data_2OP1 # _model_server_result.job_id WgfiNjxYkbPqEDwrpzE-dg _model_server_result.datetime_utc '2024-11-01 12:29:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2op1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 2OP1 # _exptl.entry_id 2OP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2,4-DICHLOROPHENOXY)-5-(PYRIDIN-2-YLMETHYL)PHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OP1 _cell.length_a 131.498 _cell.length_b 131.498 _cell.length_c 82.334 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.498 131.498 41.167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C18 H13 Cl2 N O2' _chem_comp.formula_weight 346.207 _chem_comp.id 8PC _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2,4-DICHLOROPHENOXY)-5-(PYRIDIN-2-YLMETHYL)PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C17 8PC sing 1 n n C17 C22 8PC doub 2 n y C17 C16 8PC sing 3 n y C16 C15 8PC doub 4 n y C16 H16 8PC sing 5 n n C15 C14 8PC sing 6 n y C15 CL2 8PC sing 7 n n C14 C19 8PC doub 8 n y C14 O13 8PC sing 9 n n C19 C22 8PC sing 10 n y C19 H19 8PC sing 11 n n C22 H22 8PC sing 12 n n O13 C2 8PC sing 13 n n C2 C1 8PC sing 14 n y C2 C3 8PC doub 15 n y C3 C4 8PC sing 16 n y C3 H3 8PC sing 17 n n C4 C5 8PC doub 18 n y C4 H4 8PC sing 19 n n C5 C6 8PC sing 20 n y C5 C7 8PC sing 21 n n C6 C1 8PC doub 22 n y C6 H6 8PC sing 23 n n C1 O22 8PC sing 24 n n O22 HO22 8PC sing 25 n n C7 C23 8PC sing 26 n n C7 H71 8PC sing 27 n n C7 H72 8PC sing 28 n n C23 N24 8PC sing 29 n y C23 C28 8PC doub 30 n y N24 C25 8PC doub 31 n y C25 C26 8PC sing 32 n y C25 H25 8PC sing 33 n n C26 C27 8PC doub 34 n y C26 H26 8PC sing 35 n n C27 C28 8PC sing 36 n y C27 H27 8PC sing 37 n n C28 H28 8PC sing 38 n n # _atom_sites.entry_id 2OP1 _atom_sites.fract_transf_matrix[1][1] 0.007605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 450 450 NAD NAD . D 3 8PC A 1 500 500 8PC 8PC . E 2 NAD B 1 450 450 NAD NAD . F 3 8PC B 1 500 500 8PC 8PC . G 4 HOH A 1 504 504 HOH HOH . G 4 HOH A 2 506 506 HOH HOH . G 4 HOH A 3 508 508 HOH HOH . G 4 HOH A 4 509 509 HOH HOH . G 4 HOH A 5 511 511 HOH HOH . G 4 HOH A 6 515 515 HOH HOH . G 4 HOH A 7 517 517 HOH HOH . G 4 HOH A 8 518 518 HOH HOH . G 4 HOH A 9 520 520 HOH HOH . G 4 HOH A 10 521 521 HOH HOH . G 4 HOH A 11 523 523 HOH HOH . G 4 HOH A 12 524 524 HOH HOH . G 4 HOH A 13 525 525 HOH HOH . G 4 HOH A 14 526 526 HOH HOH . G 4 HOH A 15 527 527 HOH HOH . G 4 HOH A 16 528 528 HOH HOH . G 4 HOH A 17 531 531 HOH HOH . G 4 HOH A 18 536 536 HOH HOH . G 4 HOH A 19 540 540 HOH HOH . G 4 HOH A 20 542 542 HOH HOH . G 4 HOH A 21 543 543 HOH HOH . G 4 HOH A 22 544 544 HOH HOH . G 4 HOH A 23 545 545 HOH HOH . G 4 HOH A 24 549 549 HOH HOH . G 4 HOH A 25 552 552 HOH HOH . G 4 HOH A 26 562 562 HOH HOH . G 4 HOH A 27 563 563 HOH HOH . G 4 HOH A 28 575 575 HOH HOH . G 4 HOH A 29 585 585 HOH HOH . G 4 HOH A 30 586 586 HOH HOH . G 4 HOH A 31 598 598 HOH HOH . G 4 HOH A 32 599 599 HOH HOH . G 4 HOH A 33 600 600 HOH HOH . G 4 HOH A 34 601 601 HOH HOH . G 4 HOH A 35 602 602 HOH HOH . G 4 HOH A 36 603 603 HOH HOH . G 4 HOH A 37 604 604 HOH HOH . G 4 HOH A 38 605 605 HOH HOH . G 4 HOH A 39 622 622 HOH HOH . G 4 HOH A 40 623 623 HOH HOH . G 4 HOH A 41 624 624 HOH HOH . G 4 HOH A 42 625 625 HOH HOH . G 4 HOH A 43 626 626 HOH HOH . G 4 HOH A 44 627 627 HOH HOH . G 4 HOH A 45 628 628 HOH HOH . G 4 HOH A 46 629 629 HOH HOH . G 4 HOH A 47 630 630 HOH HOH . G 4 HOH A 48 631 631 HOH HOH . G 4 HOH A 49 632 632 HOH HOH . G 4 HOH A 50 633 633 HOH HOH . G 4 HOH A 51 634 634 HOH HOH . G 4 HOH A 52 636 636 HOH HOH . G 4 HOH A 53 637 637 HOH HOH . G 4 HOH A 54 638 638 HOH HOH . G 4 HOH A 55 639 639 HOH HOH . G 4 HOH A 56 640 640 HOH HOH . G 4 HOH A 57 641 641 HOH HOH . G 4 HOH A 58 653 653 HOH HOH . H 4 HOH B 1 501 501 HOH HOH . H 4 HOH B 2 502 502 HOH HOH . H 4 HOH B 3 503 503 HOH HOH . H 4 HOH B 4 505 505 HOH HOH . H 4 HOH B 5 507 507 HOH HOH . H 4 HOH B 6 510 510 HOH HOH . H 4 HOH B 7 512 512 HOH HOH . H 4 HOH B 8 513 513 HOH HOH . H 4 HOH B 9 514 514 HOH HOH . H 4 HOH B 10 516 516 HOH HOH . H 4 HOH B 11 519 519 HOH HOH . H 4 HOH B 12 522 522 HOH HOH . H 4 HOH B 13 529 529 HOH HOH . H 4 HOH B 14 530 530 HOH HOH . H 4 HOH B 15 532 532 HOH HOH . H 4 HOH B 16 533 533 HOH HOH . H 4 HOH B 17 539 539 HOH HOH . H 4 HOH B 18 541 541 HOH HOH . H 4 HOH B 19 546 546 HOH HOH . H 4 HOH B 20 548 548 HOH HOH . H 4 HOH B 21 551 551 HOH HOH . H 4 HOH B 22 553 553 HOH HOH . H 4 HOH B 23 554 554 HOH HOH . H 4 HOH B 24 556 556 HOH HOH . H 4 HOH B 25 557 557 HOH HOH . H 4 HOH B 26 558 558 HOH HOH . H 4 HOH B 27 559 559 HOH HOH . H 4 HOH B 28 560 560 HOH HOH . H 4 HOH B 29 561 561 HOH HOH . H 4 HOH B 30 565 565 HOH HOH . H 4 HOH B 31 567 567 HOH HOH . H 4 HOH B 32 578 578 HOH HOH . H 4 HOH B 33 579 579 HOH HOH . H 4 HOH B 34 589 589 HOH HOH . H 4 HOH B 35 590 590 HOH HOH . H 4 HOH B 36 594 594 HOH HOH . H 4 HOH B 37 606 606 HOH HOH . H 4 HOH B 38 607 607 HOH HOH . H 4 HOH B 39 608 608 HOH HOH . H 4 HOH B 40 609 609 HOH HOH . H 4 HOH B 41 610 610 HOH HOH . H 4 HOH B 42 611 611 HOH HOH . H 4 HOH B 43 612 612 HOH HOH . H 4 HOH B 44 613 613 HOH HOH . H 4 HOH B 45 614 614 HOH HOH . H 4 HOH B 46 615 615 HOH HOH . H 4 HOH B 47 616 616 HOH HOH . H 4 HOH B 48 617 617 HOH HOH . H 4 HOH B 49 618 618 HOH HOH . H 4 HOH B 50 619 619 HOH HOH . H 4 HOH B 51 620 620 HOH HOH . H 4 HOH B 52 621 621 HOH HOH . H 4 HOH B 53 635 635 HOH HOH . H 4 HOH B 54 642 642 HOH HOH . H 4 HOH B 55 643 643 HOH HOH . H 4 HOH B 56 644 644 HOH HOH . H 4 HOH B 57 645 645 HOH HOH . H 4 HOH B 58 646 646 HOH HOH . H 4 HOH B 59 647 647 HOH HOH . H 4 HOH B 60 648 648 HOH HOH . H 4 HOH B 61 649 649 HOH HOH . H 4 HOH B 62 650 650 HOH HOH . H 4 HOH B 63 651 651 HOH HOH . H 4 HOH B 64 652 652 HOH HOH . H 4 HOH B 65 654 654 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 8PC . . . F 3 8.107 103.485 23.873 1 45.08 ? CL1 8PC 500 B 1 HETATM 2 C C17 8PC . . . F 3 9.324 102.362 24.566 1 31.86 ? C17 8PC 500 B 1 HETATM 3 C C16 8PC . . . F 3 9.276 102.094 25.923 1 32.66 ? C16 8PC 500 B 1 HETATM 4 C C15 8PC . . . F 3 10.2 101.229 26.489 1 30.65 ? C15 8PC 500 B 1 HETATM 5 CL CL2 8PC . . . F 3 10.126 100.895 28.255 1 54.53 ? CL2 8PC 500 B 1 HETATM 6 C C14 8PC . . . F 3 11.167 100.622 25.703 1 27.92 ? C14 8PC 500 B 1 HETATM 7 C C19 8PC . . . F 3 11.235 100.9 24.343 1 23.04 ? C19 8PC 500 B 1 HETATM 8 C C22 8PC . . . F 3 10.303 101.765 23.775 1 35.04 ? C22 8PC 500 B 1 HETATM 9 O O13 8PC . . . F 3 12.07 99.787 26.315 1 29 ? O13 8PC 500 B 1 HETATM 10 C C2 8PC . . . F 3 12.311 98.52 25.856 1 22.74 ? C2 8PC 500 B 1 HETATM 11 C C3 8PC . . . F 3 11.329 97.534 25.821 1 23.52 ? C3 8PC 500 B 1 HETATM 12 C C4 8PC . . . F 3 11.653 96.264 25.346 1 26.24 ? C4 8PC 500 B 1 HETATM 13 C C5 8PC . . . F 3 12.957 95.977 24.938 1 20.22 ? C5 8PC 500 B 1 HETATM 14 C C6 8PC . . . F 3 13.922 96.968 24.993 1 13.95 ? C6 8PC 500 B 1 HETATM 15 C C1 8PC . . . F 3 13.595 98.23 25.459 1 16.16 ? C1 8PC 500 B 1 HETATM 16 O O22 8PC . . . F 3 14.538 99.204 25.52 1 14.99 ? O22 8PC 500 B 1 HETATM 17 C C7 8PC . . . F 3 13.36 94.616 24.412 1 16.02 ? C7 8PC 500 B 1 HETATM 18 C C23 8PC . . . F 3 12.917 94.455 22.976 1 28.1 ? C23 8PC 500 B 1 HETATM 19 N N24 8PC . . . F 3 13.548 93.556 22.184 1 28.55 ? N24 8PC 500 B 1 HETATM 20 C C25 8PC . . . F 3 13.173 93.384 20.909 1 30.47 ? C25 8PC 500 B 1 HETATM 21 C C26 8PC . . . F 3 12.134 94.129 20.37 1 20.7 ? C26 8PC 500 B 1 HETATM 22 C C27 8PC . . . F 3 11.468 95.059 21.146 1 37.06 ? C27 8PC 500 B 1 HETATM 23 C C28 8PC . . . F 3 11.868 95.222 22.467 1 41.34 ? C28 8PC 500 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #