data_2OPB # _model_server_result.job_id jb-Jj8BQ_biNxPK0ZmO30A _model_server_result.datetime_utc '2024-11-24 08:09:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2opb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":4002}' # _entry.id 2OPB # _exptl.entry_id 2OPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3-(FLUOROMETHYL)-7-(THIOMORPHOLIN-4-YLSULFONYL)-1,2,3,4-TETRAHYDROISOQUINOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OPB _cell.length_a 94.42 _cell.length_b 94.42 _cell.length_c 187.67 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C14 H19 F N2 O2 S2' _chem_comp.formula_weight 330.441 _chem_comp.id F21 _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-(FLUOROMETHYL)-7-(THIOMORPHOLIN-4-YLSULFONYL)-1,2,3,4-TETRAHYDROISOQUINOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-FLUOROMETHYL 7-THIOMORPHOLINOSULFONAMIDE 1,2,3,4-TETRAHYDROISOQUINOLINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 F21 sing 83 n n C12 N1 F21 sing 84 n n C12 H121 F21 sing 85 n n C12 H122 F21 sing 86 n n C13 S2 F21 sing 87 n n C13 H131 F21 sing 88 n n C13 H132 F21 sing 89 n n S2 C15 F21 sing 90 n n C15 C14 F21 sing 91 n n C15 H151 F21 sing 92 n n C15 H152 F21 sing 93 n n C14 N1 F21 sing 94 n n C14 H141 F21 sing 95 n n C14 H142 F21 sing 96 n n N1 S1 F21 sing 97 n n S1 O2 F21 doub 98 n n S1 O1 F21 doub 99 n n S1 C7 F21 sing 100 n n C7 C8 F21 sing 101 n y C7 C6 F21 doub 102 n y C8 C9 F21 doub 103 n y C8 H8 F21 sing 104 n n C9 C1 F21 sing 105 n n C9 C10 F21 sing 106 n y C1 N2 F21 sing 107 n n C1 H11 F21 sing 108 n n C1 H12 F21 sing 109 n n N2 C3 F21 sing 110 n n N2 HN2 F21 sing 111 n n C3 C11 F21 sing 112 n n C3 C4 F21 sing 113 n n C3 H3 F21 sing 114 n n C11 F1 F21 sing 115 n n C11 H111 F21 sing 116 n n C11 H112 F21 sing 117 n n C4 C10 F21 sing 118 n n C4 H41 F21 sing 119 n n C4 H42 F21 sing 120 n n C10 C5 F21 doub 121 n y C5 C6 F21 sing 122 n y C5 H5 F21 sing 123 n n C6 H6 F21 sing 124 n n # _atom_sites.entry_id 2OPB _atom_sites.fract_transf_matrix[1][1] 0.010591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F21 A 1 4001 4001 F21 F21 . D 3 SAH A 1 3001 3001 SAH SAH . E 4 PO4 B 1 290 1 PO4 PO4 . F 2 F21 B 1 4002 4002 F21 F21 . G 3 SAH B 1 3002 3002 SAH SAH . H 5 HOH A 1 4002 1001 HOH WAT . H 5 HOH A 2 4003 1002 HOH WAT . H 5 HOH A 3 4004 1003 HOH WAT . H 5 HOH A 4 4005 1004 HOH WAT . H 5 HOH A 5 4006 1006 HOH WAT . H 5 HOH A 6 4007 1008 HOH HOH . H 5 HOH A 7 4008 1009 HOH WAT . H 5 HOH A 8 4009 1016 HOH WAT . H 5 HOH A 9 4010 1017 HOH WAT . H 5 HOH A 10 4011 1018 HOH WAT . H 5 HOH A 11 4012 1025 HOH WAT . H 5 HOH A 12 4013 1027 HOH WAT . H 5 HOH A 13 4014 1029 HOH WAT . H 5 HOH A 14 4015 1030 HOH WAT . H 5 HOH A 15 4016 1031 HOH WAT . H 5 HOH A 16 4017 1033 HOH WAT . H 5 HOH A 17 4018 1036 HOH WAT . H 5 HOH A 18 4019 1037 HOH WAT . H 5 HOH A 19 4020 1038 HOH WAT . H 5 HOH A 20 4021 1039 HOH WAT . H 5 HOH A 21 4022 1040 HOH WAT . H 5 HOH A 22 4023 1041 HOH WAT . H 5 HOH A 23 4024 1042 HOH WAT . H 5 HOH A 24 4025 1044 HOH WAT . H 5 HOH A 25 4026 1045 HOH WAT . H 5 HOH A 26 4027 1047 HOH WAT . H 5 HOH A 27 4028 1050 HOH WAT . H 5 HOH A 28 4029 1052 HOH WAT . H 5 HOH A 29 4030 1055 HOH WAT . H 5 HOH A 30 4031 1056 HOH WAT . H 5 HOH A 31 4032 1057 HOH WAT . H 5 HOH A 32 4033 1061 HOH WAT . H 5 HOH A 33 4034 1064 HOH WAT . H 5 HOH A 34 4035 1066 HOH WAT . H 5 HOH A 35 4036 1067 HOH WAT . H 5 HOH A 36 4037 1070 HOH HOH . H 5 HOH A 37 4038 1071 HOH HOH . H 5 HOH A 38 4039 1072 HOH HOH . H 5 HOH A 39 4040 1073 HOH HOH . I 5 HOH B 1 4003 1005 HOH WAT . I 5 HOH B 2 4004 1007 HOH WAT . I 5 HOH B 3 4005 1010 HOH WAT . I 5 HOH B 4 4006 1011 HOH WAT . I 5 HOH B 5 4007 1012 HOH WAT . I 5 HOH B 6 4008 1013 HOH WAT . I 5 HOH B 7 4009 1014 HOH WAT . I 5 HOH B 8 4010 1015 HOH WAT . I 5 HOH B 9 4011 1019 HOH WAT . I 5 HOH B 10 4012 1020 HOH WAT . I 5 HOH B 11 4013 1021 HOH WAT . I 5 HOH B 12 4014 1022 HOH WAT . I 5 HOH B 13 4015 1023 HOH WAT . I 5 HOH B 14 4016 1024 HOH WAT . I 5 HOH B 15 4017 1026 HOH WAT . I 5 HOH B 16 4018 1028 HOH WAT . I 5 HOH B 17 4019 1032 HOH WAT . I 5 HOH B 18 4020 1034 HOH WAT . I 5 HOH B 19 4021 1035 HOH WAT . I 5 HOH B 20 4022 1043 HOH WAT . I 5 HOH B 21 4023 1046 HOH WAT . I 5 HOH B 22 4024 1048 HOH WAT . I 5 HOH B 23 4025 1049 HOH WAT . I 5 HOH B 24 4026 1051 HOH WAT . I 5 HOH B 25 4027 1053 HOH WAT . I 5 HOH B 26 4028 1054 HOH WAT . I 5 HOH B 27 4029 1058 HOH WAT . I 5 HOH B 28 4030 1059 HOH WAT . I 5 HOH B 29 4031 1060 HOH WAT . I 5 HOH B 30 4032 1062 HOH WAT . I 5 HOH B 31 4033 1063 HOH WAT . I 5 HOH B 32 4034 1065 HOH WAT . I 5 HOH B 33 4035 1068 HOH HOH . I 5 HOH B 34 4036 1069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 F21 . . . F 2 23.741 58.353 -21.953 1 72.86 ? C12 F21 4002 B 1 HETATM 2 C C13 F21 . . . F 2 23.28 57.507 -20.762 1 71.7 ? C13 F21 4002 B 1 HETATM 3 S S2 F21 . . . F 2 24.752 57.238 -19.712 1 69.47 ? S2 F21 4002 B 1 HETATM 4 C C15 F21 . . . F 2 25.435 58.911 -19.437 1 68.85 ? C15 F21 4002 B 1 HETATM 5 C C14 F21 . . . F 2 25.587 59.561 -20.814 1 70.86 ? C14 F21 4002 B 1 HETATM 6 N N1 F21 . . . F 2 24.279 59.643 -21.484 1 71.69 ? N1 F21 4002 B 1 HETATM 7 S S1 F21 . . . F 2 24.397 60.675 -22.739 1 67.19 ? S1 F21 4002 B 1 HETATM 8 O O2 F21 . . . F 2 23.076 60.871 -23.247 1 65.63 ? O2 F21 4002 B 1 HETATM 9 O O1 F21 . . . F 2 24.921 61.973 -22.199 1 67.08 ? O1 F21 4002 B 1 HETATM 10 C C7 F21 . . . F 2 25.403 60.185 -24.092 1 64.4 ? C7 F21 4002 B 1 HETATM 11 C C8 F21 . . . F 2 25.32 60.963 -25.235 1 64.59 ? C8 F21 4002 B 1 HETATM 12 C C9 F21 . . . F 2 26.098 60.675 -26.36 1 67.06 ? C9 F21 4002 B 1 HETATM 13 C C1 F21 . . . F 2 25.971 61.557 -27.598 1 65.37 ? C1 F21 4002 B 1 HETATM 14 N N2 F21 . . . F 2 27.088 61.341 -28.539 1 63.79 ? N2 F21 4002 B 1 HETATM 15 C C3 F21 . . . F 2 27.266 59.904 -28.781 1 68.63 ? C3 F21 4002 B 1 HETATM 16 C C11 F21 . . . F 2 28.2 59.664 -29.97 1 73.65 ? C11 F21 4002 B 1 HETATM 17 F F1 F21 . . . F 2 27.571 60.017 -31.154 1 79.62 ? F1 F21 4002 B 1 HETATM 18 C C4 F21 . . . F 2 27.843 59.244 -27.525 1 68.88 ? C4 F21 4002 B 1 HETATM 19 C C10 F21 . . . F 2 26.965 59.576 -26.309 1 67.09 ? C10 F21 4002 B 1 HETATM 20 C C5 F21 . . . F 2 27.047 58.802 -25.174 1 63.23 ? C5 F21 4002 B 1 HETATM 21 C C6 F21 . . . F 2 26.262 59.1 -24.043 1 65.13 ? C6 F21 4002 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #