data_2ONJ # _model_server_result.job_id EpVANtATOcpNWDf-Of57rQ _model_server_result.datetime_utc '2024-11-13 10:33:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2onj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":911}' # _entry.id 2ONJ # _exptl.entry_id 2ONJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.23 _cell.angle_gamma 90 _cell.entry_id 2ONJ _cell.length_a 160.961 _cell.length_b 104.447 _cell.length_c 181.391 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ONJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 367 A GLY 367 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc2 A OG1 THR 369 A THR 369 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc3 A OG SER 381 A SER 381 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 A OE1 GLN 422 A GLN 422 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 A O SER 524 A SER 524 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc6 A O ARG 527 A ARG 527 1_555 C NA NA . A NA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc7 E N3B ANP . A ANP 701 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc8 E O3G ANP . A ANP 701 1_555 D NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc9 B O GLY 367 B GLY 367 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc10 B OG1 THR 369 B THR 369 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc11 B OG SER 381 B SER 381 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc12 B OE1 GLN 422 B GLN 422 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc13 B O SER 524 B SER 524 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc14 B O ARG 527 B ARG 527 1_555 G NA NA . B NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc15 H N3B ANP . B ANP 700 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc16 H O3G ANP . B ANP 700 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc17 J O HOH . B HOH 808 1_555 F NA NA . B NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ONJ _atom_sites.fract_transf_matrix[1][1] 0.006213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000899 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 900 900 NA NA . D 2 NA A 1 911 911 NA NA . E 3 ANP A 1 701 701 ANP ANP . F 2 NA B 1 901 901 NA NA . G 2 NA B 1 910 910 NA NA . H 3 ANP B 1 700 700 ANP ANP . I 4 HOH A 1 800 800 HOH HOH . I 4 HOH A 2 801 801 HOH HOH . I 4 HOH A 3 804 804 HOH HOH . I 4 HOH A 4 805 805 HOH HOH . I 4 HOH A 5 806 806 HOH HOH . I 4 HOH A 6 807 807 HOH HOH . I 4 HOH A 7 812 812 HOH HOH . I 4 HOH A 8 813 813 HOH HOH . I 4 HOH A 9 818 818 HOH HOH . I 4 HOH A 10 819 819 HOH HOH . J 4 HOH B 1 802 802 HOH HOH . J 4 HOH B 2 803 803 HOH HOH . J 4 HOH B 3 808 808 HOH HOH . J 4 HOH B 4 809 809 HOH HOH . J 4 HOH B 5 810 810 HOH HOH . J 4 HOH B 6 811 811 HOH HOH . J 4 HOH B 7 814 814 HOH HOH . J 4 HOH B 8 815 815 HOH HOH . J 4 HOH B 9 816 816 HOH HOH . J 4 HOH B 10 817 817 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 95.661 _atom_site.Cartn_y 59.702 _atom_site.Cartn_z 171.176 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 911 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #