data_2OPM # _model_server_result.job_id XnQvVzL0DOQol3Kw5URUjQ _model_server_result.datetime_utc '2024-11-28 13:17:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2opm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 2OPM # _exptl.entry_id 2OPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.111 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OPM _cell.length_a 111.783 _cell.length_b 111.783 _cell.length_c 66.525 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.783 111.783 33.2625 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H11 F N O7 P2 1' _chem_comp.formula_weight 302.111 _chem_comp.id NI9 _chem_comp.mon_nstd_flag . _chem_comp.name 3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 P2 NI9 sing 237 n n C1 O2 NI9 sing 238 n n C1 C2 NI9 sing 239 n n C1 P1 NI9 sing 240 n n O1 P2 NI9 sing 241 n n O1 HO1 NI9 sing 242 n n O2 HO2 NI9 sing 243 n n C2 N NI9 sing 244 n n C2 H21 NI9 sing 245 n n C2 H22 NI9 sing 246 n n O3 P2 NI9 sing 247 n n O3 HO3 NI9 sing 248 n n C3 N NI9 doub 249 n y C3 C7 NI9 sing 250 n y C3 H3 NI9 sing 251 n n P1 O6 NI9 doub 252 n n P1 O7 NI9 sing 253 n n P1 O4 NI9 sing 254 n n P2 O5 NI9 doub 255 n n O4 HO4 NI9 sing 256 n n O7 HO7 NI9 sing 257 n n N C5 NI9 sing 258 n y F C7 NI9 sing 259 n n C4 C7 NI9 doub 260 n y C4 C6 NI9 sing 261 n y C4 H4 NI9 sing 262 n n C5 C6 NI9 doub 263 n y C5 H5 NI9 sing 264 n n C6 H6 NI9 sing 265 n n # _atom_sites.entry_id 2OPM _atom_sites.fract_transf_matrix[1][1] 0.008946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1001 1001 PO4 PO4 . C 2 PO4 A 1 1002 1002 PO4 PO4 . D 3 MG A 1 907 907 MG MG . E 3 MG A 1 908 908 MG MG . F 3 MG A 1 909 909 MG MG . G 4 NI9 A 1 901 901 NI9 NI9 . H 5 HOH A 1 3001 3001 HOH HOH . H 5 HOH A 2 3002 3002 HOH HOH . H 5 HOH A 3 3003 3003 HOH HOH . H 5 HOH A 4 3004 3004 HOH HOH . H 5 HOH A 5 3005 3005 HOH HOH . H 5 HOH A 6 3006 3006 HOH HOH . H 5 HOH A 7 3007 3007 HOH HOH . H 5 HOH A 8 3008 3008 HOH HOH . H 5 HOH A 9 3009 3009 HOH HOH . H 5 HOH A 10 3010 3010 HOH HOH . H 5 HOH A 11 3011 3011 HOH HOH . H 5 HOH A 12 3012 3012 HOH HOH . H 5 HOH A 13 3013 3013 HOH HOH . H 5 HOH A 14 3014 3014 HOH HOH . H 5 HOH A 15 3015 3015 HOH HOH . H 5 HOH A 16 3016 3016 HOH HOH . H 5 HOH A 17 3017 3017 HOH HOH . H 5 HOH A 18 3018 3018 HOH HOH . H 5 HOH A 19 3019 3019 HOH HOH . H 5 HOH A 20 3020 3020 HOH HOH . H 5 HOH A 21 3021 3021 HOH HOH . H 5 HOH A 22 3022 3022 HOH HOH . H 5 HOH A 23 3023 3023 HOH HOH . H 5 HOH A 24 3024 3024 HOH HOH . H 5 HOH A 25 3025 3025 HOH HOH . H 5 HOH A 26 3026 3026 HOH HOH . H 5 HOH A 27 3027 3027 HOH HOH . H 5 HOH A 28 3028 3028 HOH HOH . H 5 HOH A 29 3029 3029 HOH HOH . H 5 HOH A 30 3030 3030 HOH HOH . H 5 HOH A 31 3031 3031 HOH HOH . H 5 HOH A 32 3032 3032 HOH HOH . H 5 HOH A 33 3033 3033 HOH HOH . H 5 HOH A 34 3034 3034 HOH HOH . H 5 HOH A 35 3035 3035 HOH HOH . H 5 HOH A 36 3036 3036 HOH HOH . H 5 HOH A 37 3037 3037 HOH HOH . H 5 HOH A 38 3038 3038 HOH HOH . H 5 HOH A 39 3039 3039 HOH HOH . H 5 HOH A 40 3040 3040 HOH HOH . H 5 HOH A 41 3041 3041 HOH HOH . H 5 HOH A 42 3042 3042 HOH HOH . H 5 HOH A 43 3043 3043 HOH HOH . H 5 HOH A 44 3044 3044 HOH HOH . H 5 HOH A 45 3045 3045 HOH HOH . H 5 HOH A 46 3046 3046 HOH HOH . H 5 HOH A 47 3047 3047 HOH HOH . H 5 HOH A 48 3048 3048 HOH HOH . H 5 HOH A 49 3049 3049 HOH HOH . H 5 HOH A 50 3050 3050 HOH HOH . H 5 HOH A 51 3051 3051 HOH HOH . H 5 HOH A 52 3052 3052 HOH HOH . H 5 HOH A 53 3053 3053 HOH HOH . H 5 HOH A 54 3054 3054 HOH HOH . H 5 HOH A 55 3055 3055 HOH HOH . H 5 HOH A 56 3056 3056 HOH HOH . H 5 HOH A 57 3057 3057 HOH HOH . H 5 HOH A 58 3058 3058 HOH HOH . H 5 HOH A 59 3059 3059 HOH HOH . H 5 HOH A 60 3060 3060 HOH HOH . H 5 HOH A 61 3061 3061 HOH HOH . H 5 HOH A 62 3062 3062 HOH HOH . H 5 HOH A 63 3063 3063 HOH HOH . H 5 HOH A 64 3064 3064 HOH HOH . H 5 HOH A 65 3065 3065 HOH HOH . H 5 HOH A 66 3066 3066 HOH HOH . H 5 HOH A 67 3067 3067 HOH HOH . H 5 HOH A 68 3068 3068 HOH HOH . H 5 HOH A 69 3069 3069 HOH HOH . H 5 HOH A 70 3070 3070 HOH HOH . H 5 HOH A 71 3071 3071 HOH HOH . H 5 HOH A 72 3072 3072 HOH HOH . H 5 HOH A 73 3073 3073 HOH HOH . H 5 HOH A 74 3074 3074 HOH HOH . H 5 HOH A 75 3075 3075 HOH HOH . H 5 HOH A 76 3076 3076 HOH HOH . H 5 HOH A 77 3077 3077 HOH HOH . H 5 HOH A 78 3078 3078 HOH HOH . H 5 HOH A 79 3079 3079 HOH HOH . H 5 HOH A 80 3080 3080 HOH HOH . H 5 HOH A 81 3081 3081 HOH HOH . H 5 HOH A 82 3082 3082 HOH HOH . H 5 HOH A 83 3083 3083 HOH HOH . H 5 HOH A 84 3084 3084 HOH HOH . H 5 HOH A 85 3085 3085 HOH HOH . H 5 HOH A 86 3086 3086 HOH HOH . H 5 HOH A 87 3087 3087 HOH HOH . H 5 HOH A 88 3088 3088 HOH HOH . H 5 HOH A 89 3089 3089 HOH HOH . H 5 HOH A 90 3090 3090 HOH HOH . H 5 HOH A 91 3091 3091 HOH HOH . H 5 HOH A 92 3092 3092 HOH HOH . H 5 HOH A 93 3093 3093 HOH HOH . H 5 HOH A 94 3094 3094 HOH HOH . H 5 HOH A 95 3095 3095 HOH HOH . H 5 HOH A 96 3096 3096 HOH HOH . H 5 HOH A 97 3097 3097 HOH HOH . H 5 HOH A 98 3098 3098 HOH HOH . H 5 HOH A 99 3099 3099 HOH HOH . H 5 HOH A 100 3100 3100 HOH HOH . H 5 HOH A 101 3101 3101 HOH HOH . H 5 HOH A 102 3102 3102 HOH HOH . H 5 HOH A 103 3103 3103 HOH HOH . H 5 HOH A 104 3104 3104 HOH HOH . H 5 HOH A 105 3105 3105 HOH HOH . H 5 HOH A 106 3106 3106 HOH HOH . H 5 HOH A 107 3107 3107 HOH HOH . H 5 HOH A 108 3108 3108 HOH HOH . H 5 HOH A 109 3109 3109 HOH HOH . H 5 HOH A 110 3110 3110 HOH HOH . H 5 HOH A 111 3111 3111 HOH HOH . H 5 HOH A 112 3112 3112 HOH HOH . H 5 HOH A 113 3113 3113 HOH HOH . H 5 HOH A 114 3114 3114 HOH HOH . H 5 HOH A 115 3115 3115 HOH HOH . H 5 HOH A 116 3116 3116 HOH HOH . H 5 HOH A 117 3117 3117 HOH HOH . H 5 HOH A 118 3118 3118 HOH HOH . H 5 HOH A 119 3119 3119 HOH HOH . H 5 HOH A 120 3120 3120 HOH HOH . H 5 HOH A 121 3121 3121 HOH HOH . H 5 HOH A 122 3122 3122 HOH HOH . H 5 HOH A 123 3123 3123 HOH HOH . H 5 HOH A 124 3124 3124 HOH HOH . H 5 HOH A 125 3125 3125 HOH HOH . H 5 HOH A 126 3126 3126 HOH HOH . H 5 HOH A 127 3127 3127 HOH HOH . H 5 HOH A 128 3128 3128 HOH HOH . H 5 HOH A 129 3129 3129 HOH HOH . H 5 HOH A 130 3130 3130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NI9 . . . G 4 14.789 77.627 25.262 1 74.49 ? C1 NI9 901 A 1 HETATM 2 O O1 NI9 . . . G 4 14.449 76.849 22.862 1 77.91 ? O1 NI9 901 A 1 HETATM 3 O O2 NI9 . . . G 4 13.683 77.337 26.201 1 65.75 ? O2 NI9 901 A 1 HETATM 4 C C2 NI9 . . . G 4 14.361 78.699 24.193 1 73.45 ? C2 NI9 901 A 1 HETATM 5 O O3 NI9 . . . G 4 16.521 75.929 23.946 1 77.06 ? O3 NI9 901 A 1 HETATM 6 C C3 NI9 . . . G 4 15.286 80.974 24.053 1 72.35 ? C3 NI9 901 A 1 HETATM 7 P P1 NI9 . . . G 4 16.309 78.166 26.262 1 77.83 ? P1 NI9 901 A 1 HETATM 8 P P2 NI9 . . . G 4 15.025 76.2 24.1 1 75.78 ? P2 NI9 901 A 1 HETATM 9 O O4 NI9 . . . G 4 15.959 79.469 27.002 1 65.58 ? O4 NI9 901 A 1 HETATM 10 O O5 NI9 . . . G 4 14.3 74.945 24.563 1 75.9 ? O5 NI9 901 A 1 HETATM 11 O O6 NI9 . . . G 4 16.496 76.983 27.234 1 79.73 ? O6 NI9 901 A 1 HETATM 12 O O7 NI9 . . . G 4 17.542 78.354 25.333 1 70.57 ? O7 NI9 901 A 1 HETATM 13 N N NI9 . . . G 4 14.45 80.11 24.67 1 73.65 ? N NI9 901 A 1 HETATM 14 F F NI9 . . . G 4 16.227 83.175 23.89 1 63.22 ? F NI9 901 A 1 HETATM 15 C C4 NI9 . . . G 4 14.627 82.661 25.529 1 64.95 ? C4 NI9 901 A 1 HETATM 16 C C5 NI9 . . . G 4 13.679 80.47 25.726 1 69.24 ? C5 NI9 901 A 1 HETATM 17 C C6 NI9 . . . G 4 13.758 81.776 26.155 1 65.42 ? C6 NI9 901 A 1 HETATM 18 C C7 NI9 . . . G 4 15.391 82.289 24.458 1 68.12 ? C7 NI9 901 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #