data_2OP1
#
_model_server_result.job_id            ITWzokoFNmcTU004Te9HYQ 
_model_server_result.datetime_utc      '2024-11-27 21:04:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2op1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    2OP1 
#
_exptl.entry_id    2OP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              346.207 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(2,4-DICHLOROPHENOXY)-5-(PYRIDIN-2-YLMETHYL)PHENOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OP1 
_cell.length_a            131.498 
_cell.length_b            131.498 
_cell.length_c            82.334 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.498 131.498 41.167 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C18 H13 Cl2 N O2' 
_chem_comp.formula_weight    346.207 
_chem_comp.id                8PC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(2,4-DICHLOROPHENOXY)-5-(PYRIDIN-2-YLMETHYL)PHENOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C17 8PC sing 1 n n 
C17 C22 8PC doub 2 n y 
C17 C16 8PC sing 3 n y 
C16 C15 8PC doub 4 n y 
C16 H16 8PC sing 5 n n 
C15 C14 8PC sing 6 n y 
C15 CL2 8PC sing 7 n n 
C14 C19 8PC doub 8 n y 
C14 O13 8PC sing 9 n n 
C19 C22 8PC sing 10 n y 
C19 H19 8PC sing 11 n n 
C22 H22 8PC sing 12 n n 
O13 C2 8PC sing 13 n n 
C2 C1 8PC sing 14 n y 
C2 C3 8PC doub 15 n y 
C3 C4 8PC sing 16 n y 
C3 H3 8PC sing 17 n n 
C4 C5 8PC doub 18 n y 
C4 H4 8PC sing 19 n n 
C5 C6 8PC sing 20 n y 
C5 C7 8PC sing 21 n n 
C6 C1 8PC doub 22 n y 
C6 H6 8PC sing 23 n n 
C1 O22 8PC sing 24 n n 
O22 HO22 8PC sing 25 n n 
C7 C23 8PC sing 26 n n 
C7 H71 8PC sing 27 n n 
C7 H72 8PC sing 28 n n 
C23 N24 8PC sing 29 n y 
C23 C28 8PC doub 30 n y 
N24 C25 8PC doub 31 n y 
C25 C26 8PC sing 32 n y 
C25 H25 8PC sing 33 n n 
C26 C27 8PC doub 34 n y 
C26 H26 8PC sing 35 n n 
C27 C28 8PC sing 36 n y 
C27 H27 8PC sing 37 n n 
C28 H28 8PC sing 38 n n 
#
_atom_sites.entry_id                     2OP1 
_atom_sites.fract_transf_matrix[1][1]    0.007605 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012146 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 450 450 NAD NAD . 
D 3 8PC A 1 500 500 8PC 8PC . 
E 2 NAD B 1 450 450 NAD NAD . 
F 3 8PC B 1 500 500 8PC 8PC . 
G 4 HOH A 1 504 504 HOH HOH . 
G 4 HOH A 2 506 506 HOH HOH . 
G 4 HOH A 3 508 508 HOH HOH . 
G 4 HOH A 4 509 509 HOH HOH . 
G 4 HOH A 5 511 511 HOH HOH . 
G 4 HOH A 6 515 515 HOH HOH . 
G 4 HOH A 7 517 517 HOH HOH . 
G 4 HOH A 8 518 518 HOH HOH . 
G 4 HOH A 9 520 520 HOH HOH . 
G 4 HOH A 10 521 521 HOH HOH . 
G 4 HOH A 11 523 523 HOH HOH . 
G 4 HOH A 12 524 524 HOH HOH . 
G 4 HOH A 13 525 525 HOH HOH . 
G 4 HOH A 14 526 526 HOH HOH . 
G 4 HOH A 15 527 527 HOH HOH . 
G 4 HOH A 16 528 528 HOH HOH . 
G 4 HOH A 17 531 531 HOH HOH . 
G 4 HOH A 18 536 536 HOH HOH . 
G 4 HOH A 19 540 540 HOH HOH . 
G 4 HOH A 20 542 542 HOH HOH . 
G 4 HOH A 21 543 543 HOH HOH . 
G 4 HOH A 22 544 544 HOH HOH . 
G 4 HOH A 23 545 545 HOH HOH . 
G 4 HOH A 24 549 549 HOH HOH . 
G 4 HOH A 25 552 552 HOH HOH . 
G 4 HOH A 26 562 562 HOH HOH . 
G 4 HOH A 27 563 563 HOH HOH . 
G 4 HOH A 28 575 575 HOH HOH . 
G 4 HOH A 29 585 585 HOH HOH . 
G 4 HOH A 30 586 586 HOH HOH . 
G 4 HOH A 31 598 598 HOH HOH . 
G 4 HOH A 32 599 599 HOH HOH . 
G 4 HOH A 33 600 600 HOH HOH . 
G 4 HOH A 34 601 601 HOH HOH . 
G 4 HOH A 35 602 602 HOH HOH . 
G 4 HOH A 36 603 603 HOH HOH . 
G 4 HOH A 37 604 604 HOH HOH . 
G 4 HOH A 38 605 605 HOH HOH . 
G 4 HOH A 39 622 622 HOH HOH . 
G 4 HOH A 40 623 623 HOH HOH . 
G 4 HOH A 41 624 624 HOH HOH . 
G 4 HOH A 42 625 625 HOH HOH . 
G 4 HOH A 43 626 626 HOH HOH . 
G 4 HOH A 44 627 627 HOH HOH . 
G 4 HOH A 45 628 628 HOH HOH . 
G 4 HOH A 46 629 629 HOH HOH . 
G 4 HOH A 47 630 630 HOH HOH . 
G 4 HOH A 48 631 631 HOH HOH . 
G 4 HOH A 49 632 632 HOH HOH . 
G 4 HOH A 50 633 633 HOH HOH . 
G 4 HOH A 51 634 634 HOH HOH . 
G 4 HOH A 52 636 636 HOH HOH . 
G 4 HOH A 53 637 637 HOH HOH . 
G 4 HOH A 54 638 638 HOH HOH . 
G 4 HOH A 55 639 639 HOH HOH . 
G 4 HOH A 56 640 640 HOH HOH . 
G 4 HOH A 57 641 641 HOH HOH . 
G 4 HOH A 58 653 653 HOH HOH . 
H 4 HOH B 1 501 501 HOH HOH . 
H 4 HOH B 2 502 502 HOH HOH . 
H 4 HOH B 3 503 503 HOH HOH . 
H 4 HOH B 4 505 505 HOH HOH . 
H 4 HOH B 5 507 507 HOH HOH . 
H 4 HOH B 6 510 510 HOH HOH . 
H 4 HOH B 7 512 512 HOH HOH . 
H 4 HOH B 8 513 513 HOH HOH . 
H 4 HOH B 9 514 514 HOH HOH . 
H 4 HOH B 10 516 516 HOH HOH . 
H 4 HOH B 11 519 519 HOH HOH . 
H 4 HOH B 12 522 522 HOH HOH . 
H 4 HOH B 13 529 529 HOH HOH . 
H 4 HOH B 14 530 530 HOH HOH . 
H 4 HOH B 15 532 532 HOH HOH . 
H 4 HOH B 16 533 533 HOH HOH . 
H 4 HOH B 17 539 539 HOH HOH . 
H 4 HOH B 18 541 541 HOH HOH . 
H 4 HOH B 19 546 546 HOH HOH . 
H 4 HOH B 20 548 548 HOH HOH . 
H 4 HOH B 21 551 551 HOH HOH . 
H 4 HOH B 22 553 553 HOH HOH . 
H 4 HOH B 23 554 554 HOH HOH . 
H 4 HOH B 24 556 556 HOH HOH . 
H 4 HOH B 25 557 557 HOH HOH . 
H 4 HOH B 26 558 558 HOH HOH . 
H 4 HOH B 27 559 559 HOH HOH . 
H 4 HOH B 28 560 560 HOH HOH . 
H 4 HOH B 29 561 561 HOH HOH . 
H 4 HOH B 30 565 565 HOH HOH . 
H 4 HOH B 31 567 567 HOH HOH . 
H 4 HOH B 32 578 578 HOH HOH . 
H 4 HOH B 33 579 579 HOH HOH . 
H 4 HOH B 34 589 589 HOH HOH . 
H 4 HOH B 35 590 590 HOH HOH . 
H 4 HOH B 36 594 594 HOH HOH . 
H 4 HOH B 37 606 606 HOH HOH . 
H 4 HOH B 38 607 607 HOH HOH . 
H 4 HOH B 39 608 608 HOH HOH . 
H 4 HOH B 40 609 609 HOH HOH . 
H 4 HOH B 41 610 610 HOH HOH . 
H 4 HOH B 42 611 611 HOH HOH . 
H 4 HOH B 43 612 612 HOH HOH . 
H 4 HOH B 44 613 613 HOH HOH . 
H 4 HOH B 45 614 614 HOH HOH . 
H 4 HOH B 46 615 615 HOH HOH . 
H 4 HOH B 47 616 616 HOH HOH . 
H 4 HOH B 48 617 617 HOH HOH . 
H 4 HOH B 49 618 618 HOH HOH . 
H 4 HOH B 50 619 619 HOH HOH . 
H 4 HOH B 51 620 620 HOH HOH . 
H 4 HOH B 52 621 621 HOH HOH . 
H 4 HOH B 53 635 635 HOH HOH . 
H 4 HOH B 54 642 642 HOH HOH . 
H 4 HOH B 55 643 643 HOH HOH . 
H 4 HOH B 56 644 644 HOH HOH . 
H 4 HOH B 57 645 645 HOH HOH . 
H 4 HOH B 58 646 646 HOH HOH . 
H 4 HOH B 59 647 647 HOH HOH . 
H 4 HOH B 60 648 648 HOH HOH . 
H 4 HOH B 61 649 649 HOH HOH . 
H 4 HOH B 62 650 650 HOH HOH . 
H 4 HOH B 63 651 651 HOH HOH . 
H 4 HOH B 64 652 652 HOH HOH . 
H 4 HOH B 65 654 654 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL1 8PC . . . D 3 54.923 88.676 31.972 1 44.76 ? CL1 8PC 500 A 1 
HETATM 2 C C17 8PC . . . D 3 53.799 89.683 32.948 1 40.57 ? C17 8PC 500 A 1 
HETATM 3 C C16 8PC . . . D 3 53.067 89.095 33.974 1 44.65 ? C16 8PC 500 A 1 
HETATM 4 C C15 8PC . . . D 3 52.196 89.858 34.745 1 53.39 ? C15 8PC 500 A 1 
HETATM 5 CL CL2 8PC . . . D 3 51.243 89.113 36.084 1 46.33 ? CL2 8PC 500 A 1 
HETATM 6 C C14 8PC . . . D 3 52.051 91.206 34.466 1 57.62 ? C14 8PC 500 A 1 
HETATM 7 C C19 8PC . . . D 3 52.797 91.81 33.456 1 44.49 ? C19 8PC 500 A 1 
HETATM 8 C C22 8PC . . . D 3 53.662 91.043 32.684 1 40.96 ? C22 8PC 500 A 1 
HETATM 9 O O13 8PC . . . D 3 51.213 91.952 35.248 1 59.16 ? O13 8PC 500 A 1 
HETATM 10 C C2 8PC . . . D 3 50.623 93.097 34.788 1 55.84 ? C2 8PC 500 A 1 
HETATM 11 C C3 8PC . . . D 3 50.907 94.261 35.484 1 53.47 ? C3 8PC 500 A 1 
HETATM 12 C C4 8PC . . . D 3 50.355 95.465 35.094 1 44.62 ? C4 8PC 500 A 1 
HETATM 13 C C5 8PC . . . D 3 49.495 95.508 34.008 1 38.27 ? C5 8PC 500 A 1 
HETATM 14 C C6 8PC . . . D 3 49.205 94.343 33.309 1 43.65 ? C6 8PC 500 A 1 
HETATM 15 C C1 8PC . . . D 3 49.767 93.129 33.694 1 52.7 ? C1 8PC 500 A 1 
HETATM 16 O O22 8PC . . . D 3 49.47 91.997 32.993 1 38.15 ? O22 8PC 500 A 1 
HETATM 17 C C7 8PC . . . D 3 48.885 96.814 33.566 1 28.84 ? C7 8PC 500 A 1 
HETATM 18 C C23 8PC . . . D 3 49.969 97.845 33.349 1 39.7 ? C23 8PC 500 A 1 
HETATM 19 N N24 8PC . . . D 3 50.015 98.503 32.17 1 44.72 ? N24 8PC 500 A 1 
HETATM 20 C C25 8PC . . . D 3 50.946 99.431 31.925 1 40.28 ? C25 8PC 500 A 1 
HETATM 21 C C26 8PC . . . D 3 51.897 99.744 32.89 1 54.87 ? C26 8PC 500 A 1 
HETATM 22 C C27 8PC . . . D 3 51.882 99.084 34.112 1 55.54 ? C27 8PC 500 A 1 
HETATM 23 C C28 8PC . . . D 3 50.902 98.132 34.342 1 52.86 ? C28 8PC 500 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#