data_2ONJ # _model_server_result.job_id CqIPMqAzX4ci9usb100kFg _model_server_result.datetime_utc '2024-12-02 07:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2onj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":700}' # _entry.id 2ONJ # _exptl.entry_id 2ONJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.23 _cell.angle_gamma 90 _cell.entry_id 2ONJ _cell.length_a 160.961 _cell.length_b 104.447 _cell.length_c 181.391 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ONJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 367 A GLY 367 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc2 A OG1 THR 369 A THR 369 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc3 A OG SER 381 A SER 381 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 A OE1 GLN 422 A GLN 422 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 A O SER 524 A SER 524 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc6 A O ARG 527 A ARG 527 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc7 E N3B ANP . A ANP 701 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc8 E O3G ANP . A ANP 701 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc9 B O GLY 367 B GLY 367 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc10 B OG1 THR 369 B THR 369 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc11 B OG SER 381 B SER 381 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc12 B OE1 GLN 422 B GLN 422 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc13 B O SER 524 B SER 524 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc14 B O ARG 527 B ARG 527 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc15 H N3B ANP . B ANP 700 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc16 H O3G ANP . B ANP 700 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc17 J O HOH . B HOH 808 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2ONJ _atom_sites.fract_transf_matrix[1][1] 0.006213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000899 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 900 900 NA NA . D 2 NA A 1 911 911 NA NA . E 3 ANP A 1 701 701 ANP ANP . F 2 NA B 1 901 901 NA NA . G 2 NA B 1 910 910 NA NA . H 3 ANP B 1 700 700 ANP ANP . I 4 HOH A 1 800 800 HOH HOH . I 4 HOH A 2 801 801 HOH HOH . I 4 HOH A 3 804 804 HOH HOH . I 4 HOH A 4 805 805 HOH HOH . I 4 HOH A 5 806 806 HOH HOH . I 4 HOH A 6 807 807 HOH HOH . I 4 HOH A 7 812 812 HOH HOH . I 4 HOH A 8 813 813 HOH HOH . I 4 HOH A 9 818 818 HOH HOH . I 4 HOH A 10 819 819 HOH HOH . J 4 HOH B 1 802 802 HOH HOH . J 4 HOH B 2 803 803 HOH HOH . J 4 HOH B 3 808 808 HOH HOH . J 4 HOH B 4 809 809 HOH HOH . J 4 HOH B 5 810 810 HOH HOH . J 4 HOH B 6 811 811 HOH HOH . J 4 HOH B 7 814 814 HOH HOH . J 4 HOH B 8 815 815 HOH HOH . J 4 HOH B 9 816 816 HOH HOH . J 4 HOH B 10 817 817 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 3 99.235 77.686 175.118 1 74.95 ? PG ANP 700 B 1 HETATM 2 O O1G ANP . . . H 3 97.77 78.391 175.375 1 74.95 ? O1G ANP 700 B 1 HETATM 3 O O2G ANP . . . H 3 99.036 76.407 173.967 1 74.95 ? O2G ANP 700 B 1 HETATM 4 O O3G ANP . . . H 3 99.876 77.148 176.674 1 74.95 ? O3G ANP 700 B 1 HETATM 5 P PB ANP . . . H 3 100.847 80.098 175.105 1 74.95 ? PB ANP 700 B 1 HETATM 6 O O1B ANP . . . H 3 99.663 80.83 175.892 1 74.95 ? O1B ANP 700 B 1 HETATM 7 O O2B ANP . . . H 3 101.92 79.649 176.215 1 74.95 ? O2B ANP 700 B 1 HETATM 8 N N3B ANP . . . H 3 100.312 78.672 174.209 1 74.95 ? N3B ANP 700 B 1 HETATM 9 P PA ANP . . . H 3 101.702 82.194 173.909 1 74.95 ? PA ANP 700 B 1 HETATM 10 O O1A ANP . . . H 3 100.662 82.804 174.934 1 74.95 ? O1A ANP 700 B 1 HETATM 11 O O2A ANP . . . H 3 103.254 82.249 174.616 1 74.95 ? O2A ANP 700 B 1 HETATM 12 O O3A ANP . . . H 3 101.534 80.683 173.597 1 74.95 ? O3A ANP 700 B 1 HETATM 13 O O5' ANP . . . H 3 101.942 82.857 172.424 1 74.95 ? O5' ANP 700 B 1 HETATM 14 C C5' ANP . . . H 3 101.241 84.232 172.362 1 74.95 ? C5' ANP 700 B 1 HETATM 15 C C4' ANP . . . H 3 101.523 84.498 170.939 1 74.95 ? C4' ANP 700 B 1 HETATM 16 O O4' ANP . . . H 3 102.194 83.637 170.134 1 74.95 ? O4' ANP 700 B 1 HETATM 17 C C3' ANP . . . H 3 100.452 85.277 169.989 1 74.95 ? C3' ANP 700 B 1 HETATM 18 O O3' ANP . . . H 3 99.761 86.487 170.36 1 74.95 ? O3' ANP 700 B 1 HETATM 19 C C2' ANP . . . H 3 101.373 85.274 168.689 1 74.95 ? C2' ANP 700 B 1 HETATM 20 O O2' ANP . . . H 3 101.482 86.524 167.93 1 74.95 ? O2' ANP 700 B 1 HETATM 21 C C1' ANP . . . H 3 102.703 84.67 169.35 1 74.95 ? C1' ANP 700 B 1 HETATM 22 N N9 ANP . . . H 3 103.723 84.183 168.507 1 74.95 ? N9 ANP 700 B 1 HETATM 23 C C8 ANP . . . H 3 104.363 82.925 168.641 1 74.95 ? C8 ANP 700 B 1 HETATM 24 N N7 ANP . . . H 3 105.262 82.78 167.731 1 74.95 ? N7 ANP 700 B 1 HETATM 25 C C5 ANP . . . H 3 105.253 83.904 166.954 1 74.95 ? C5 ANP 700 B 1 HETATM 26 C C6 ANP . . . H 3 105.994 84.31 165.837 1 74.95 ? C6 ANP 700 B 1 HETATM 27 N N6 ANP . . . H 3 106.978 83.399 165.382 1 74.95 ? N6 ANP 700 B 1 HETATM 28 N N1 ANP . . . H 3 105.699 85.608 165.251 1 74.95 ? N1 ANP 700 B 1 HETATM 29 C C2 ANP . . . H 3 104.694 86.45 165.804 1 74.95 ? C2 ANP 700 B 1 HETATM 30 N N3 ANP . . . H 3 103.997 86.048 166.899 1 74.95 ? N3 ANP 700 B 1 HETATM 31 C C4 ANP . . . H 3 104.243 84.808 167.453 1 74.95 ? C4 ANP 700 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #