data_2ONI # _model_server_result.job_id neMNP4Pun2pHlVTN3kOSCA _model_server_result.datetime_utc '2025-03-06 03:12:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 2ONI # _exptl.entry_id 2ONI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ONI _cell.length_a 103.058 _cell.length_b 103.058 _cell.length_c 182.214 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ONI _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PQS monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3,4,5,6,2 A,B,C 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 91.107 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 103.058 0 0 4 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.529 89.250846 0 5 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 51.529 89.250846 91.107 6 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 103.058 0 91.107 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 44 A GLU 599 1_555 A N MSE 45 A MSE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 45 A MSE 600 1_555 A N LYS 46 A LYS 601 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C MSE 45 A MSE 600 1_555 A N LYS 46 A LYS 601 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C ILE 60 A ILE 615 1_555 A N MSE 61 A MSE 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 61 A MSE 616 1_555 A N SER 62 A SER 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C GLU 99 A GLU 654 1_555 A N MSE 100 A MSE 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 100 A MSE 655 1_555 A N PHE 101 A PHE 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C LYS 162 A LYS 717 1_555 A N MSE 163 A MSE 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C MSE 163 A MSE 718 1_555 A N MSE 164 A MSE 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C MSE 164 A MSE 719 1_555 A N LEU 165 A LEU 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C ASP 173 A ASP 728 1_555 A N MSE 174 A MSE 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 A C MSE 174 A MSE 729 1_555 A N GLU 175 A GLU 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C LEU 198 A LEU 753 1_555 A N MSE 199 A MSE 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C MSE 199 A MSE 754 1_555 A N PHE 200 A PHE 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 A C ILE 222 A ILE 777 1_555 A N MSE 223 A MSE 778 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.32 ? covale ? covale16 A C ILE 222 A ILE 777 1_555 A N MSE 223 A MSE 778 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.268 ? covale ? covale17 A C MSE 223 A MSE 778 1_555 A N VAL 224 A VAL 779 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale18 A C MSE 223 A MSE 778 1_555 A N VAL 224 A VAL 779 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale19 A C GLN 248 A GLN 803 1_555 A N MSE 249 A MSE 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale20 A C MSE 249 A MSE 804 1_555 A N ASN 250 A ASN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale21 A C LEU 276 A LEU 831 1_555 A N MSE 277 A MSE 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale22 A C MSE 277 A MSE 832 1_555 A N CYS 278 A CYS 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 A C LEU 314 A LEU 869 1_555 A N MSE 315 A MSE 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 A C MSE 315 A MSE 870 1_555 A N ASP 316 A ASP 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale25 A C PRO 334 A PRO 889 1_555 A N MSE 335 A MSE 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale26 A C MSE 335 A MSE 890 1_555 A N ASN 336 A ASN 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale27 A C LEU 387 A LEU 942 1_555 A N MSE 388 A MSE 943 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale28 A C MSE 388 A MSE 943 1_555 A N ALA 389 A ALA 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A O THR 328 A THR 883 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc2 A O THR 366 A THR 921 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc3 A OD1 ASN 369 A ASN 924 1_555 B NA NA . A NA 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ONI _atom_sites.fract_transf_matrix[1][1] 0.009703 _atom_sites.fract_transf_matrix[1][2] 0.005602 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1000 1000 NA NA . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 57 57 HOH HOH . C 3 HOH A 57 58 58 HOH HOH . C 3 HOH A 58 59 59 HOH HOH . C 3 HOH A 59 60 60 HOH HOH . C 3 HOH A 60 61 61 HOH HOH . C 3 HOH A 61 62 62 HOH HOH . C 3 HOH A 62 63 63 HOH HOH . C 3 HOH A 63 64 64 HOH HOH . C 3 HOH A 64 65 65 HOH HOH . C 3 HOH A 65 66 66 HOH HOH . C 3 HOH A 66 67 67 HOH HOH . C 3 HOH A 67 68 68 HOH HOH . C 3 HOH A 68 69 69 HOH HOH . C 3 HOH A 69 70 70 HOH HOH . C 3 HOH A 70 71 71 HOH HOH . C 3 HOH A 71 72 72 HOH HOH . C 3 HOH A 72 73 73 HOH HOH . C 3 HOH A 73 74 74 HOH HOH . C 3 HOH A 74 75 75 HOH HOH . C 3 HOH A 75 76 76 HOH HOH . C 3 HOH A 76 77 77 HOH HOH . C 3 HOH A 77 78 78 HOH HOH . C 3 HOH A 78 79 79 HOH HOH . C 3 HOH A 79 80 80 HOH HOH . C 3 HOH A 80 81 81 HOH HOH . C 3 HOH A 81 82 82 HOH HOH . C 3 HOH A 82 83 83 HOH HOH . C 3 HOH A 83 84 84 HOH HOH . C 3 HOH A 84 85 85 HOH HOH . C 3 HOH A 85 86 86 HOH HOH . C 3 HOH A 86 87 87 HOH HOH . C 3 HOH A 87 88 88 HOH HOH . C 3 HOH A 88 89 89 HOH HOH . C 3 HOH A 89 90 90 HOH HOH . C 3 HOH A 90 91 91 HOH HOH . C 3 HOH A 91 92 92 HOH HOH . C 3 HOH A 92 93 93 HOH HOH . C 3 HOH A 93 94 94 HOH HOH . C 3 HOH A 94 95 95 HOH HOH . C 3 HOH A 95 96 96 HOH HOH . C 3 HOH A 96 97 97 HOH HOH . C 3 HOH A 97 98 98 HOH HOH . C 3 HOH A 98 99 99 HOH HOH . C 3 HOH A 99 100 100 HOH HOH . C 3 HOH A 100 101 101 HOH HOH . C 3 HOH A 101 102 102 HOH HOH . C 3 HOH A 102 103 103 HOH HOH . C 3 HOH A 103 104 104 HOH HOH . C 3 HOH A 104 105 105 HOH HOH . C 3 HOH A 105 106 106 HOH HOH . C 3 HOH A 106 107 107 HOH HOH . C 3 HOH A 107 108 108 HOH HOH . C 3 HOH A 108 109 109 HOH HOH . C 3 HOH A 109 110 110 HOH HOH . C 3 HOH A 110 111 111 HOH HOH . C 3 HOH A 111 112 112 HOH HOH . C 3 HOH A 112 113 113 HOH HOH . C 3 HOH A 113 114 114 HOH HOH . C 3 HOH A 114 115 115 HOH HOH . C 3 HOH A 115 116 116 HOH HOH . C 3 HOH A 116 117 117 HOH HOH . C 3 HOH A 117 118 118 HOH HOH . C 3 HOH A 118 119 119 HOH HOH . C 3 HOH A 119 120 120 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.575 _atom_site.Cartn_y 33.944 _atom_site.Cartn_z 36.962 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1000 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #