data_2OPN
#
_model_server_result.job_id            NYSCcn8vcFvuXcz9uESmpw 
_model_server_result.datetime_utc      '2024-11-29 11:46:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2opn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":901}' 
#
_entry.id    2OPN 
#
_exptl.entry_id    2OPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              268.162 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-(DIMETHYL-LAMBDA~4~-SULFANYL)-1-HYDROXYETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OPN 
_cell.length_a            111.652 
_cell.length_b            111.652 
_cell.length_c            66.841 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.652 111.652 33.4205 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 124 A ASP 117 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc2 A OD1 ASP 128 A ASP 121 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc3 A OD2 ASP 128 A ASP 121 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? 
metalc ? metalc4 A OD2 ASP 264 A ASP 257 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc5 G O1 SUF . A SUF 901 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc6 G O4 SUF . A SUF 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc7 G O7 SUF . A SUF 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? 
metalc ? metalc8 G O1 SUF . A SUF 901 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc9 G O3 SUF . A SUF 901 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc10 B MG MG . A MG 907 1_555 H O HOH . A HOH 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? 
metalc ? metalc11 D MG MG . A MG 909 1_555 H O HOH . A HOH 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C4 H14 O7 P2 S' 
_chem_comp.formula_weight    268.162 
_chem_comp.id                SUF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-(DIMETHYL-LAMBDA~4~-SULFANYL)-1-HYDROXYETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O6 SUF doub 294 n n 
P1 O4 SUF sing 295 n n 
P1 O5 SUF sing 296 n n 
P1 C1 SUF sing 297 n n 
P2 C1 SUF sing 298 n n 
P2 O7 SUF doub 299 n n 
P2 O1 SUF sing 300 n n 
P2 O3 SUF sing 301 n n 
S C2 SUF sing 302 n n 
S C4 SUF sing 303 n n 
S C3 SUF sing 304 n n 
S HS SUF sing 305 n n 
O1 HO1 SUF sing 306 n n 
O2 C1 SUF sing 307 n n 
O2 HO2 SUF sing 308 n n 
O3 HO3 SUF sing 309 n n 
O4 HO4 SUF sing 310 n n 
O5 HO5 SUF sing 311 n n 
C1 C2 SUF sing 312 n n 
C2 H21 SUF sing 313 n n 
C2 H22 SUF sing 314 n n 
C3 H31 SUF sing 315 n n 
C3 H32 SUF sing 316 n n 
C3 H33 SUF sing 317 n n 
C4 H41 SUF sing 318 n n 
C4 H42 SUF sing 319 n n 
C4 H43 SUF sing 320 n n 
#
_atom_sites.entry_id                     2OPN 
_atom_sites.fract_transf_matrix[1][1]    0.008956 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008956 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014961 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 907 907 MG MG . 
C 2 MG A 1 908 908 MG MG . 
D 2 MG A 1 909 909 MG MG . 
E 3 PO4 A 1 1001 1001 PO4 PO4 . 
F 3 PO4 A 1 1002 1002 PO4 PO4 . 
G 4 SUF A 1 901 901 SUF SUF . 
H 5 HOH A 1 1003 2001 HOH HOH . 
H 5 HOH A 2 1004 2002 HOH HOH . 
H 5 HOH A 3 1005 2003 HOH HOH . 
H 5 HOH A 4 1006 2004 HOH HOH . 
H 5 HOH A 5 1007 2005 HOH HOH . 
H 5 HOH A 6 1008 2006 HOH HOH . 
H 5 HOH A 7 1009 2007 HOH HOH . 
H 5 HOH A 8 1010 2008 HOH HOH . 
H 5 HOH A 9 1011 2009 HOH HOH . 
H 5 HOH A 10 1012 2010 HOH HOH . 
H 5 HOH A 11 1013 2011 HOH HOH . 
H 5 HOH A 12 1014 2012 HOH HOH . 
H 5 HOH A 13 1015 2013 HOH HOH . 
H 5 HOH A 14 1016 2014 HOH HOH . 
H 5 HOH A 15 1017 2015 HOH HOH . 
H 5 HOH A 16 1018 2016 HOH HOH . 
H 5 HOH A 17 1019 2017 HOH HOH . 
H 5 HOH A 18 1020 2018 HOH HOH . 
H 5 HOH A 19 1021 2019 HOH HOH . 
H 5 HOH A 20 1022 2020 HOH HOH . 
H 5 HOH A 21 1023 2021 HOH HOH . 
H 5 HOH A 22 1024 2022 HOH HOH . 
H 5 HOH A 23 1025 2023 HOH HOH . 
H 5 HOH A 24 1026 2024 HOH HOH . 
H 5 HOH A 25 1027 2025 HOH HOH . 
H 5 HOH A 26 1028 2026 HOH HOH . 
H 5 HOH A 27 1029 2027 HOH HOH . 
H 5 HOH A 28 1030 2028 HOH HOH . 
H 5 HOH A 29 1031 2029 HOH HOH . 
H 5 HOH A 30 1032 2030 HOH HOH . 
H 5 HOH A 31 1033 2031 HOH HOH . 
H 5 HOH A 32 1034 2032 HOH HOH . 
H 5 HOH A 33 1035 2033 HOH HOH . 
H 5 HOH A 34 1036 2034 HOH HOH . 
H 5 HOH A 35 1037 2035 HOH HOH . 
H 5 HOH A 36 1038 2036 HOH HOH . 
H 5 HOH A 37 1039 2037 HOH HOH . 
H 5 HOH A 38 1040 2038 HOH HOH . 
H 5 HOH A 39 1041 2039 HOH HOH . 
H 5 HOH A 40 1042 2040 HOH HOH . 
H 5 HOH A 41 1043 2041 HOH HOH . 
H 5 HOH A 42 1044 2042 HOH HOH . 
H 5 HOH A 43 1045 2043 HOH HOH . 
H 5 HOH A 44 1046 2044 HOH HOH . 
H 5 HOH A 45 1047 2045 HOH HOH . 
H 5 HOH A 46 1048 2046 HOH HOH . 
H 5 HOH A 47 1049 2047 HOH HOH . 
H 5 HOH A 48 1050 2048 HOH HOH . 
H 5 HOH A 49 1051 2049 HOH HOH . 
H 5 HOH A 50 1052 2050 HOH HOH . 
H 5 HOH A 51 1053 2051 HOH HOH . 
H 5 HOH A 52 1054 2052 HOH HOH . 
H 5 HOH A 53 1055 2053 HOH HOH . 
H 5 HOH A 54 1056 2054 HOH HOH . 
H 5 HOH A 55 1057 2055 HOH HOH . 
H 5 HOH A 56 1058 2056 HOH HOH . 
H 5 HOH A 57 1059 2057 HOH HOH . 
H 5 HOH A 58 1060 2058 HOH HOH . 
H 5 HOH A 59 1061 2059 HOH HOH . 
H 5 HOH A 60 1062 2060 HOH HOH . 
H 5 HOH A 61 1063 2061 HOH HOH . 
H 5 HOH A 62 1064 2062 HOH HOH . 
H 5 HOH A 63 1065 2063 HOH HOH . 
H 5 HOH A 64 1066 2064 HOH HOH . 
H 5 HOH A 65 1067 2065 HOH HOH . 
H 5 HOH A 66 1068 2066 HOH HOH . 
H 5 HOH A 67 1069 2067 HOH HOH . 
H 5 HOH A 68 1070 2068 HOH HOH . 
H 5 HOH A 69 1071 2069 HOH HOH . 
H 5 HOH A 70 1072 2070 HOH HOH . 
H 5 HOH A 71 1073 2071 HOH HOH . 
H 5 HOH A 72 1074 2072 HOH HOH . 
H 5 HOH A 73 1075 2073 HOH HOH . 
H 5 HOH A 74 1076 2074 HOH HOH . 
H 5 HOH A 75 1077 2075 HOH HOH . 
H 5 HOH A 76 1078 2076 HOH HOH . 
H 5 HOH A 77 1079 2077 HOH HOH . 
H 5 HOH A 78 1080 2078 HOH HOH . 
H 5 HOH A 79 1081 2079 HOH HOH . 
H 5 HOH A 80 1082 2080 HOH HOH . 
H 5 HOH A 81 1083 2081 HOH HOH . 
H 5 HOH A 82 1084 2082 HOH HOH . 
H 5 HOH A 83 1085 2083 HOH HOH . 
H 5 HOH A 84 1086 2084 HOH HOH . 
H 5 HOH A 85 1087 2085 HOH HOH . 
H 5 HOH A 86 1088 2086 HOH HOH . 
H 5 HOH A 87 1089 2087 HOH HOH . 
H 5 HOH A 88 1090 2088 HOH HOH . 
H 5 HOH A 89 1091 2089 HOH HOH . 
H 5 HOH A 90 1092 2090 HOH HOH . 
H 5 HOH A 91 1093 2091 HOH HOH . 
H 5 HOH A 92 1094 2092 HOH HOH . 
H 5 HOH A 93 1095 2093 HOH HOH . 
H 5 HOH A 94 1096 2094 HOH HOH . 
H 5 HOH A 95 1097 2095 HOH HOH . 
H 5 HOH A 96 1098 2096 HOH HOH . 
H 5 HOH A 97 1099 2097 HOH HOH . 
H 5 HOH A 98 1100 2098 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 SUF . . . G 4 14.661 76.761 25.02 0.78 66.29 ? P1 SUF 901 A 1 
HETATM 2 P P2 SUF . . . G 4 16.905 77.912 26.658 0.78 68.14 ? P2 SUF 901 A 1 
HETATM 3 S S SUF . . . G 4 14.334 80.485 24.795 0.78 69.22 ? S SUF 901 A 1 
HETATM 4 O O1 SUF . . . G 4 17.962 77.733 25.596 0.78 70.26 ? O1 SUF 901 A 1 
HETATM 5 O O2 SUF . . . G 4 14.499 78.682 26.76 0.78 50.36 ? O2 SUF 901 A 1 
HETATM 6 O O3 SUF . . . G 4 16.969 79.237 27.374 0.78 70.23 ? O3 SUF 901 A 1 
HETATM 7 O O4 SUF . . . G 4 15.692 75.695 25.124 0.78 68.71 ? O4 SUF 901 A 1 
HETATM 8 O O5 SUF . . . G 4 14.379 77.196 23.635 0.78 74.59 ? O5 SUF 901 A 1 
HETATM 9 C C1 SUF . . . G 4 15.379 78.222 25.77 0.78 67.52 ? C1 SUF 901 A 1 
HETATM 10 O O6 SUF . . . G 4 13.477 76.386 25.826 0.78 63.7 ? O6 SUF 901 A 1 
HETATM 11 C C2 SUF . . . G 4 15.553 79.351 24.774 0.78 69.83 ? C2 SUF 901 A 1 
HETATM 12 O O7 SUF . . . G 4 16.773 76.755 27.558 0.78 56.9 ? O7 SUF 901 A 1 
HETATM 13 C C3 SUF . . . G 4 14.432 81.6 26.003 0.78 56.07 ? C3 SUF 901 A 1 
HETATM 14 C C4 SUF . . . G 4 12.881 79.72 24.733 0.78 62.04 ? C4 SUF 901 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#