data_2OOK # _model_server_result.job_id a6t2qfcxb5VuNCr8Weo3sA _model_server_result.datetime_utc '2024-12-27 01:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ook # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":128}' # _entry.id 2OOK # _exptl.entry_id 2OOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.23 _cell.angle_gamma 90 _cell.entry_id 2OOK _cell.length_a 80.579 _cell.length_b 40.412 _cell.length_c 78.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 3 A ASP 2 1_555 A N MSE 4 A MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 4 A MSE 3 1_555 A N LYS 5 A LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C PRO 40 A PRO 39 1_555 A N MSE 41 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 41 A MSE 40 1_555 A N LEU 42 A LEU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 B C MSE 4 B MSE 3 1_555 B N LYS 5 B LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 B C PRO 40 B PRO 39 1_555 B N MSE 41 B MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 B C MSE 41 B MSE 40 1_555 B N LEU 42 B LEU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 2OOK _atom_sites.fract_transf_matrix[1][1] 0.01241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 127 1 EDO EDO . D 2 EDO A 1 128 2 EDO EDO . E 2 EDO A 1 129 3 EDO EDO . F 2 EDO A 1 130 5 EDO EDO . G 2 EDO B 1 127 4 EDO EDO . H 2 EDO B 1 128 6 EDO EDO . I 3 HOH A 1 131 7 HOH HOH . I 3 HOH A 2 132 8 HOH HOH . I 3 HOH A 3 133 9 HOH HOH . I 3 HOH A 4 134 13 HOH HOH . I 3 HOH A 5 135 15 HOH HOH . I 3 HOH A 6 136 18 HOH HOH . I 3 HOH A 7 137 21 HOH HOH . I 3 HOH A 8 138 23 HOH HOH . I 3 HOH A 9 139 27 HOH HOH . I 3 HOH A 10 140 28 HOH HOH . I 3 HOH A 11 141 31 HOH HOH . I 3 HOH A 12 142 35 HOH HOH . I 3 HOH A 13 143 37 HOH HOH . I 3 HOH A 14 144 38 HOH HOH . I 3 HOH A 15 145 40 HOH HOH . I 3 HOH A 16 146 42 HOH HOH . I 3 HOH A 17 147 43 HOH HOH . I 3 HOH A 18 148 45 HOH HOH . I 3 HOH A 19 149 46 HOH HOH . I 3 HOH A 20 150 48 HOH HOH . I 3 HOH A 21 151 49 HOH HOH . I 3 HOH A 22 152 50 HOH HOH . I 3 HOH A 23 153 52 HOH HOH . I 3 HOH A 24 154 53 HOH HOH . I 3 HOH A 25 155 56 HOH HOH . I 3 HOH A 26 156 57 HOH HOH . I 3 HOH A 27 157 58 HOH HOH . I 3 HOH A 28 158 60 HOH HOH . I 3 HOH A 29 159 61 HOH HOH . I 3 HOH A 30 160 62 HOH HOH . I 3 HOH A 31 161 63 HOH HOH . I 3 HOH A 32 162 65 HOH HOH . I 3 HOH A 33 163 66 HOH HOH . I 3 HOH A 34 164 67 HOH HOH . I 3 HOH A 35 165 72 HOH HOH . I 3 HOH A 36 166 73 HOH HOH . I 3 HOH A 37 167 74 HOH HOH . I 3 HOH A 38 168 76 HOH HOH . I 3 HOH A 39 169 77 HOH HOH . I 3 HOH A 40 170 80 HOH HOH . I 3 HOH A 41 171 82 HOH HOH . I 3 HOH A 42 172 83 HOH HOH . I 3 HOH A 43 173 85 HOH HOH . I 3 HOH A 44 174 87 HOH HOH . I 3 HOH A 45 175 89 HOH HOH . I 3 HOH A 46 176 93 HOH HOH . I 3 HOH A 47 177 94 HOH HOH . I 3 HOH A 48 178 97 HOH HOH . I 3 HOH A 49 179 99 HOH HOH . I 3 HOH A 50 180 100 HOH HOH . I 3 HOH A 51 181 102 HOH HOH . I 3 HOH A 52 182 108 HOH HOH . I 3 HOH A 53 183 110 HOH HOH . I 3 HOH A 54 184 112 HOH HOH . I 3 HOH A 55 185 114 HOH HOH . I 3 HOH A 56 186 115 HOH HOH . I 3 HOH A 57 187 116 HOH HOH . I 3 HOH A 58 188 118 HOH HOH . I 3 HOH A 59 189 119 HOH HOH . I 3 HOH A 60 190 120 HOH HOH . I 3 HOH A 61 191 122 HOH HOH . I 3 HOH A 62 192 126 HOH HOH . I 3 HOH A 63 193 127 HOH HOH . I 3 HOH A 64 194 129 HOH HOH . I 3 HOH A 65 195 130 HOH HOH . I 3 HOH A 66 196 131 HOH HOH . I 3 HOH A 67 197 137 HOH HOH . I 3 HOH A 68 198 138 HOH HOH . I 3 HOH A 69 199 140 HOH HOH . I 3 HOH A 70 200 141 HOH HOH . I 3 HOH A 71 201 142 HOH HOH . I 3 HOH A 72 202 144 HOH HOH . I 3 HOH A 73 203 145 HOH HOH . I 3 HOH A 74 204 147 HOH HOH . I 3 HOH A 75 205 150 HOH HOH . I 3 HOH A 76 206 152 HOH HOH . I 3 HOH A 77 207 154 HOH HOH . I 3 HOH A 78 208 155 HOH HOH . I 3 HOH A 79 209 158 HOH HOH . I 3 HOH A 80 210 159 HOH HOH . I 3 HOH A 81 211 161 HOH HOH . I 3 HOH A 82 212 162 HOH HOH . I 3 HOH A 83 213 163 HOH HOH . I 3 HOH A 84 214 165 HOH HOH . I 3 HOH A 85 215 166 HOH HOH . I 3 HOH A 86 216 167 HOH HOH . I 3 HOH A 87 217 169 HOH HOH . I 3 HOH A 88 218 171 HOH HOH . I 3 HOH A 89 219 172 HOH HOH . I 3 HOH A 90 220 173 HOH HOH . I 3 HOH A 91 221 174 HOH HOH . I 3 HOH A 92 222 177 HOH HOH . I 3 HOH A 93 223 183 HOH HOH . I 3 HOH A 94 224 184 HOH HOH . I 3 HOH A 95 225 185 HOH HOH . I 3 HOH A 96 226 186 HOH HOH . I 3 HOH A 97 227 187 HOH HOH . I 3 HOH A 98 228 193 HOH HOH . I 3 HOH A 99 229 194 HOH HOH . I 3 HOH A 100 230 195 HOH HOH . I 3 HOH A 101 231 196 HOH HOH . I 3 HOH A 102 232 201 HOH HOH . I 3 HOH A 103 233 202 HOH HOH . I 3 HOH A 104 234 205 HOH HOH . I 3 HOH A 105 235 206 HOH HOH . I 3 HOH A 106 236 209 HOH HOH . I 3 HOH A 107 237 211 HOH HOH . I 3 HOH A 108 238 213 HOH HOH . I 3 HOH A 109 239 215 HOH HOH . I 3 HOH A 110 240 217 HOH HOH . I 3 HOH A 111 241 221 HOH HOH . I 3 HOH A 112 242 227 HOH HOH . I 3 HOH A 113 243 228 HOH HOH . J 3 HOH B 1 129 10 HOH HOH . J 3 HOH B 2 130 11 HOH HOH . J 3 HOH B 3 131 12 HOH HOH . J 3 HOH B 4 132 14 HOH HOH . J 3 HOH B 5 133 16 HOH HOH . J 3 HOH B 6 134 17 HOH HOH . J 3 HOH B 7 135 19 HOH HOH . J 3 HOH B 8 136 20 HOH HOH . J 3 HOH B 9 137 22 HOH HOH . J 3 HOH B 10 138 24 HOH HOH . J 3 HOH B 11 139 25 HOH HOH . J 3 HOH B 12 140 26 HOH HOH . J 3 HOH B 13 141 29 HOH HOH . J 3 HOH B 14 142 30 HOH HOH . J 3 HOH B 15 143 32 HOH HOH . J 3 HOH B 16 144 33 HOH HOH . J 3 HOH B 17 145 34 HOH HOH . J 3 HOH B 18 146 36 HOH HOH . J 3 HOH B 19 147 39 HOH HOH . J 3 HOH B 20 148 41 HOH HOH . J 3 HOH B 21 149 44 HOH HOH . J 3 HOH B 22 150 47 HOH HOH . J 3 HOH B 23 151 51 HOH HOH . J 3 HOH B 24 152 54 HOH HOH . J 3 HOH B 25 153 55 HOH HOH . J 3 HOH B 26 154 59 HOH HOH . J 3 HOH B 27 155 64 HOH HOH . J 3 HOH B 28 156 68 HOH HOH . J 3 HOH B 29 157 69 HOH HOH . J 3 HOH B 30 158 70 HOH HOH . J 3 HOH B 31 159 71 HOH HOH . J 3 HOH B 32 160 75 HOH HOH . J 3 HOH B 33 161 78 HOH HOH . J 3 HOH B 34 162 79 HOH HOH . J 3 HOH B 35 163 81 HOH HOH . J 3 HOH B 36 164 84 HOH HOH . J 3 HOH B 37 165 86 HOH HOH . J 3 HOH B 38 166 88 HOH HOH . J 3 HOH B 39 167 90 HOH HOH . J 3 HOH B 40 168 91 HOH HOH . J 3 HOH B 41 169 92 HOH HOH . J 3 HOH B 42 170 95 HOH HOH . J 3 HOH B 43 171 96 HOH HOH . J 3 HOH B 44 172 98 HOH HOH . J 3 HOH B 45 173 101 HOH HOH . J 3 HOH B 46 174 103 HOH HOH . J 3 HOH B 47 175 104 HOH HOH . J 3 HOH B 48 176 105 HOH HOH . J 3 HOH B 49 177 106 HOH HOH . J 3 HOH B 50 178 107 HOH HOH . J 3 HOH B 51 179 109 HOH HOH . J 3 HOH B 52 180 111 HOH HOH . J 3 HOH B 53 181 113 HOH HOH . J 3 HOH B 54 182 117 HOH HOH . J 3 HOH B 55 183 121 HOH HOH . J 3 HOH B 56 184 123 HOH HOH . J 3 HOH B 57 185 124 HOH HOH . J 3 HOH B 58 186 125 HOH HOH . J 3 HOH B 59 187 128 HOH HOH . J 3 HOH B 60 188 132 HOH HOH . J 3 HOH B 61 189 133 HOH HOH . J 3 HOH B 62 190 134 HOH HOH . J 3 HOH B 63 191 135 HOH HOH . J 3 HOH B 64 192 136 HOH HOH . J 3 HOH B 65 193 139 HOH HOH . J 3 HOH B 66 194 143 HOH HOH . J 3 HOH B 67 195 146 HOH HOH . J 3 HOH B 68 196 148 HOH HOH . J 3 HOH B 69 197 149 HOH HOH . J 3 HOH B 70 198 151 HOH HOH . J 3 HOH B 71 199 153 HOH HOH . J 3 HOH B 72 200 156 HOH HOH . J 3 HOH B 73 201 157 HOH HOH . J 3 HOH B 74 202 160 HOH HOH . J 3 HOH B 75 203 164 HOH HOH . J 3 HOH B 76 204 168 HOH HOH . J 3 HOH B 77 205 170 HOH HOH . J 3 HOH B 78 206 175 HOH HOH . J 3 HOH B 79 207 176 HOH HOH . J 3 HOH B 80 208 178 HOH HOH . J 3 HOH B 81 209 179 HOH HOH . J 3 HOH B 82 210 180 HOH HOH . J 3 HOH B 83 211 181 HOH HOH . J 3 HOH B 84 212 182 HOH HOH . J 3 HOH B 85 213 188 HOH HOH . J 3 HOH B 86 214 189 HOH HOH . J 3 HOH B 87 215 190 HOH HOH . J 3 HOH B 88 216 191 HOH HOH . J 3 HOH B 89 217 192 HOH HOH . J 3 HOH B 90 218 197 HOH HOH . J 3 HOH B 91 219 198 HOH HOH . J 3 HOH B 92 220 199 HOH HOH . J 3 HOH B 93 221 200 HOH HOH . J 3 HOH B 94 222 203 HOH HOH . J 3 HOH B 95 223 204 HOH HOH . J 3 HOH B 96 224 207 HOH HOH . J 3 HOH B 97 225 208 HOH HOH . J 3 HOH B 98 226 210 HOH HOH . J 3 HOH B 99 227 212 HOH HOH . J 3 HOH B 100 228 214 HOH HOH . J 3 HOH B 101 229 216 HOH HOH . J 3 HOH B 102 230 218 HOH HOH . J 3 HOH B 103 231 219 HOH HOH . J 3 HOH B 104 232 220 HOH HOH . J 3 HOH B 105 233 222 HOH HOH . J 3 HOH B 106 234 223 HOH HOH . J 3 HOH B 107 235 224 HOH HOH . J 3 HOH B 108 236 225 HOH HOH . J 3 HOH B 109 237 226 HOH HOH . J 3 HOH B 110 238 229 HOH HOH . J 3 HOH B 111 239 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 24.411 21.669 24.792 1 39.02 ? C1 EDO 128 A 1 HETATM 2 O O1 EDO . . . D 2 24.799 21.817 26.161 1 38.02 ? O1 EDO 128 A 1 HETATM 3 C C2 EDO . . . D 2 22.937 22 24.589 1 35.54 ? C2 EDO 128 A 1 HETATM 4 O O2 EDO . . . D 2 22.684 23.386 24.777 1 29.91 ? O2 EDO 128 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #