data_2OO8 # _model_server_result.job_id 573W0pXHKZM0jwg7oVhYCQ _model_server_result.datetime_utc '2024-12-21 13:16:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2OO8 # _exptl.entry_id 2OO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.575 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[3-(DIMETHYLAMINO)PROPYL]-5-(TRIFLUOROMETHYL)PHENYL}-4-METHYL-3-[(3-PYRIMIDIN-4-YLPYRIDIN-2-YL)AMINO]BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OO8 _cell.length_a 62.604 _cell.length_b 62.604 _cell.length_c 181.043 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H29 F3 N6 O' _chem_comp.formula_weight 534.575 _chem_comp.id RAJ _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[3-(DIMETHYLAMINO)PROPYL]-5-(TRIFLUOROMETHYL)PHENYL}-4-METHYL-3-[(3-PYRIMIDIN-4-YLPYRIDIN-2-YL)AMINO]BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N6 RAJ sing 277 n n C28 H281 RAJ sing 278 n n C28 H282 RAJ sing 279 n n C28 H283 RAJ sing 280 n n N6 C29 RAJ sing 281 n n N6 C27 RAJ sing 282 n n C29 H291 RAJ sing 283 n n C29 H292 RAJ sing 284 n n C29 H293 RAJ sing 285 n n C27 C26 RAJ sing 286 n n C27 H271 RAJ sing 287 n n C27 H272 RAJ sing 288 n n C26 C25 RAJ sing 289 n n C26 H261 RAJ sing 290 n n C26 H262 RAJ sing 291 n n C25 C20 RAJ sing 292 n n C25 H251 RAJ sing 293 n n C25 H252 RAJ sing 294 n n C20 C21 RAJ doub 295 n y C20 C19 RAJ sing 296 n y C19 C18 RAJ doub 297 n y C19 H19 RAJ sing 298 n n C21 C22 RAJ sing 299 n y C21 H21 RAJ sing 300 n n C22 C24 RAJ sing 301 n n C22 C23 RAJ doub 302 n y C24 F1 RAJ sing 303 n n C24 F2 RAJ sing 304 n n C24 F3 RAJ sing 305 n n C23 C18 RAJ sing 306 n y C23 H23 RAJ sing 307 n n C18 N5 RAJ sing 308 n n N5 C17 RAJ sing 309 n n N5 HN5 RAJ sing 310 n n C17 O1 RAJ doub 311 n n C17 C12 RAJ sing 312 n n C12 C13 RAJ doub 313 n y C12 C11 RAJ sing 314 n y C11 C10 RAJ doub 315 n y C11 H11 RAJ sing 316 n n C13 C14 RAJ sing 317 n y C13 H13 RAJ sing 318 n n C14 C15 RAJ doub 319 n y C14 H14 RAJ sing 320 n n C15 C10 RAJ sing 321 n y C15 C16 RAJ sing 322 n n C16 H161 RAJ sing 323 n n C16 H162 RAJ sing 324 n n C16 H163 RAJ sing 325 n n C10 N4 RAJ sing 326 n n N4 C9 RAJ sing 327 n n N4 HN4 RAJ sing 328 n n C9 N3 RAJ doub 329 n y C9 C5 RAJ sing 330 n y N3 C8 RAJ sing 331 n y C8 C7 RAJ doub 332 n y C8 H8 RAJ sing 333 n n C7 C6 RAJ sing 334 n y C7 H7 RAJ sing 335 n n C6 C5 RAJ doub 336 n y C6 H6 RAJ sing 337 n n C5 C3 RAJ sing 338 n y C3 N1 RAJ sing 339 n y C3 C2 RAJ doub 340 n y C2 C1 RAJ sing 341 n y C2 H2 RAJ sing 342 n n C1 N2 RAJ doub 343 n y C1 H1 RAJ sing 344 n n N2 C4 RAJ sing 345 n y C4 N1 RAJ doub 346 n y C4 H4 RAJ sing 347 n n # _atom_sites.entry_id 2OO8 _atom_sites.fract_transf_matrix[1][1] 0.015973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RAJ X 1 1 1 RAJ LIG . C 3 HOH X 1 4 4 HOH HOH . C 3 HOH X 2 5 5 HOH HOH . C 3 HOH X 3 6 6 HOH HOH . C 3 HOH X 4 7 7 HOH HOH . C 3 HOH X 5 8 8 HOH HOH . C 3 HOH X 6 9 9 HOH HOH . C 3 HOH X 7 10 10 HOH HOH . C 3 HOH X 8 11 11 HOH HOH . C 3 HOH X 9 12 12 HOH HOH . C 3 HOH X 10 13 13 HOH HOH . C 3 HOH X 11 14 14 HOH HOH . C 3 HOH X 12 15 15 HOH HOH . C 3 HOH X 13 16 16 HOH HOH . C 3 HOH X 14 17 17 HOH HOH . C 3 HOH X 15 18 18 HOH HOH . C 3 HOH X 16 19 19 HOH HOH . C 3 HOH X 17 20 20 HOH HOH . C 3 HOH X 18 21 21 HOH HOH . C 3 HOH X 19 22 22 HOH HOH . C 3 HOH X 20 23 23 HOH HOH . C 3 HOH X 21 24 24 HOH HOH . C 3 HOH X 22 25 25 HOH HOH . C 3 HOH X 23 26 26 HOH HOH . C 3 HOH X 24 27 27 HOH HOH . C 3 HOH X 25 28 28 HOH HOH . C 3 HOH X 26 29 29 HOH HOH . C 3 HOH X 27 30 30 HOH HOH . C 3 HOH X 28 31 31 HOH HOH . C 3 HOH X 29 32 32 HOH HOH . C 3 HOH X 30 33 33 HOH HOH . C 3 HOH X 31 34 34 HOH HOH . C 3 HOH X 32 35 35 HOH HOH . C 3 HOH X 33 36 36 HOH HOH . C 3 HOH X 34 37 37 HOH HOH . C 3 HOH X 35 38 38 HOH HOH . C 3 HOH X 36 39 39 HOH HOH . C 3 HOH X 37 40 40 HOH HOH . C 3 HOH X 38 41 41 HOH HOH . C 3 HOH X 39 42 42 HOH HOH . C 3 HOH X 40 43 43 HOH HOH . C 3 HOH X 41 44 44 HOH HOH . C 3 HOH X 42 45 45 HOH HOH . C 3 HOH X 43 46 46 HOH HOH . C 3 HOH X 44 47 47 HOH HOH . C 3 HOH X 45 48 48 HOH HOH . C 3 HOH X 46 49 49 HOH HOH . C 3 HOH X 47 50 50 HOH HOH . C 3 HOH X 48 51 51 HOH HOH . C 3 HOH X 49 52 52 HOH HOH . C 3 HOH X 50 53 53 HOH HOH . C 3 HOH X 51 54 54 HOH HOH . C 3 HOH X 52 55 55 HOH HOH . C 3 HOH X 53 56 56 HOH HOH . C 3 HOH X 54 57 57 HOH HOH . C 3 HOH X 55 58 58 HOH HOH . C 3 HOH X 56 59 59 HOH HOH . C 3 HOH X 57 60 60 HOH HOH . C 3 HOH X 58 61 61 HOH HOH . C 3 HOH X 59 62 62 HOH HOH . C 3 HOH X 60 63 63 HOH HOH . C 3 HOH X 61 64 64 HOH HOH . C 3 HOH X 62 65 65 HOH HOH . C 3 HOH X 63 66 66 HOH HOH . C 3 HOH X 64 67 67 HOH HOH . C 3 HOH X 65 68 68 HOH HOH . C 3 HOH X 66 69 69 HOH HOH . C 3 HOH X 67 70 70 HOH HOH . C 3 HOH X 68 71 71 HOH HOH . C 3 HOH X 69 72 72 HOH HOH . C 3 HOH X 70 74 74 HOH HOH . C 3 HOH X 71 75 75 HOH HOH . C 3 HOH X 72 76 76 HOH HOH . C 3 HOH X 73 77 77 HOH HOH . C 3 HOH X 74 78 78 HOH HOH . C 3 HOH X 75 79 79 HOH HOH . C 3 HOH X 76 80 80 HOH HOH . C 3 HOH X 77 81 81 HOH HOH . C 3 HOH X 78 84 84 HOH HOH . C 3 HOH X 79 85 85 HOH HOH . C 3 HOH X 80 86 86 HOH HOH . C 3 HOH X 81 87 87 HOH HOH . C 3 HOH X 82 88 88 HOH HOH . C 3 HOH X 83 89 89 HOH HOH . C 3 HOH X 84 90 90 HOH HOH . C 3 HOH X 85 91 91 HOH HOH . C 3 HOH X 86 92 92 HOH HOH . C 3 HOH X 87 93 93 HOH HOH . C 3 HOH X 88 94 94 HOH HOH . C 3 HOH X 89 95 95 HOH HOH . C 3 HOH X 90 96 96 HOH HOH . C 3 HOH X 91 97 97 HOH HOH . C 3 HOH X 92 98 98 HOH HOH . C 3 HOH X 93 99 99 HOH HOH . C 3 HOH X 94 100 100 HOH HOH . C 3 HOH X 95 101 101 HOH HOH . C 3 HOH X 96 102 102 HOH HOH . C 3 HOH X 97 103 103 HOH HOH . C 3 HOH X 98 104 104 HOH HOH . C 3 HOH X 99 105 105 HOH HOH . C 3 HOH X 100 106 106 HOH HOH . C 3 HOH X 101 107 107 HOH HOH . C 3 HOH X 102 108 108 HOH HOH . C 3 HOH X 103 109 109 HOH HOH . C 3 HOH X 104 110 110 HOH HOH . C 3 HOH X 105 111 111 HOH HOH . C 3 HOH X 106 112 112 HOH HOH . C 3 HOH X 107 113 113 HOH HOH . C 3 HOH X 108 114 114 HOH HOH . C 3 HOH X 109 115 115 HOH HOH . C 3 HOH X 110 116 116 HOH HOH . C 3 HOH X 111 117 117 HOH HOH . C 3 HOH X 112 118 118 HOH HOH . C 3 HOH X 113 119 119 HOH HOH . C 3 HOH X 114 120 120 HOH HOH . C 3 HOH X 115 121 121 HOH HOH . C 3 HOH X 116 122 122 HOH HOH . C 3 HOH X 117 123 123 HOH HOH . C 3 HOH X 118 124 124 HOH HOH . C 3 HOH X 119 125 125 HOH HOH . C 3 HOH X 120 126 126 HOH HOH . C 3 HOH X 121 127 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 RAJ . . . B 2 47.722 4.805 69.194 1 47.77 ? C28 RAJ 1 X 1 HETATM 2 N N6 RAJ . . . B 2 48.131 5.52 67.961 1 46 ? N6 RAJ 1 X 1 HETATM 3 C C29 RAJ . . . B 2 47.322 5.135 66.783 1 48.1 ? C29 RAJ 1 X 1 HETATM 4 C C27 RAJ . . . B 2 49.577 5.354 67.686 1 45.34 ? C27 RAJ 1 X 1 HETATM 5 C C26 RAJ . . . B 2 50.042 3.9 67.508 1 39.91 ? C26 RAJ 1 X 1 HETATM 6 C C25 RAJ . . . B 2 51.459 3.882 66.938 1 37.17 ? C25 RAJ 1 X 1 HETATM 7 C C20 RAJ . . . B 2 52.505 3.647 68.051 1 36.17 ? C20 RAJ 1 X 1 HETATM 8 C C19 RAJ . . . B 2 52.34 2.606 68.978 1 33.82 ? C19 RAJ 1 X 1 HETATM 9 C C21 RAJ . . . B 2 53.612 4.505 68.133 1 35.62 ? C21 RAJ 1 X 1 HETATM 10 C C22 RAJ . . . B 2 54.578 4.307 69.135 1 35.99 ? C22 RAJ 1 X 1 HETATM 11 C C24 RAJ . . . B 2 55.8 5.248 69.245 1 36.81 ? C24 RAJ 1 X 1 HETATM 12 F F2 RAJ . . . B 2 55.429 6.411 69.789 1 35.35 ? F2 RAJ 1 X 1 HETATM 13 F F3 RAJ . . . B 2 56.75 4.674 70.006 1 39.45 ? F3 RAJ 1 X 1 HETATM 14 F F1 RAJ . . . B 2 56.306 5.518 68.037 1 38.35 ? F1 RAJ 1 X 1 HETATM 15 C C23 RAJ . . . B 2 54.408 3.265 70.061 1 35.65 ? C23 RAJ 1 X 1 HETATM 16 C C18 RAJ . . . B 2 53.276 2.415 70.003 1 35.7 ? C18 RAJ 1 X 1 HETATM 17 N N5 RAJ . . . B 2 53.144 1.38 70.859 1 34.78 ? N5 RAJ 1 X 1 HETATM 18 C C17 RAJ . . . B 2 53.619 1.327 72.115 1 33.84 ? C17 RAJ 1 X 1 HETATM 19 O O1 RAJ . . . B 2 54.197 2.252 72.677 1 33.8 ? O1 RAJ 1 X 1 HETATM 20 C C12 RAJ . . . B 2 53.39 0.011 72.886 1 32.66 ? C12 RAJ 1 X 1 HETATM 21 C C11 RAJ . . . B 2 53.613 0.003 74.262 1 31.04 ? C11 RAJ 1 X 1 HETATM 22 C C13 RAJ . . . B 2 53.007 -1.171 72.235 1 32.65 ? C13 RAJ 1 X 1 HETATM 23 C C14 RAJ . . . B 2 52.821 -2.345 72.976 1 32.98 ? C14 RAJ 1 X 1 HETATM 24 C C15 RAJ . . . B 2 53.04 -2.342 74.369 1 33.31 ? C15 RAJ 1 X 1 HETATM 25 C C16 RAJ . . . B 2 52.835 -3.65 75.16 1 34.96 ? C16 RAJ 1 X 1 HETATM 26 C C10 RAJ . . . B 2 53.422 -1.16 75.022 1 32.6 ? C10 RAJ 1 X 1 HETATM 27 N N4 RAJ . . . B 2 53.676 -1.123 76.347 1 32.47 ? N4 RAJ 1 X 1 HETATM 28 C C9 RAJ . . . B 2 52.805 -0.948 77.332 1 31.75 ? C9 RAJ 1 X 1 HETATM 29 N N3 RAJ . . . B 2 51.518 -0.725 77.031 1 33.15 ? N3 RAJ 1 X 1 HETATM 30 C C8 RAJ . . . B 2 50.591 -0.539 77.961 1 33.6 ? C8 RAJ 1 X 1 HETATM 31 C C7 RAJ . . . B 2 50.937 -0.559 79.309 1 34.88 ? C7 RAJ 1 X 1 HETATM 32 C C6 RAJ . . . B 2 52.266 -0.767 79.676 1 34.71 ? C6 RAJ 1 X 1 HETATM 33 C C5 RAJ . . . B 2 53.224 -0.981 78.679 1 33.31 ? C5 RAJ 1 X 1 HETATM 34 C C3 RAJ . . . B 2 54.554 -1.173 79.075 1 31.52 ? C3 RAJ 1 X 1 HETATM 35 C C2 RAJ . . . B 2 54.895 -1.131 80.42 1 32.41 ? C2 RAJ 1 X 1 HETATM 36 C C1 RAJ . . . B 2 56.23 -1.313 80.779 1 33.23 ? C1 RAJ 1 X 1 HETATM 37 N N2 RAJ . . . B 2 57.141 -1.504 79.841 1 33.1 ? N2 RAJ 1 X 1 HETATM 38 C C4 RAJ . . . B 2 56.799 -1.513 78.562 1 32.7 ? C4 RAJ 1 X 1 HETATM 39 N N1 RAJ . . . B 2 55.538 -1.341 78.184 1 32.83 ? N1 RAJ 1 X 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #