data_2ONZ
#
_model_server_result.job_id            jtstf-35bb_Z-i9loRlkWA 
_model_server_result.datetime_utc      '2024-11-04 22:56:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2onz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3002}' 
#
_entry.id    2ONZ 
#
_exptl.entry_id    2ONZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ONZ 
_cell.length_a            94.49 
_cell.length_b            94.49 
_cell.length_c            187.88 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ONZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     2ONZ 
_atom_sites.fract_transf_matrix[1][1]    0.010583 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005323 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 3001 3001 SAH SAH . 
D 3 TMJ A 1 2001 2001 TMJ TMC . 
E 2 SAH B 1 3002 3002 SAH SAH . 
F 3 TMJ B 1 2002 2002 TMJ TMC . 
G 4 HOH A 1 3002 1 HOH HOH . 
G 4 HOH A 2 3003 2 HOH HOH . 
G 4 HOH A 3 3004 3 HOH HOH . 
G 4 HOH A 4 3005 4 HOH HOH . 
G 4 HOH A 5 3006 5 HOH HOH . 
G 4 HOH A 6 3007 6 HOH HOH . 
G 4 HOH A 7 3008 7 HOH HOH . 
G 4 HOH A 8 3009 8 HOH HOH . 
G 4 HOH A 9 3010 9 HOH HOH . 
G 4 HOH A 10 3011 10 HOH HOH . 
G 4 HOH A 11 3012 11 HOH HOH . 
G 4 HOH A 12 3013 12 HOH HOH . 
G 4 HOH A 13 3014 13 HOH HOH . 
G 4 HOH A 14 3015 14 HOH HOH . 
G 4 HOH A 15 3016 15 HOH HOH . 
G 4 HOH A 16 3017 16 HOH HOH . 
G 4 HOH A 17 3018 18 HOH HOH . 
G 4 HOH A 18 3019 19 HOH HOH . 
G 4 HOH A 19 3020 35 HOH HOH . 
G 4 HOH A 20 3021 37 HOH HOH . 
G 4 HOH A 21 3022 39 HOH HOH . 
G 4 HOH A 22 3023 40 HOH HOH . 
G 4 HOH A 23 3024 42 HOH HOH . 
G 4 HOH A 24 3025 43 HOH HOH . 
G 4 HOH A 25 3026 44 HOH HOH . 
G 4 HOH A 26 3027 48 HOH HOH . 
G 4 HOH A 27 3028 49 HOH HOH . 
G 4 HOH A 28 3029 54 HOH HOH . 
G 4 HOH A 29 3030 55 HOH HOH . 
G 4 HOH A 30 3031 56 HOH HOH . 
G 4 HOH A 31 3032 62 HOH HOH . 
G 4 HOH A 32 3033 66 HOH HOH . 
G 4 HOH A 33 3034 67 HOH HOH . 
G 4 HOH A 34 3035 76 HOH HOH . 
G 4 HOH A 35 3036 79 HOH HOH . 
G 4 HOH A 36 3037 82 HOH HOH . 
G 4 HOH A 37 3038 85 HOH HOH . 
G 4 HOH A 38 3039 92 HOH HOH . 
G 4 HOH A 39 3040 98 HOH HOH . 
G 4 HOH A 40 3041 103 HOH HOH . 
G 4 HOH A 41 3042 105 HOH HOH . 
G 4 HOH A 42 3043 106 HOH HOH . 
G 4 HOH A 43 3044 107 HOH HOH . 
G 4 HOH A 44 3045 114 HOH HOH . 
G 4 HOH A 45 3046 115 HOH HOH . 
G 4 HOH A 46 3047 119 HOH HOH . 
G 4 HOH A 47 3048 120 HOH HOH . 
G 4 HOH A 48 3049 121 HOH HOH . 
G 4 HOH A 49 3050 123 HOH HOH . 
G 4 HOH A 50 3051 124 HOH HOH . 
G 4 HOH A 51 3052 125 HOH HOH . 
H 4 HOH B 1 3003 20 HOH HOH . 
H 4 HOH B 2 3004 21 HOH HOH . 
H 4 HOH B 3 3005 22 HOH HOH . 
H 4 HOH B 4 3006 23 HOH HOH . 
H 4 HOH B 5 3007 24 HOH HOH . 
H 4 HOH B 6 3008 25 HOH HOH . 
H 4 HOH B 7 3009 26 HOH HOH . 
H 4 HOH B 8 3010 27 HOH HOH . 
H 4 HOH B 9 3011 28 HOH HOH . 
H 4 HOH B 10 3012 29 HOH HOH . 
H 4 HOH B 11 3013 30 HOH HOH . 
H 4 HOH B 12 3014 31 HOH HOH . 
H 4 HOH B 13 3015 32 HOH HOH . 
H 4 HOH B 14 3016 34 HOH HOH . 
H 4 HOH B 15 3017 36 HOH HOH . 
H 4 HOH B 16 3018 38 HOH HOH . 
H 4 HOH B 17 3019 41 HOH HOH . 
H 4 HOH B 18 3020 46 HOH HOH . 
H 4 HOH B 19 3021 47 HOH HOH . 
H 4 HOH B 20 3022 51 HOH HOH . 
H 4 HOH B 21 3023 53 HOH HOH . 
H 4 HOH B 22 3024 57 HOH HOH . 
H 4 HOH B 23 3025 58 HOH HOH . 
H 4 HOH B 24 3026 59 HOH HOH . 
H 4 HOH B 25 3027 60 HOH HOH . 
H 4 HOH B 26 3028 61 HOH HOH . 
H 4 HOH B 27 3029 63 HOH HOH . 
H 4 HOH B 28 3030 65 HOH HOH . 
H 4 HOH B 29 3031 68 HOH HOH . 
H 4 HOH B 30 3032 69 HOH HOH . 
H 4 HOH B 31 3033 70 HOH HOH . 
H 4 HOH B 32 3034 71 HOH HOH . 
H 4 HOH B 33 3035 72 HOH HOH . 
H 4 HOH B 34 3036 73 HOH HOH . 
H 4 HOH B 35 3037 74 HOH HOH . 
H 4 HOH B 36 3038 75 HOH HOH . 
H 4 HOH B 37 3039 87 HOH HOH . 
H 4 HOH B 38 3040 90 HOH HOH . 
H 4 HOH B 39 3041 93 HOH HOH . 
H 4 HOH B 40 3042 94 HOH HOH . 
H 4 HOH B 41 3043 95 HOH HOH . 
H 4 HOH B 42 3044 96 HOH HOH . 
H 4 HOH B 43 3045 99 HOH HOH . 
H 4 HOH B 44 3046 100 HOH HOH . 
H 4 HOH B 45 3047 101 HOH HOH . 
H 4 HOH B 46 3048 102 HOH HOH . 
H 4 HOH B 47 3049 104 HOH HOH . 
H 4 HOH B 48 3050 108 HOH HOH . 
H 4 HOH B 49 3051 111 HOH HOH . 
H 4 HOH B 50 3052 112 HOH HOH . 
H 4 HOH B 51 3053 116 HOH HOH . 
H 4 HOH B 52 3054 117 HOH HOH . 
H 4 HOH B 53 3055 118 HOH HOH . 
H 4 HOH B 54 3056 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . E 2 28.139 51.147 -27.698 1 45.24 ? N SAH 3002 B 1 
HETATM 2 C CA SAH . . . E 2 29.016 52.092 -27.009 1 45.19 ? CA SAH 3002 B 1 
HETATM 3 C CB SAH . . . E 2 29.948 52.808 -28.014 1 47.34 ? CB SAH 3002 B 1 
HETATM 4 C CG SAH . . . E 2 29.256 53.567 -29.165 1 49.46 ? CG SAH 3002 B 1 
HETATM 5 S SD SAH . . . E 2 30.434 54.51 -30.167 1 49 ? SD SAH 3002 B 1 
HETATM 6 C C SAH . . . E 2 28.205 53.096 -26.2 1 44.55 ? C SAH 3002 B 1 
HETATM 7 O O SAH . . . E 2 27.005 52.823 -25.975 1 42.63 ? O SAH 3002 B 1 
HETATM 8 O OXT SAH . . . E 2 28.784 54.131 -25.792 1 43.42 ? OXT SAH 3002 B 1 
HETATM 9 C C5' SAH . . . E 2 30.338 53.7 -31.783 1 49.19 ? C5' SAH 3002 B 1 
HETATM 10 C C4' SAH . . . E 2 31.154 52.436 -31.882 1 50.97 ? C4' SAH 3002 B 1 
HETATM 11 O O4' SAH . . . E 2 31.006 51.809 -33.184 1 53.55 ? O4' SAH 3002 B 1 
HETATM 12 C C3' SAH . . . E 2 32.653 52.539 -31.622 1 51.71 ? C3' SAH 3002 B 1 
HETATM 13 O O3' SAH . . . E 2 33.018 51.602 -30.622 1 50.75 ? O3' SAH 3002 B 1 
HETATM 14 C C2' SAH . . . E 2 33.275 52.208 -32.976 1 52.71 ? C2' SAH 3002 B 1 
HETATM 15 O O2' SAH . . . E 2 34.528 51.566 -32.891 1 54.91 ? O2' SAH 3002 B 1 
HETATM 16 C C1' SAH . . . E 2 32.243 51.249 -33.558 1 54.12 ? C1' SAH 3002 B 1 
HETATM 17 N N9 SAH . . . E 2 32.28 51.096 -35.015 1 54.8 ? N9 SAH 3002 B 1 
HETATM 18 C C8 SAH . . . E 2 32.963 51.877 -35.967 1 55.39 ? C8 SAH 3002 B 1 
HETATM 19 N N7 SAH . . . E 2 32.819 51.447 -37.198 1 57.46 ? N7 SAH 3002 B 1 
HETATM 20 C C5 SAH . . . E 2 32 50.341 -37.053 1 57.95 ? C5 SAH 3002 B 1 
HETATM 21 C C6 SAH . . . E 2 31.519 49.447 -38.045 1 59.51 ? C6 SAH 3002 B 1 
HETATM 22 N N6 SAH . . . E 2 31.796 49.558 -39.35 1 60.1 ? N6 SAH 3002 B 1 
HETATM 23 N N1 SAH . . . E 2 30.734 48.413 -37.626 1 58.06 ? N1 SAH 3002 B 1 
HETATM 24 C C2 SAH . . . E 2 30.463 48.309 -36.299 1 57.7 ? C2 SAH 3002 B 1 
HETATM 25 N N3 SAH . . . E 2 30.872 49.105 -35.28 1 57.26 ? N3 SAH 3002 B 1 
HETATM 26 C C4 SAH . . . E 2 31.65 50.112 -35.736 1 56.58 ? C4 SAH 3002 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#