data_2OO5
#
_model_server_result.job_id            a6B1ja4nZkrmOphR4elF8Q 
_model_server_result.datetime_utc      '2024-11-08 13:32:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2oo5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":400}' 
#
_entry.id    2OO5 
#
_exptl.entry_id    2OO5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OO5 
_cell.length_a            71.199 
_cell.length_b            101.025 
_cell.length_c            131.721 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OO5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     2OO5 
_atom_sites.fract_transf_matrix[1][1]    0.014045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SO4 A 1 385 103 SO4 SO4 . 
E 3 SO4 A 1 386 104 SO4 SO4 . 
F 4 TXD A 1 500 500 TXD TXD . 
G 3 SO4 B 1 385 101 SO4 SO4 . 
H 3 SO4 B 1 386 102 SO4 SO4 . 
I 4 TXD B 1 600 600 TXD TXD . 
J 5 NAP C 1 400 400 NAP NAP . 
K 6 HOH A 1 501 4 HOH HOH . 
K 6 HOH A 2 502 6 HOH HOH . 
K 6 HOH A 3 503 8 HOH HOH . 
K 6 HOH A 4 504 10 HOH HOH . 
K 6 HOH A 5 505 14 HOH HOH . 
K 6 HOH A 6 506 15 HOH HOH . 
K 6 HOH A 7 507 16 HOH HOH . 
K 6 HOH A 8 508 20 HOH HOH . 
K 6 HOH A 9 509 21 HOH HOH . 
K 6 HOH A 10 510 23 HOH HOH . 
L 6 HOH B 1 601 1 HOH HOH . 
L 6 HOH B 2 602 2 HOH HOH . 
L 6 HOH B 3 603 5 HOH HOH . 
L 6 HOH B 4 604 9 HOH HOH . 
L 6 HOH B 5 605 12 HOH HOH . 
L 6 HOH B 6 606 18 HOH HOH . 
L 6 HOH B 7 607 19 HOH HOH . 
L 6 HOH B 8 608 26 HOH HOH . 
M 6 HOH C 1 3 3 HOH HOH . 
M 6 HOH C 2 7 7 HOH HOH . 
M 6 HOH C 3 11 11 HOH HOH . 
M 6 HOH C 4 13 13 HOH HOH . 
M 6 HOH C 5 17 17 HOH HOH . 
M 6 HOH C 6 22 22 HOH HOH . 
M 6 HOH C 7 24 24 HOH HOH . 
M 6 HOH C 8 25 25 HOH HOH . 
M 6 HOH C 9 27 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . J 5 58.134 59.412 141.953 1 29.47 ? PA NAP 400 C 1 
HETATM 2 O O1A NAP . . . J 5 59.548 59.121 142.272 1 29.89 ? O1A NAP 400 C 1 
HETATM 3 O O2A NAP . . . J 5 57.242 58.329 142.414 1 28.3 ? O2A NAP 400 C 1 
HETATM 4 O O5B NAP . . . J 5 57.751 60.801 142.642 1 29.51 ? O5B NAP 400 C 1 
HETATM 5 C C5B NAP . . . J 5 56.528 61.417 142.352 1 30.37 ? C5B NAP 400 C 1 
HETATM 6 C C4B NAP . . . J 5 56.447 62.628 143.26 1 31.47 ? C4B NAP 400 C 1 
HETATM 7 O O4B NAP . . . J 5 55.396 63.477 142.852 1 31.27 ? O4B NAP 400 C 1 
HETATM 8 C C3B NAP . . . J 5 56.193 62.219 144.705 1 32.04 ? C3B NAP 400 C 1 
HETATM 9 O O3B NAP . . . J 5 57.32 62.503 145.505 1 32.49 ? O3B NAP 400 C 1 
HETATM 10 C C2B NAP . . . J 5 54.981 63.023 145.122 1 31.88 ? C2B NAP 400 C 1 
HETATM 11 O O2B NAP . . . J 5 55.241 63.677 146.34 1 32.4 ? O2B NAP 400 C 1 
HETATM 12 C C1B NAP . . . J 5 54.754 64.017 143.985 1 31.33 ? C1B NAP 400 C 1 
HETATM 13 N N9A NAP . . . J 5 53.336 64.28 143.66 1 31.11 ? N9A NAP 400 C 1 
HETATM 14 C C8A NAP . . . J 5 52.326 63.369 143.47 1 30.8 ? C8A NAP 400 C 1 
HETATM 15 N N7A NAP . . . J 5 51.19 64.04 143.177 1 30.57 ? N7A NAP 400 C 1 
HETATM 16 C C5A NAP . . . J 5 51.457 65.364 143.168 1 30.97 ? C5A NAP 400 C 1 
HETATM 17 C C6A NAP . . . J 5 50.667 66.489 142.939 1 31.12 ? C6A NAP 400 C 1 
HETATM 18 N N6A NAP . . . J 5 49.396 66.372 142.572 1 30.19 ? N6A NAP 400 C 1 
HETATM 19 N N1A NAP . . . J 5 51.243 67.74 143.009 1 31 ? N1A NAP 400 C 1 
HETATM 20 C C2A NAP . . . J 5 52.585 67.882 143.304 1 30.6 ? C2A NAP 400 C 1 
HETATM 21 N N3A NAP . . . J 5 53.356 66.762 143.531 1 29.74 ? N3A NAP 400 C 1 
HETATM 22 C C4A NAP . . . J 5 52.805 65.527 143.467 1 30.63 ? C4A NAP 400 C 1 
HETATM 23 O O3 NAP . . . J 5 57.919 59.727 140.389 1 27.55 ? O3 NAP 400 C 1 
HETATM 24 P PN NAP . . . J 5 59.108 59.929 139.319 1 25.7 ? PN NAP 400 C 1 
HETATM 25 O O1N NAP . . . J 5 60.145 60.849 139.848 1 25.99 ? O1N NAP 400 C 1 
HETATM 26 O O2N NAP . . . J 5 58.443 60.219 138.028 1 25.61 ? O2N NAP 400 C 1 
HETATM 27 O O5D NAP . . . J 5 59.76 58.47 139.244 1 24.14 ? O5D NAP 400 C 1 
HETATM 28 C C5D NAP . . . J 5 58.998 57.385 138.786 1 24.49 ? C5D NAP 400 C 1 
HETATM 29 C C4D NAP . . . J 5 59.048 56.228 139.773 1 23.65 ? C4D NAP 400 C 1 
HETATM 30 O O4D NAP . . . J 5 57.991 55.343 139.461 1 23.21 ? O4D NAP 400 C 1 
HETATM 31 C C3D NAP . . . J 5 60.332 55.433 139.66 1 23 ? C3D NAP 400 C 1 
HETATM 32 O O3D NAP . . . J 5 60.667 54.857 140.902 1 24.17 ? O3D NAP 400 C 1 
HETATM 33 C C2D NAP . . . J 5 59.963 54.375 138.656 1 22.98 ? C2D NAP 400 C 1 
HETATM 34 O O2D NAP . . . J 5 60.715 53.198 138.755 1 22.6 ? O2D NAP 400 C 1 
HETATM 35 C C1D NAP . . . J 5 58.506 54.104 139.008 1 22.9 ? C1D NAP 400 C 1 
HETATM 36 N N1N NAP . . . J 5 57.648 53.502 137.95 1 22.73 ? N1N NAP 400 C 1 
HETATM 37 C C2N NAP . . . J 5 57.822 53.74 136.61 1 22.02 ? C2N NAP 400 C 1 
HETATM 38 C C3N NAP . . . J 5 56.988 53.159 135.668 1 22.73 ? C3N NAP 400 C 1 
HETATM 39 C C7N NAP . . . J 5 57.304 53.357 134.219 1 22.05 ? C7N NAP 400 C 1 
HETATM 40 O O7N NAP . . . J 5 57.207 52.271 133.339 1 22.83 ? O7N NAP 400 C 1 
HETATM 41 N N7N NAP . . . J 5 57.684 54.551 133.787 1 21.87 ? N7N NAP 400 C 1 
HETATM 42 C C4N NAP . . . J 5 55.959 52.315 136.07 1 21.98 ? C4N NAP 400 C 1 
HETATM 43 C C5N NAP . . . J 5 55.775 52.082 137.426 1 22.07 ? C5N NAP 400 C 1 
HETATM 44 C C6N NAP . . . J 5 56.625 52.68 138.355 1 22.19 ? C6N NAP 400 C 1 
HETATM 45 P P2B NAP . . . J 5 54.03 64.145 147.28 1 30.84 ? P2B NAP 400 C 1 
HETATM 46 O O1X NAP . . . J 5 54.623 64.72 148.543 1 31.57 ? O1X NAP 400 C 1 
HETATM 47 O O2X NAP . . . J 5 53.265 65.213 146.56 1 29.81 ? O2X NAP 400 C 1 
HETATM 48 O O3X NAP . . . J 5 53.156 62.951 147.58 1 30.61 ? O3X NAP 400 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#