data_2OO5 # _model_server_result.job_id yurNtI9vLYQc9NdhHQp9xw _model_server_result.datetime_utc '2024-11-24 07:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 2OO5 # _exptl.entry_id 2OO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.457 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OO5 _cell.length_a 71.199 _cell.length_b 101.025 _cell.length_c 131.721 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # _chem_comp.formula 'C21 H31 N7 O14 P2' _chem_comp.formula_weight 667.457 _chem_comp.id TXD _chem_comp.mon_nstd_flag n _chem_comp.name '1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7N C7N TXD doub 418 n n C7N C3N TXD sing 419 n n C7N N7N TXD sing 420 n n N7N H7N1 TXD sing 421 n n N7N H7N2 TXD sing 422 n n C3N C4N TXD sing 423 n n C3N C2N TXD sing 424 n n C3N H3N TXD sing 425 n n C2N N1N TXD sing 426 n n C2N H2N1 TXD sing 427 n n C2N H2N2 TXD sing 428 n n C4N C5N TXD doub 429 n n C4N H4N TXD sing 430 n n C5N C6N TXD sing 431 n n C5N H5N TXD sing 432 n n C6N N1N TXD sing 433 n n C6N H6N1 TXD sing 434 n n C6N H6N2 TXD sing 435 n n N1N "C1'A" TXD sing 436 n n "C1'A" "O4'A" TXD sing 437 n n "C1'A" "C2'A" TXD sing 438 n n "C1'A" "H1'A" TXD sing 439 n n "O4'A" "C4'A" TXD sing 440 n n "C2'A" "C3'A" TXD sing 441 n n "C2'A" "O2'A" TXD sing 442 n n "C2'A" "H2'A" TXD sing 443 n n "O2'A" HO2A TXD sing 444 n n "C3'A" "C4'A" TXD sing 445 n n "C3'A" "O3'A" TXD sing 446 n n "C3'A" "H3'A" TXD sing 447 n n "O3'A" HO3A TXD sing 448 n n "C4'A" "C5'A" TXD sing 449 n n "C4'A" "H4'A" TXD sing 450 n n "C5'A" "O5'A" TXD sing 451 n n "C5'A" "H5'1" TXD sing 452 n n "C5'A" "H5'2" TXD sing 453 n n "O5'A" PN TXD sing 454 n n PN O1N TXD doub 455 n n PN O2N TXD sing 456 n n PN O3 TXD sing 457 n n O2N HO2N TXD sing 458 n n O3 PA TXD sing 459 n n PA O1P TXD doub 460 n n PA O5' TXD sing 461 n n PA O2P TXD sing 462 n n O2P HO2P TXD sing 463 n n O5' C5' TXD sing 464 n n C5' C4' TXD sing 465 n n C5' "H5'A" TXD sing 466 n n C5' "H5'B" TXD sing 467 n n C4' O4' TXD sing 468 n n C4' C3' TXD sing 469 n n C4' H4' TXD sing 470 n n C3' O3' TXD sing 471 n n C3' C2' TXD sing 472 n n C3' H3' TXD sing 473 n n O3' HO3' TXD sing 474 n n C2' C1' TXD sing 475 n n C2' O2' TXD sing 476 n n C2' H2' TXD sing 477 n n O2' HO2' TXD sing 478 n n C1' O4' TXD sing 479 n n C1' N9A TXD sing 480 n n C1' H1' TXD sing 481 n n N9A C4A TXD sing 482 n y N9A C8A TXD sing 483 n y C4A N3A TXD sing 484 n y C4A C5A TXD doub 485 n y N3A C2A TXD doub 486 n y C2A N1A TXD sing 487 n y C2A H2A TXD sing 488 n n N1A C6A TXD doub 489 n y C6A C5A TXD sing 490 n y C6A N6A TXD sing 491 n n N6A H6A1 TXD sing 492 n n N6A H6A2 TXD sing 493 n n C5A N7A TXD sing 494 n y N7A C8A TXD doub 495 n y C8A H8A TXD sing 496 n n # _atom_sites.entry_id 2OO5 _atom_sites.fract_transf_matrix[1][1] 0.014045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SO4 A 1 385 103 SO4 SO4 . E 3 SO4 A 1 386 104 SO4 SO4 . F 4 TXD A 1 500 500 TXD TXD . G 3 SO4 B 1 385 101 SO4 SO4 . H 3 SO4 B 1 386 102 SO4 SO4 . I 4 TXD B 1 600 600 TXD TXD . J 5 NAP C 1 400 400 NAP NAP . K 6 HOH A 1 501 4 HOH HOH . K 6 HOH A 2 502 6 HOH HOH . K 6 HOH A 3 503 8 HOH HOH . K 6 HOH A 4 504 10 HOH HOH . K 6 HOH A 5 505 14 HOH HOH . K 6 HOH A 6 506 15 HOH HOH . K 6 HOH A 7 507 16 HOH HOH . K 6 HOH A 8 508 20 HOH HOH . K 6 HOH A 9 509 21 HOH HOH . K 6 HOH A 10 510 23 HOH HOH . L 6 HOH B 1 601 1 HOH HOH . L 6 HOH B 2 602 2 HOH HOH . L 6 HOH B 3 603 5 HOH HOH . L 6 HOH B 4 604 9 HOH HOH . L 6 HOH B 5 605 12 HOH HOH . L 6 HOH B 6 606 18 HOH HOH . L 6 HOH B 7 607 19 HOH HOH . L 6 HOH B 8 608 26 HOH HOH . M 6 HOH C 1 3 3 HOH HOH . M 6 HOH C 2 7 7 HOH HOH . M 6 HOH C 3 11 11 HOH HOH . M 6 HOH C 4 13 13 HOH HOH . M 6 HOH C 5 17 17 HOH HOH . M 6 HOH C 6 22 22 HOH HOH . M 6 HOH C 7 24 24 HOH HOH . M 6 HOH C 8 25 25 HOH HOH . M 6 HOH C 9 27 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7N TXD . . . F 4 33.733 76.456 99.676 1 34.1 ? O7N TXD 500 A 1 HETATM 2 C C7N TXD . . . F 4 33.58 75.342 99.197 1 35.01 ? C7N TXD 500 A 1 HETATM 3 N N7N TXD . . . F 4 32.418 74.964 98.68 1 34.87 ? N7N TXD 500 A 1 HETATM 4 C C3N TXD . . . F 4 34.7 74.344 99.201 1 34.77 ? C3N TXD 500 A 1 HETATM 5 C C2N TXD . . . F 4 36.017 74.769 99.348 1 34.95 ? C2N TXD 500 A 1 HETATM 6 C C4N TXD . . . F 4 34.363 72.876 99.056 1 35.12 ? C4N TXD 500 A 1 HETATM 7 C C5N TXD . . . F 4 35.555 72.035 99.081 1 35.23 ? C5N TXD 500 A 1 HETATM 8 C C6N TXD . . . F 4 36.829 72.572 99.227 1 35.15 ? C6N TXD 500 A 1 HETATM 9 N N1N TXD . . . F 4 37.041 73.897 99.363 1 35.57 ? N1N TXD 500 A 1 HETATM 10 C "C1'A" TXD . . . F 4 38.408 74.426 99.516 1 35.2 ? "C1'A" TXD 500 A 1 HETATM 11 O "O4'A" TXD . . . F 4 39.237 74.098 98.4 1 35.34 ? "O4'A" TXD 500 A 1 HETATM 12 C "C2'A" TXD . . . F 4 39.132 73.889 100.74 1 35.52 ? "C2'A" TXD 500 A 1 HETATM 13 O "O2'A" TXD . . . F 4 38.768 74.624 101.91 1 37.03 ? "O2'A" TXD 500 A 1 HETATM 14 C "C3'A" TXD . . . F 4 40.581 74.059 100.344 1 35.36 ? "C3'A" TXD 500 A 1 HETATM 15 O "O3'A" TXD . . . F 4 41.038 75.373 100.678 1 34.49 ? "O3'A" TXD 500 A 1 HETATM 16 C "C4'A" TXD . . . F 4 40.585 73.898 98.833 1 35.18 ? "C4'A" TXD 500 A 1 HETATM 17 C "C5'A" TXD . . . F 4 41.05 72.538 98.332 1 35.39 ? "C5'A" TXD 500 A 1 HETATM 18 O "O5'A" TXD . . . F 4 40.208 71.52 98.868 1 35.83 ? "O5'A" TXD 500 A 1 HETATM 19 P PN TXD . . . F 4 39.985 70.083 98.18 1 34.93 ? PN TXD 500 A 1 HETATM 20 O O1N TXD . . . F 4 40.1 69.048 99.274 1 36.46 ? O1N TXD 500 A 1 HETATM 21 O O2N TXD . . . F 4 38.724 70.162 97.353 1 35.82 ? O2N TXD 500 A 1 HETATM 22 O O3 TXD . . . F 4 41.253 69.93 97.204 1 35.41 ? O3 TXD 500 A 1 HETATM 23 P PA TXD . . . F 4 41.452 68.701 96.177 1 35.49 ? PA TXD 500 A 1 HETATM 24 O O2P TXD . . . F 4 41.068 69.193 94.804 1 37.02 ? O2P TXD 500 A 1 HETATM 25 O O1P TXD . . . F 4 40.792 67.452 96.718 1 34.56 ? O1P TXD 500 A 1 HETATM 26 O O5' TXD . . . F 4 43.053 68.51 96.175 1 34.36 ? O5' TXD 500 A 1 HETATM 27 C C5' TXD . . . F 4 43.81 68.479 97.383 1 34.89 ? C5' TXD 500 A 1 HETATM 28 C C4' TXD . . . F 4 44.939 69.509 97.412 1 36.25 ? C4' TXD 500 A 1 HETATM 29 C C3' TXD . . . F 4 44.576 70.927 96.969 1 36.93 ? C3' TXD 500 A 1 HETATM 30 O O3' TXD . . . F 4 44.628 71.797 98.1 1 36.22 ? O3' TXD 500 A 1 HETATM 31 C C2' TXD . . . F 4 45.618 71.311 95.927 1 37.39 ? C2' TXD 500 A 1 HETATM 32 O O2' TXD . . . F 4 46.125 72.634 96.124 1 38.71 ? O2' TXD 500 A 1 HETATM 33 C C1' TXD . . . F 4 46.712 70.264 96.11 1 37.43 ? C1' TXD 500 A 1 HETATM 34 O O4' TXD . . . F 4 46.022 69.099 96.568 1 36.7 ? O4' TXD 500 A 1 HETATM 35 N N9A TXD . . . F 4 47.523 69.976 94.892 1 37.81 ? N9A TXD 500 A 1 HETATM 36 C C4A TXD . . . F 4 48.856 69.887 94.872 1 37.43 ? C4A TXD 500 A 1 HETATM 37 N N3A TXD . . . F 4 49.808 70.026 95.83 1 37.44 ? N3A TXD 500 A 1 HETATM 38 C C2A TXD . . . F 4 51.117 69.888 95.55 1 37.69 ? C2A TXD 500 A 1 HETATM 39 N N1A TXD . . . F 4 51.549 69.61 94.305 1 37.98 ? N1A TXD 500 A 1 HETATM 40 C C6A TXD . . . F 4 50.678 69.453 93.283 1 37.5 ? C6A TXD 500 A 1 HETATM 41 N N6A TXD . . . F 4 51.101 69.176 92.03 1 37.61 ? N6A TXD 500 A 1 HETATM 42 C C5A TXD . . . F 4 49.233 69.596 93.572 1 37.37 ? C5A TXD 500 A 1 HETATM 43 N N7A TXD . . . F 4 48.122 69.511 92.823 1 37.17 ? N7A TXD 500 A 1 HETATM 44 C C8A TXD . . . F 4 47.075 69.74 93.645 1 37.75 ? C8A TXD 500 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #