data_2OOR # _model_server_result.job_id VGrV2zzS8fbA9opH0FRo-w _model_server_result.datetime_utc '2024-11-08 16:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oor # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 2OOR # _exptl.entry_id 2OOR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OOR _cell.length_a 72.194 _cell.length_b 74.451 _cell.length_c 204.844 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OOR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 2OOR _atom_sites.fract_transf_matrix[1][1] 0.013852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 3 NAD B 1 600 600 NAD NAD . F 4 GOL B 1 700 700 GOL GOL . G 5 TXP C 1 400 400 TXP TXP . H 6 HOH A 1 501 3 HOH HOH . H 6 HOH A 2 502 8 HOH HOH . H 6 HOH A 3 503 9 HOH HOH . H 6 HOH A 4 504 11 HOH HOH . H 6 HOH A 5 505 14 HOH HOH . H 6 HOH A 6 506 16 HOH HOH . H 6 HOH A 7 507 19 HOH HOH . H 6 HOH A 8 508 21 HOH HOH . H 6 HOH A 9 509 23 HOH HOH . H 6 HOH A 10 510 28 HOH HOH . H 6 HOH A 11 511 32 HOH HOH . H 6 HOH A 12 512 33 HOH HOH . H 6 HOH A 13 513 37 HOH HOH . H 6 HOH A 14 514 43 HOH HOH . H 6 HOH A 15 515 45 HOH HOH . H 6 HOH A 16 516 49 HOH HOH . H 6 HOH A 17 517 52 HOH HOH . H 6 HOH A 18 518 54 HOH HOH . H 6 HOH A 19 519 62 HOH HOH . H 6 HOH A 20 520 65 HOH HOH . H 6 HOH A 21 521 66 HOH HOH . H 6 HOH A 22 522 68 HOH HOH . H 6 HOH A 23 523 69 HOH HOH . H 6 HOH A 24 524 70 HOH HOH . H 6 HOH A 25 525 72 HOH HOH . H 6 HOH A 26 526 74 HOH HOH . H 6 HOH A 27 527 75 HOH HOH . H 6 HOH A 28 528 77 HOH HOH . H 6 HOH A 29 529 78 HOH HOH . H 6 HOH A 30 530 80 HOH HOH . H 6 HOH A 31 531 83 HOH HOH . H 6 HOH A 32 532 85 HOH HOH . H 6 HOH A 33 533 86 HOH HOH . H 6 HOH A 34 534 87 HOH HOH . H 6 HOH A 35 535 89 HOH HOH . I 6 HOH B 1 701 1 HOH HOH . I 6 HOH B 2 702 2 HOH HOH . I 6 HOH B 3 703 4 HOH HOH . I 6 HOH B 4 704 5 HOH HOH . I 6 HOH B 5 705 6 HOH HOH . I 6 HOH B 6 706 10 HOH HOH . I 6 HOH B 7 707 12 HOH HOH . I 6 HOH B 8 708 13 HOH HOH . I 6 HOH B 9 709 15 HOH HOH . I 6 HOH B 10 710 17 HOH HOH . I 6 HOH B 11 711 18 HOH HOH . I 6 HOH B 12 712 20 HOH HOH . I 6 HOH B 13 713 22 HOH HOH . I 6 HOH B 14 714 24 HOH HOH . I 6 HOH B 15 715 25 HOH HOH . I 6 HOH B 16 716 27 HOH HOH . I 6 HOH B 17 717 29 HOH HOH . I 6 HOH B 18 718 30 HOH HOH . I 6 HOH B 19 719 34 HOH HOH . I 6 HOH B 20 720 35 HOH HOH . I 6 HOH B 21 721 36 HOH HOH . I 6 HOH B 22 722 38 HOH HOH . I 6 HOH B 23 723 39 HOH HOH . I 6 HOH B 24 724 40 HOH HOH . I 6 HOH B 25 725 44 HOH HOH . I 6 HOH B 26 726 46 HOH HOH . I 6 HOH B 27 727 48 HOH HOH . I 6 HOH B 28 728 50 HOH HOH . I 6 HOH B 29 729 53 HOH HOH . I 6 HOH B 30 730 55 HOH HOH . I 6 HOH B 31 731 57 HOH HOH . I 6 HOH B 32 732 58 HOH HOH . I 6 HOH B 33 733 59 HOH HOH . I 6 HOH B 34 734 61 HOH HOH . I 6 HOH B 35 735 63 HOH HOH . I 6 HOH B 36 736 64 HOH HOH . I 6 HOH B 37 737 67 HOH HOH . I 6 HOH B 38 738 73 HOH HOH . I 6 HOH B 39 739 76 HOH HOH . I 6 HOH B 40 740 81 HOH HOH . I 6 HOH B 41 741 82 HOH HOH . I 6 HOH B 42 742 84 HOH HOH . I 6 HOH B 43 743 88 HOH HOH . I 6 HOH B 44 744 90 HOH HOH . I 6 HOH B 45 745 100 HOH HOH . J 6 HOH C 1 401 7 HOH HOH . J 6 HOH C 2 402 26 HOH HOH . J 6 HOH C 3 403 31 HOH HOH . J 6 HOH C 4 404 42 HOH HOH . J 6 HOH C 5 405 47 HOH HOH . J 6 HOH C 6 406 51 HOH HOH . J 6 HOH C 7 407 56 HOH HOH . J 6 HOH C 8 408 60 HOH HOH . J 6 HOH C 9 409 71 HOH HOH . J 6 HOH C 10 410 79 HOH HOH . J 6 HOH C 11 411 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 -16.368 -39.765 25.792 1 77.64 ? PA NAD 600 B 1 HETATM 2 O O1A NAD . . . E 3 -15.801 -39.472 27.123 1 77.93 ? O1A NAD 600 B 1 HETATM 3 O O2A NAD . . . E 3 -16.479 -41.221 25.56 1 77.87 ? O2A NAD 600 B 1 HETATM 4 O O5B NAD . . . E 3 -15.397 -39.093 24.708 1 77.47 ? O5B NAD 600 B 1 HETATM 5 C C5B NAD . . . E 3 -14.022 -39.34 24.87 1 76.74 ? C5B NAD 600 B 1 HETATM 6 C C4B NAD . . . E 3 -13.285 -39.362 23.544 1 76.83 ? C4B NAD 600 B 1 HETATM 7 O O4B NAD . . . E 3 -11.934 -39.679 23.827 1 77.2 ? O4B NAD 600 B 1 HETATM 8 C C3B NAD . . . E 3 -13.818 -40.418 22.58 1 76.87 ? C3B NAD 600 B 1 HETATM 9 O O3B NAD . . . E 3 -14.055 -39.849 21.311 1 76.17 ? O3B NAD 600 B 1 HETATM 10 C C2B NAD . . . E 3 -12.739 -41.482 22.531 1 77.08 ? C2B NAD 600 B 1 HETATM 11 O O2B NAD . . . E 3 -12.54 -41.993 21.234 1 76.81 ? O2B NAD 600 B 1 HETATM 12 C C1B NAD . . . E 3 -11.491 -40.764 23.035 1 77.56 ? C1B NAD 600 B 1 HETATM 13 N N9A NAD . . . E 3 -10.54 -41.642 23.753 1 77.72 ? N9A NAD 600 B 1 HETATM 14 C C8A NAD . . . E 3 -10.803 -42.642 24.657 1 77.82 ? C8A NAD 600 B 1 HETATM 15 N N7A NAD . . . E 3 -9.628 -43.185 25.049 1 78.04 ? N7A NAD 600 B 1 HETATM 16 C C5A NAD . . . E 3 -8.619 -42.551 24.414 1 78.2 ? C5A NAD 600 B 1 HETATM 17 C C6A NAD . . . E 3 -7.236 -42.709 24.449 1 78.22 ? C6A NAD 600 B 1 HETATM 18 N N6A NAD . . . E 3 -6.696 -43.712 25.137 1 78.19 ? N6A NAD 600 B 1 HETATM 19 N N1A NAD . . . E 3 -6.434 -41.89 23.672 1 78.07 ? N1A NAD 600 B 1 HETATM 20 C C2A NAD . . . E 3 -7.007 -40.926 22.861 1 77.91 ? C2A NAD 600 B 1 HETATM 21 N N3A NAD . . . E 3 -8.382 -40.78 22.831 1 77.51 ? N3A NAD 600 B 1 HETATM 22 C C4A NAD . . . E 3 -9.177 -41.577 23.594 1 77.88 ? C4A NAD 600 B 1 HETATM 23 O O3 NAD . . . E 3 -17.804 -39.044 25.714 1 79.32 ? O3 NAD 600 B 1 HETATM 24 P PN NAD . . . E 3 -18.451 -38.422 24.381 1 79.68 ? PN NAD 600 B 1 HETATM 25 O O1N NAD . . . E 3 -19.878 -38.168 24.68 1 81.26 ? O1N NAD 600 B 1 HETATM 26 O O2N NAD . . . E 3 -17.622 -37.281 23.968 1 80.18 ? O2N NAD 600 B 1 HETATM 27 O O5D NAD . . . E 3 -18.357 -39.617 23.302 1 80.47 ? O5D NAD 600 B 1 HETATM 28 C C5D NAD . . . E 3 -19.141 -40.785 23.468 1 81.05 ? C5D NAD 600 B 1 HETATM 29 C C4D NAD . . . E 3 -20.45 -40.7 22.671 1 81.38 ? C4D NAD 600 B 1 HETATM 30 O O4D NAD . . . E 3 -20.623 -39.415 22.088 1 81.07 ? O4D NAD 600 B 1 HETATM 31 C C3D NAD . . . E 3 -20.554 -41.714 21.533 1 81.45 ? C3D NAD 600 B 1 HETATM 32 O O3D NAD . . . E 3 -21.31 -42.842 21.917 1 81.86 ? O3D NAD 600 B 1 HETATM 33 C C2D NAD . . . E 3 -21.214 -40.961 20.393 1 81.17 ? C2D NAD 600 B 1 HETATM 34 O O2D NAD . . . E 3 -22.552 -41.369 20.221 1 81.41 ? O2D NAD 600 B 1 HETATM 35 C C1D NAD . . . E 3 -21.151 -39.488 20.776 1 80.77 ? C1D NAD 600 B 1 HETATM 36 N N1N NAD . . . E 3 -20.292 -38.74 19.836 1 80.39 ? N1N NAD 600 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #