data_2OO5
#
_model_server_result.job_id            jglX6wfVxWA6NNxh89t42A 
_model_server_result.datetime_utc      '2024-11-08 13:48:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2oo5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":600}' 
#
_entry.id    2OO5 
#
_exptl.entry_id    2OO5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              667.457 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OO5 
_cell.length_a            71.199 
_cell.length_b            101.025 
_cell.length_c            131.721 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OO5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
_chem_comp.formula           'C21 H31 N7 O14 P2' 
_chem_comp.formula_weight    667.457 
_chem_comp.id                TXD 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O7N C7N TXD doub 418 n n 
C7N C3N TXD sing 419 n n 
C7N N7N TXD sing 420 n n 
N7N H7N1 TXD sing 421 n n 
N7N H7N2 TXD sing 422 n n 
C3N C4N TXD sing 423 n n 
C3N C2N TXD sing 424 n n 
C3N H3N TXD sing 425 n n 
C2N N1N TXD sing 426 n n 
C2N H2N1 TXD sing 427 n n 
C2N H2N2 TXD sing 428 n n 
C4N C5N TXD doub 429 n n 
C4N H4N TXD sing 430 n n 
C5N C6N TXD sing 431 n n 
C5N H5N TXD sing 432 n n 
C6N N1N TXD sing 433 n n 
C6N H6N1 TXD sing 434 n n 
C6N H6N2 TXD sing 435 n n 
N1N "C1'A" TXD sing 436 n n 
"C1'A" "O4'A" TXD sing 437 n n 
"C1'A" "C2'A" TXD sing 438 n n 
"C1'A" "H1'A" TXD sing 439 n n 
"O4'A" "C4'A" TXD sing 440 n n 
"C2'A" "C3'A" TXD sing 441 n n 
"C2'A" "O2'A" TXD sing 442 n n 
"C2'A" "H2'A" TXD sing 443 n n 
"O2'A" HO2A TXD sing 444 n n 
"C3'A" "C4'A" TXD sing 445 n n 
"C3'A" "O3'A" TXD sing 446 n n 
"C3'A" "H3'A" TXD sing 447 n n 
"O3'A" HO3A TXD sing 448 n n 
"C4'A" "C5'A" TXD sing 449 n n 
"C4'A" "H4'A" TXD sing 450 n n 
"C5'A" "O5'A" TXD sing 451 n n 
"C5'A" "H5'1" TXD sing 452 n n 
"C5'A" "H5'2" TXD sing 453 n n 
"O5'A" PN TXD sing 454 n n 
PN O1N TXD doub 455 n n 
PN O2N TXD sing 456 n n 
PN O3 TXD sing 457 n n 
O2N HO2N TXD sing 458 n n 
O3 PA TXD sing 459 n n 
PA O1P TXD doub 460 n n 
PA O5' TXD sing 461 n n 
PA O2P TXD sing 462 n n 
O2P HO2P TXD sing 463 n n 
O5' C5' TXD sing 464 n n 
C5' C4' TXD sing 465 n n 
C5' "H5'A" TXD sing 466 n n 
C5' "H5'B" TXD sing 467 n n 
C4' O4' TXD sing 468 n n 
C4' C3' TXD sing 469 n n 
C4' H4' TXD sing 470 n n 
C3' O3' TXD sing 471 n n 
C3' C2' TXD sing 472 n n 
C3' H3' TXD sing 473 n n 
O3' HO3' TXD sing 474 n n 
C2' C1' TXD sing 475 n n 
C2' O2' TXD sing 476 n n 
C2' H2' TXD sing 477 n n 
O2' HO2' TXD sing 478 n n 
C1' O4' TXD sing 479 n n 
C1' N9A TXD sing 480 n n 
C1' H1' TXD sing 481 n n 
N9A C4A TXD sing 482 n y 
N9A C8A TXD sing 483 n y 
C4A N3A TXD sing 484 n y 
C4A C5A TXD doub 485 n y 
N3A C2A TXD doub 486 n y 
C2A N1A TXD sing 487 n y 
C2A H2A TXD sing 488 n n 
N1A C6A TXD doub 489 n y 
C6A C5A TXD sing 490 n y 
C6A N6A TXD sing 491 n n 
N6A H6A1 TXD sing 492 n n 
N6A H6A2 TXD sing 493 n n 
C5A N7A TXD sing 494 n y 
N7A C8A TXD doub 495 n y 
C8A H8A TXD sing 496 n n 
#
_atom_sites.entry_id                     2OO5 
_atom_sites.fract_transf_matrix[1][1]    0.014045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SO4 A 1 385 103 SO4 SO4 . 
E 3 SO4 A 1 386 104 SO4 SO4 . 
F 4 TXD A 1 500 500 TXD TXD . 
G 3 SO4 B 1 385 101 SO4 SO4 . 
H 3 SO4 B 1 386 102 SO4 SO4 . 
I 4 TXD B 1 600 600 TXD TXD . 
J 5 NAP C 1 400 400 NAP NAP . 
K 6 HOH A 1 501 4 HOH HOH . 
K 6 HOH A 2 502 6 HOH HOH . 
K 6 HOH A 3 503 8 HOH HOH . 
K 6 HOH A 4 504 10 HOH HOH . 
K 6 HOH A 5 505 14 HOH HOH . 
K 6 HOH A 6 506 15 HOH HOH . 
K 6 HOH A 7 507 16 HOH HOH . 
K 6 HOH A 8 508 20 HOH HOH . 
K 6 HOH A 9 509 21 HOH HOH . 
K 6 HOH A 10 510 23 HOH HOH . 
L 6 HOH B 1 601 1 HOH HOH . 
L 6 HOH B 2 602 2 HOH HOH . 
L 6 HOH B 3 603 5 HOH HOH . 
L 6 HOH B 4 604 9 HOH HOH . 
L 6 HOH B 5 605 12 HOH HOH . 
L 6 HOH B 6 606 18 HOH HOH . 
L 6 HOH B 7 607 19 HOH HOH . 
L 6 HOH B 8 608 26 HOH HOH . 
M 6 HOH C 1 3 3 HOH HOH . 
M 6 HOH C 2 7 7 HOH HOH . 
M 6 HOH C 3 11 11 HOH HOH . 
M 6 HOH C 4 13 13 HOH HOH . 
M 6 HOH C 5 17 17 HOH HOH . 
M 6 HOH C 6 22 22 HOH HOH . 
M 6 HOH C 7 24 24 HOH HOH . 
M 6 HOH C 8 25 25 HOH HOH . 
M 6 HOH C 9 27 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O7N TXD . . . I 4 59.519 51.083 137.146 1 32.38 ? O7N TXD 600 B 1 
HETATM 2 C C7N TXD . . . I 4 58.883 50.245 137.769 1 31.2 ? C7N TXD 600 B 1 
HETATM 3 N N7N TXD . . . I 4 59.159 49.995 139.047 1 32.03 ? N7N TXD 600 B 1 
HETATM 4 C C3N TXD . . . I 4 57.771 49.498 137.074 1 31.17 ? C3N TXD 600 B 1 
HETATM 5 C C2N TXD . . . I 4 56.756 48.862 137.781 1 30.62 ? C2N TXD 600 B 1 
HETATM 6 C C4N TXD . . . I 4 57.766 49.445 135.567 1 31.29 ? C4N TXD 600 B 1 
HETATM 7 C C5N TXD . . . I 4 56.653 48.715 134.998 1 31.08 ? C5N TXD 600 B 1 
HETATM 8 C C6N TXD . . . I 4 55.709 48.117 135.808 1 30.87 ? C6N TXD 600 B 1 
HETATM 9 N N1N TXD . . . I 4 55.769 48.201 137.143 1 30.31 ? N1N TXD 600 B 1 
HETATM 10 C "C1'A" TXD . . . I 4 54.718 47.544 137.92 1 29.44 ? "C1'A" TXD 600 B 1 
HETATM 11 O "O4'A" TXD . . . I 4 54.602 46.161 137.584 1 28.56 ? "O4'A" TXD 600 B 1 
HETATM 12 C "C2'A" TXD . . . I 4 53.332 48.116 137.663 1 27.75 ? "C2'A" TXD 600 B 1 
HETATM 13 O "O2'A" TXD . . . I 4 53.142 49.377 138.301 1 26.48 ? "O2'A" TXD 600 B 1 
HETATM 14 C "C3'A" TXD . . . I 4 52.467 47 138.206 1 28.13 ? "C3'A" TXD 600 B 1 
HETATM 15 O "O3'A" TXD . . . I 4 52.244 47.173 139.608 1 27.37 ? "O3'A" TXD 600 B 1 
HETATM 16 C "C4'A" TXD . . . I 4 53.284 45.732 137.953 1 28.18 ? "C4'A" TXD 600 B 1 
HETATM 17 C "C5'A" TXD . . . I 4 52.692 44.815 136.88 1 27.32 ? "C5'A" TXD 600 B 1 
HETATM 18 O "O5'A" TXD . . . I 4 52.467 45.503 135.649 1 26.07 ? "O5'A" TXD 600 B 1 
HETATM 19 P PN TXD . . . I 4 51.928 44.72 134.34 1 25.23 ? PN TXD 600 B 1 
HETATM 20 O O1N TXD . . . I 4 51.69 45.746 133.264 1 26.91 ? O1N TXD 600 B 1 
HETATM 21 O O2N TXD . . . I 4 52.815 43.542 134.05 1 23.7 ? O2N TXD 600 B 1 
HETATM 22 O O3 TXD . . . I 4 50.506 44.123 134.796 1 23.56 ? O3 TXD 600 B 1 
HETATM 23 P PA TXD . . . I 4 49.932 42.761 134.15 1 22.37 ? PA TXD 600 B 1 
HETATM 24 O O2P TXD . . . I 4 50.261 41.614 135.075 1 23.5 ? O2P TXD 600 B 1 
HETATM 25 O O1P TXD . . . I 4 50.33 42.672 132.698 1 21.56 ? O1P TXD 600 B 1 
HETATM 26 O O5' TXD . . . I 4 48.343 43.002 134.212 1 24.05 ? O5' TXD 600 B 1 
HETATM 27 C C5' TXD . . . I 4 47.781 44.19 133.661 1 24.8 ? C5' TXD 600 B 1 
HETATM 28 C C4' TXD . . . I 4 46.816 44.834 134.643 1 25.07 ? C4' TXD 600 B 1 
HETATM 29 C C3' TXD . . . I 4 47.373 45.069 136.046 1 25.26 ? C3' TXD 600 B 1 
HETATM 30 O O3' TXD . . . I 4 47.429 46.476 136.299 1 25.1 ? O3' TXD 600 B 1 
HETATM 31 C C2' TXD . . . I 4 46.399 44.363 136.972 1 25.59 ? C2' TXD 600 B 1 
HETATM 32 O O2' TXD . . . I 4 46.112 45.113 138.15 1 25.94 ? O2' TXD 600 B 1 
HETATM 33 C C1' TXD . . . I 4 45.16 44.219 136.104 1 26.47 ? C1' TXD 600 B 1 
HETATM 34 O O4' TXD . . . I 4 45.674 43.997 134.799 1 24.89 ? O4' TXD 600 B 1 
HETATM 35 N N9A TXD . . . I 4 44.228 43.135 136.499 1 26.76 ? N9A TXD 600 B 1 
HETATM 36 C C4A TXD . . . I 4 42.906 43.289 136.579 1 26.9 ? C4A TXD 600 B 1 
HETATM 37 N N3A TXD . . . I 4 42.081 44.349 136.363 1 26.75 ? N3A TXD 600 B 1 
HETATM 38 C C2A TXD . . . I 4 40.747 44.239 136.521 1 26.95 ? C2A TXD 600 B 1 
HETATM 39 N N1A TXD . . . I 4 40.168 43.078 136.886 1 27.05 ? N1A TXD 600 B 1 
HETATM 40 C C6A TXD . . . I 4 40.91 41.97 137.125 1 27.06 ? C6A TXD 600 B 1 
HETATM 41 N N6A TXD . . . I 4 40.339 40.798 137.499 1 26.71 ? N6A TXD 600 B 1 
HETATM 42 C C5A TXD . . . I 4 42.38 42.07 136.96 1 26.75 ? C5A TXD 600 B 1 
HETATM 43 N N7A TXD . . . I 4 43.399 41.203 137.096 1 27.09 ? N7A TXD 600 B 1 
HETATM 44 C C8A TXD . . . I 4 44.533 41.868 136.806 1 26.72 ? C8A TXD 600 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           44 
#