data_2OP0 # _model_server_result.job_id EUR7YBgflqsC75ISmJmP8w _model_server_result.datetime_utc '2024-11-01 12:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2op0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":450}' # _entry.id 2OP0 # _exptl.entry_id 2OP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OP0 _cell.length_a 132.305 _cell.length_b 132.305 _cell.length_c 82.911 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 132.305 132.305 41.4555 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 277 n n PA O2A NAD sing 278 n n PA O5B NAD sing 279 n n PA O3 NAD sing 280 n n O2A HOA2 NAD sing 281 n n O5B C5B NAD sing 282 n n C5B C4B NAD sing 283 n n C5B H51A NAD sing 284 n n C5B H52A NAD sing 285 n n C4B O4B NAD sing 286 n n C4B C3B NAD sing 287 n n C4B H4B NAD sing 288 n n O4B C1B NAD sing 289 n n C3B O3B NAD sing 290 n n C3B C2B NAD sing 291 n n C3B H3B NAD sing 292 n n O3B HO3A NAD sing 293 n n C2B O2B NAD sing 294 n n C2B C1B NAD sing 295 n n C2B H2B NAD sing 296 n n O2B HO2A NAD sing 297 n n C1B N9A NAD sing 298 n n C1B H1B NAD sing 299 n n N9A C8A NAD sing 300 n y N9A C4A NAD sing 301 n y C8A N7A NAD doub 302 n y C8A H8A NAD sing 303 n n N7A C5A NAD sing 304 n y C5A C6A NAD sing 305 n y C5A C4A NAD doub 306 n y C6A N6A NAD sing 307 n n C6A N1A NAD doub 308 n y N6A H61A NAD sing 309 n n N6A H62A NAD sing 310 n n N1A C2A NAD sing 311 n y C2A N3A NAD doub 312 n y C2A H2A NAD sing 313 n n N3A C4A NAD sing 314 n y O3 PN NAD sing 315 n n PN O1N NAD doub 316 n n PN O2N NAD sing 317 n n PN O5D NAD sing 318 n n O5D C5D NAD sing 319 n n C5D C4D NAD sing 320 n n C5D H51N NAD sing 321 n n C5D H52N NAD sing 322 n n C4D O4D NAD sing 323 n n C4D C3D NAD sing 324 n n C4D H4D NAD sing 325 n n O4D C1D NAD sing 326 n n C3D O3D NAD sing 327 n n C3D C2D NAD sing 328 n n C3D H3D NAD sing 329 n n O3D HO3N NAD sing 330 n n C2D O2D NAD sing 331 n n C2D C1D NAD sing 332 n n C2D H2D NAD sing 333 n n O2D HO2N NAD sing 334 n n C1D N1N NAD sing 335 n n C1D H1D NAD sing 336 n n N1N C2N NAD sing 337 n y N1N C6N NAD doub 338 n y C2N C3N NAD doub 339 n y C2N H2N NAD sing 340 n n C3N C7N NAD sing 341 n n C3N C4N NAD sing 342 n y C7N O7N NAD doub 343 n n C7N N7N NAD sing 344 n n N7N H71N NAD sing 345 n n N7N H72N NAD sing 346 n n C4N C5N NAD doub 347 n y C4N H4N NAD sing 348 n n C5N C6N NAD sing 349 n y C5N H5N NAD sing 350 n n C6N H6N NAD sing 351 n n # _atom_sites.entry_id 2OP0 _atom_sites.fract_transf_matrix[1][1] 0.007558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 426 110 SO4 SO4 . D 3 NAD B 1 450 450 NAD NAD . E 4 7PC B 1 500 500 7PC 7PC . F 5 HOH A 1 427 3 HOH HOH . F 5 HOH A 2 428 4 HOH HOH . F 5 HOH A 3 429 7 HOH HOH . F 5 HOH A 4 430 8 HOH HOH . F 5 HOH A 5 431 10 HOH HOH . F 5 HOH A 6 432 12 HOH HOH . F 5 HOH A 7 433 13 HOH HOH . F 5 HOH A 8 434 14 HOH HOH . F 5 HOH A 9 435 16 HOH HOH . F 5 HOH A 10 436 18 HOH HOH . F 5 HOH A 11 437 20 HOH HOH . F 5 HOH A 12 438 21 HOH HOH . F 5 HOH A 13 439 25 HOH HOH . F 5 HOH A 14 440 29 HOH HOH . F 5 HOH A 15 441 30 HOH HOH . F 5 HOH A 16 442 31 HOH HOH . F 5 HOH A 17 443 32 HOH HOH . F 5 HOH A 18 444 35 HOH HOH . F 5 HOH A 19 445 36 HOH HOH . F 5 HOH A 20 446 37 HOH HOH . F 5 HOH A 21 447 40 HOH HOH . F 5 HOH A 22 448 41 HOH HOH . F 5 HOH A 23 449 44 HOH HOH . F 5 HOH A 24 450 45 HOH HOH . F 5 HOH A 25 451 47 HOH HOH . F 5 HOH A 26 452 48 HOH HOH . F 5 HOH A 27 453 49 HOH HOH . F 5 HOH A 28 454 50 HOH HOH . F 5 HOH A 29 455 51 HOH HOH . F 5 HOH A 30 456 52 HOH HOH . F 5 HOH A 31 457 57 HOH HOH . F 5 HOH A 32 458 58 HOH HOH . F 5 HOH A 33 459 60 HOH HOH . F 5 HOH A 34 460 63 HOH HOH . F 5 HOH A 35 461 66 HOH HOH . F 5 HOH A 36 462 67 HOH HOH . F 5 HOH A 37 463 68 HOH HOH . F 5 HOH A 38 464 69 HOH HOH . F 5 HOH A 39 465 87 HOH HOH . F 5 HOH A 40 466 88 HOH HOH . F 5 HOH A 41 467 89 HOH HOH . F 5 HOH A 42 468 90 HOH HOH . F 5 HOH A 43 469 91 HOH HOH . F 5 HOH A 44 470 92 HOH HOH . F 5 HOH A 45 471 93 HOH HOH . F 5 HOH A 46 472 94 HOH HOH . F 5 HOH A 47 473 95 HOH HOH . F 5 HOH A 48 474 96 HOH HOH . F 5 HOH A 49 475 97 HOH HOH . F 5 HOH A 50 476 98 HOH HOH . F 5 HOH A 51 477 100 HOH HOH . G 5 HOH B 1 501 1 HOH HOH . G 5 HOH B 2 502 2 HOH HOH . G 5 HOH B 3 503 5 HOH HOH . G 5 HOH B 4 504 6 HOH HOH . G 5 HOH B 5 505 9 HOH HOH . G 5 HOH B 6 506 11 HOH HOH . G 5 HOH B 7 507 15 HOH HOH . G 5 HOH B 8 508 17 HOH HOH . G 5 HOH B 9 509 19 HOH HOH . G 5 HOH B 10 510 22 HOH HOH . G 5 HOH B 11 511 23 HOH HOH . G 5 HOH B 12 512 24 HOH HOH . G 5 HOH B 13 513 26 HOH HOH . G 5 HOH B 14 514 27 HOH HOH . G 5 HOH B 15 515 28 HOH HOH . G 5 HOH B 16 516 33 HOH HOH . G 5 HOH B 17 517 34 HOH HOH . G 5 HOH B 18 518 38 HOH HOH . G 5 HOH B 19 519 39 HOH HOH . G 5 HOH B 20 520 42 HOH HOH . G 5 HOH B 21 521 43 HOH HOH . G 5 HOH B 22 522 46 HOH HOH . G 5 HOH B 23 523 53 HOH HOH . G 5 HOH B 24 524 54 HOH HOH . G 5 HOH B 25 525 55 HOH HOH . G 5 HOH B 26 526 56 HOH HOH . G 5 HOH B 27 527 59 HOH HOH . G 5 HOH B 28 528 61 HOH HOH . G 5 HOH B 29 529 62 HOH HOH . G 5 HOH B 30 530 64 HOH HOH . G 5 HOH B 31 531 65 HOH HOH . G 5 HOH B 32 532 70 HOH HOH . G 5 HOH B 33 533 71 HOH HOH . G 5 HOH B 34 534 72 HOH HOH . G 5 HOH B 35 535 73 HOH HOH . G 5 HOH B 36 536 74 HOH HOH . G 5 HOH B 37 537 75 HOH HOH . G 5 HOH B 38 538 76 HOH HOH . G 5 HOH B 39 539 77 HOH HOH . G 5 HOH B 40 540 78 HOH HOH . G 5 HOH B 41 541 79 HOH HOH . G 5 HOH B 42 542 80 HOH HOH . G 5 HOH B 43 543 81 HOH HOH . G 5 HOH B 44 544 82 HOH HOH . G 5 HOH B 45 545 83 HOH HOH . G 5 HOH B 46 546 84 HOH HOH . G 5 HOH B 47 547 85 HOH HOH . G 5 HOH B 48 548 86 HOH HOH . G 5 HOH B 49 549 99 HOH HOH . G 5 HOH B 50 550 101 HOH HOH . G 5 HOH B 51 551 102 HOH HOH . G 5 HOH B 52 552 103 HOH HOH . G 5 HOH B 53 553 104 HOH HOH . G 5 HOH B 54 554 105 HOH HOH . G 5 HOH B 55 555 106 HOH HOH . G 5 HOH B 56 556 107 HOH HOH . G 5 HOH B 57 557 108 HOH HOH . G 5 HOH B 58 558 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 8.267 100.021 32.215 1 17.97 ? PA NAD 450 B 1 HETATM 2 O O1A NAD . . . D 3 7.064 100.522 31.456 1 26.98 ? O1A NAD 450 B 1 HETATM 3 O O2A NAD . . . D 3 8.075 99.236 33.496 1 26.73 ? O2A NAD 450 B 1 HETATM 4 O O5B NAD . . . D 3 9.214 101.281 32.567 1 24.8 ? O5B NAD 450 B 1 HETATM 5 C C5B NAD . . . D 3 8.971 102.594 32.067 1 16.3 ? C5B NAD 450 B 1 HETATM 6 C C4B NAD . . . D 3 8.186 103.356 33.123 1 19.12 ? C4B NAD 450 B 1 HETATM 7 O O4B NAD . . . D 3 8.564 104.734 33.119 1 14.47 ? O4B NAD 450 B 1 HETATM 8 C C3B NAD . . . D 3 6.696 103.296 32.815 1 29.55 ? C3B NAD 450 B 1 HETATM 9 O O3B NAD . . . D 3 6.014 102.579 33.85 1 28.94 ? O3B NAD 450 B 1 HETATM 10 C C2B NAD . . . D 3 6.228 104.742 32.717 1 19.45 ? C2B NAD 450 B 1 HETATM 11 O O2B NAD . . . D 3 5.063 104.991 33.509 1 20.17 ? O2B NAD 450 B 1 HETATM 12 C C1B NAD . . . D 3 7.404 105.566 33.212 1 14.33 ? C1B NAD 450 B 1 HETATM 13 N N9A NAD . . . D 3 7.568 106.784 32.383 1 18.97 ? N9A NAD 450 B 1 HETATM 14 C C8A NAD . . . D 3 7.497 106.902 31.027 1 15.27 ? C8A NAD 450 B 1 HETATM 15 N N7A NAD . . . D 3 7.693 108.2 30.598 1 12 ? N7A NAD 450 B 1 HETATM 16 C C5A NAD . . . D 3 7.904 108.944 31.704 1 10.57 ? C5A NAD 450 B 1 HETATM 17 C C6A NAD . . . D 3 8.185 110.345 32.069 1 11.22 ? C6A NAD 450 B 1 HETATM 18 N N6A NAD . . . D 3 8.074 111.333 31.179 1 8.61 ? N6A NAD 450 B 1 HETATM 19 N N1A NAD . . . D 3 8.548 110.543 33.35 1 8.67 ? N1A NAD 450 B 1 HETATM 20 C C2A NAD . . . D 3 8.349 109.683 34.277 1 6.28 ? C2A NAD 450 B 1 HETATM 21 N N3A NAD . . . D 3 7.982 108.478 34.093 1 8.55 ? N3A NAD 450 B 1 HETATM 22 C C4A NAD . . . D 3 7.809 108.02 32.815 1 14.97 ? C4A NAD 450 B 1 HETATM 23 O O3 NAD . . . D 3 9.15 99.141 31.183 1 25.13 ? O3 NAD 450 B 1 HETATM 24 P PN NAD . . . D 3 10.692 98.707 31.429 1 24.86 ? PN NAD 450 B 1 HETATM 25 O O1N NAD . . . D 3 10.854 98.229 32.862 1 15.78 ? O1N NAD 450 B 1 HETATM 26 O O2N NAD . . . D 3 11.084 97.804 30.284 1 14.28 ? O2N NAD 450 B 1 HETATM 27 O O5D NAD . . . D 3 11.485 100.104 31.244 1 13.39 ? O5D NAD 450 B 1 HETATM 28 C C5D NAD . . . D 3 12.449 100.578 32.182 1 6.22 ? C5D NAD 450 B 1 HETATM 29 C C4D NAD . . . D 3 13.773 100.824 31.459 1 6.05 ? C4D NAD 450 B 1 HETATM 30 O O4D NAD . . . D 3 14.357 99.589 31.02 1 8.5 ? O4D NAD 450 B 1 HETATM 31 C C3D NAD . . . D 3 13.638 101.697 30.218 1 7.02 ? C3D NAD 450 B 1 HETATM 32 O O3D NAD . . . D 3 14.659 102.707 30.245 1 4.05 ? O3D NAD 450 B 1 HETATM 33 C C2D NAD . . . D 3 13.887 100.761 29.044 1 13.3 ? C2D NAD 450 B 1 HETATM 34 O O2D NAD . . . D 3 14.472 101.458 27.937 1 3.02 ? O2D NAD 450 B 1 HETATM 35 C C1D NAD . . . D 3 14.829 99.742 29.674 1 13.75 ? C1D NAD 450 B 1 HETATM 36 N N1N NAD . . . D 3 14.923 98.448 28.983 1 11.93 ? N1N NAD 450 B 1 HETATM 37 C C2N NAD . . . D 3 13.864 97.623 28.891 1 13.36 ? C2N NAD 450 B 1 HETATM 38 C C3N NAD . . . D 3 13.987 96.389 28.242 1 13.14 ? C3N NAD 450 B 1 HETATM 39 C C7N NAD . . . D 3 12.826 95.44 28.117 1 15.93 ? C7N NAD 450 B 1 HETATM 40 O O7N NAD . . . D 3 12.954 94.386 27.32 1 20.5 ? O7N NAD 450 B 1 HETATM 41 N N7N NAD . . . D 3 11.744 95.615 28.749 1 14.79 ? N7N NAD 450 B 1 HETATM 42 C C4N NAD . . . D 3 15.209 96.021 27.699 1 5.92 ? C4N NAD 450 B 1 HETATM 43 C C5N NAD . . . D 3 16.286 96.889 27.813 1 5.36 ? C5N NAD 450 B 1 HETATM 44 C C6N NAD . . . D 3 16.116 98.101 28.471 1 4.39 ? C6N NAD 450 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #