3 FPG B 1 1600 1600 FPG FPG . M 4 BTB B 1 1604 1604 BTB BTB . N 4 BTB B 1 1605 1605 BTB BTB . O 5 HOH A 1 700 700 HOH TIP . O 5 HOH A 2 704 704 HOH TIP . O 5 HOH A 3 705 705 HOH TIP . O 5 HOH A 4 706 706 HOH TIP . O 5 HOH A 5 707 707 HOH TIP . O 5 HOH A 6 708 708 HOH TIP . O 5 HOH A 7 711 711 HOH TIP . O 5 HOH A 8 713 713 HOH TIP . O 5 HOH A 9 718 718 HOH TIP . O 5 HOH A 10 723 723 HOH TIP . O 5 HOH A 11 727 727 HOH TIP . O 5 HOH A 12 732 732 HOH TIP . O 5 HOH A 13 734 734 HOH TIP . O 5 HOH A 14 735 735 HOH TIP . O 5 HOH A 15 739 739 HOH TIP . O 5 HOH A 16 740 740 HOH TIP . O 5 HOH A 17 741 741 HOH TIP . O 5 HOH A 18 742 742 HOH TIP . O 5 HOH A 19 743 743 HOH TIP . O 5 HOH A 20 745 745 HOH TIP . O 5 HOH A 21 748 748 HOH TIP . O 5 HOH A 22 752 752 HOH TIP . O 5 HOH A 23 753 753 HOH TIP . O 5 HOH A 24 754 754 HOH TIP . O 5 HOH A 25 755 755 HOH TIP . O 5 HOH A 26 756 756 HOH TIP . O 5 HOH A 27 757 757 HOH TIP . O 5 HOH A 28 758 758 HOH TIP . O 5 HOH A 29 759 759 HOH TIP . O 5 HOH A 30 760 760 HOH TIP . O 5 HOH A 31 761 761 HOH TIP . O 5 HOH A 32 762 762 HOH TIP . O 5 HOH A 33 771 771 HOH TIP . O 5 HOH A 34 782 782 HOH TIP . O 5 HOH A 35 786 786 HOH TIP . O 5 HOH A 36 787 787 HOH TIP . O 5 HOH A 37 788 788 HOH TIP . O 5 HOH A 38 789 789 HOH TIP . O 5 HOH A 39 791 791 HOH TIP . P 5 HOH B 1 701 701 HOH TIP . P 5 HOH B 2 702 702 HOH TIP . P 5 HOH B 3 703 703 HOH TIP . P 5 HOH B 4 709 709 HOH TIP . P 5 HOH B 5 710 710 HOH TIP . P 5 HOH B 6 712 712 HOH TIP . P 5 HOH B 7 714 714 HOH TIP . P 5 HOH B 8 715 715 HOH TIP . P 5 HOH B 9 716 716 HOH TIP . P 5 HOH B 10 717 717 HOH TIP . P 5 HOH B 11 719 719 HOH TIP . P 5 HOH B 12 720 720 HOH TIP . P 5 HOH B 13 721 721 HOH TIP . P 5 HOH B 14 722 722 HOH TIP . P 5 HOH B 15 724 724 HOH TIP . P 5 HOH B 16 725 725 HOH TIP . P 5 HOH B 17 726 726 HOH TIP . P 5 HOH B 18 728 728 HOH TIP . P 5 HOH B 19 729 729 HOH TIP . P 5 HOH B 20 730 730 HOH TIP . P 5 HOH B 21 731 731 HOH TIP . P 5 HOH B 22 733 733 HOH TIP . P 5 HOH B 23 736 736 HOH TIP . P 5 HOH B 24 737 737 HOH TIP . P 5 HOH B 25 738 738 HOH TIP . P 5 HOH B 26 744 744 HOH TIP . P 5 HOH B 27 746 746 HOH TIP . P 5 HOH B 28 747 747 HOH TIP . P 5 HOH B 29 749 749 HOH TIP . P 5 HOH B 30 750 750 HOH TIP . P 5 HOH B 31 751 751 HOH TIP . P 5 HOH B 32 763 763 HOH TIP . P 5 HOH B 33 764 764 HOH TIP . P 5 HOH B 34 765 765 HOH TIP . P 5 HOH B 35 766 766 HOH TIP . P 5 HOH B 36 767 767 HOH TIP . P 5 HOH B 37 768 768 HOH TIP . P 5 HOH B 38 769 769 HOH TIP . P 5 HOH B 39 770 770 HOH TIP . P 5 HOH B 40 772 772 HOH TIP . P 5 HOH B 41 773 773 HOH TIP . P 5 HOH B 42 774 774 HOH TIP . P 5 HOH B 43 775 775 HOH TIP . P 5 HOH B 44 776 776 HOH TIP . P 5 HOH B 45 777 777 HOH TIP . P 5 HOH B 46 778 778 HOH TIP . P 5 HOH B 47 779 779 HOH TIP . P 5 HOH B 48 780 780 HOH TIP . P 5 HOH B 49 781 781 HOH TIP . P 5 HOH B 50 783 783 HOH TIP . P 5 HOH B 51 784 784 HOH TIP . P 5 HOH B 52 785 785 HOH TIP . P 5 HOH B 53 790 790 HOH TIP . P 5 HOH B 54 792 792 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 FPG . . . F 3 19.996 58.395 -56.441 1 71.36 ? C9 FPG 600 A 1 HETATM 2 C C7 FPG . . . F 3 21.155 57.561 -56.357 1 63.83 ? C7 FPG 600 A 1 HETATM 3 C C6 FPG . . . F 3 21.296 56.539 -55.225 1 60.64 ? C6 FPG 600 A 1 HETATM 4 C C8 FPG . . . F 3 22.11 57.588 -57.424 1 69.84 ? C8 FPG 600 A 1 HETATM 5 C C2 FPG . . . F 3 22.096 54.594 -52.824 1 73.95 ? C2 FPG 600 A 1 HETATM 6 C C1 FPG . . . F 3 20.73 54.623 -52.399 1 76.47 ? C1 FPG 600 A 1 HETATM 7 C C10 FPG . . . F 3 22.309 56.814 -51.703 1 75.21 ? C10 FPG 600 A 1 HETATM 8 C C5 FPG . . . F 3 22.693 55.917 -55.171 1 59.02 ? C5 FPG 600 A 1 HETATM 9 C C4 FPG . . . F 3 23.454 56.349 -53.915 1 66.05 ? C4 FPG 600 A 1 HETATM 10 F F FPG . . . F 3 22.576 53.517 -53.448 1 82.67 ? F FPG 600 A 1 HETATM 11 C C3 FPG . . . F 3 22.91 55.699 -52.582 1 72.76 ? C3 FPG 600 A 1 HETATM 12 O O1 FPG . . . F 3 24.093 55.361 -51.842 1 74.87 ? O1 FPG 600 A 1 HETATM 13 P PA FPG . . . F 3 24.096 54.408 -50.544 1 72.26 ? PA FPG 600 A 1 HETATM 14 O O1A FPG . . . F 3 25.491 54.692 -49.804 1 66.58 ? O1A FPG 600 A 1 HETATM 15 O O2A FPG . . . F 3 22.926 54.605 -49.661 1 72.81 ? O2A FPG 600 A 1 HETATM 16 O O3A FPG . . . F 3 24.177 52.905 -51.121 1 68.17 ? O3A FPG 600 A 1 HETATM 17 P PB FPG . . . F 3 24.923 51.735 -50.302 1 64.08 ? PB FPG 600 A 1 HETATM 18 O O2B FPG . . . F 3 23.812 51.039 -49.373 1 54.59 ? O2B FPG 600 A 1 HETATM 19 O O3B FPG . . . F 3 25.362 50.657 -51.411 1 70.06 ? O3B FPG 600 A 1 HETATM 20 O O1B FPG . . . F 3 26.086 52.25 -49.545 1 67.52 ? O1B FPG 600 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 498 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #