data_2OPN # _model_server_result.job_id yzO62KK3S7C7e8vtKr-m1g _model_server_result.datetime_utc '2024-12-01 17:59:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2opn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":909}' # _entry.id 2OPN # _exptl.entry_id 2OPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OPN _cell.length_a 111.652 _cell.length_b 111.652 _cell.length_c 66.841 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.652 111.652 33.4205 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 124 A ASP 117 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc2 A OD1 ASP 128 A ASP 121 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc3 A OD2 ASP 128 A ASP 121 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? metalc ? metalc4 A OD2 ASP 264 A ASP 257 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 G O1 SUF . A SUF 901 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc6 G O4 SUF . A SUF 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc7 G O7 SUF . A SUF 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc8 G O1 SUF . A SUF 901 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc9 G O3 SUF . A SUF 901 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc10 B MG MG . A MG 907 1_555 H O HOH . A HOH 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc11 D MG MG . A MG 909 1_555 H O HOH . A HOH 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2OPN _atom_sites.fract_transf_matrix[1][1] 0.008956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 907 907 MG MG . C 2 MG A 1 908 908 MG MG . D 2 MG A 1 909 909 MG MG . E 3 PO4 A 1 1001 1001 PO4 PO4 . F 3 PO4 A 1 1002 1002 PO4 PO4 . G 4 SUF A 1 901 901 SUF SUF . H 5 HOH A 1 1003 2001 HOH HOH . H 5 HOH A 2 1004 2002 HOH HOH . H 5 HOH A 3 1005 2003 HOH HOH . H 5 HOH A 4 1006 2004 HOH HOH . H 5 HOH A 5 1007 2005 HOH HOH . H 5 HOH A 6 1008 2006 HOH HOH . H 5 HOH A 7 1009 2007 HOH HOH . H 5 HOH A 8 1010 2008 HOH HOH . H 5 HOH A 9 1011 2009 HOH HOH . H 5 HOH A 10 1012 2010 HOH HOH . H 5 HOH A 11 1013 2011 HOH HOH . H 5 HOH A 12 1014 2012 HOH HOH . H 5 HOH A 13 1015 2013 HOH HOH . H 5 HOH A 14 1016 2014 HOH HOH . H 5 HOH A 15 1017 2015 HOH HOH . H 5 HOH A 16 1018 2016 HOH HOH . H 5 HOH A 17 1019 2017 HOH HOH . H 5 HOH A 18 1020 2018 HOH HOH . H 5 HOH A 19 1021 2019 HOH HOH . H 5 HOH A 20 1022 2020 HOH HOH . H 5 HOH A 21 1023 2021 HOH HOH . H 5 HOH A 22 1024 2022 HOH HOH . H 5 HOH A 23 1025 2023 HOH HOH . H 5 HOH A 24 1026 2024 HOH HOH . H 5 HOH A 25 1027 2025 HOH HOH . H 5 HOH A 26 1028 2026 HOH HOH . H 5 HOH A 27 1029 2027 HOH HOH . H 5 HOH A 28 1030 2028 HOH HOH . H 5 HOH A 29 1031 2029 HOH HOH . H 5 HOH A 30 1032 2030 HOH HOH . H 5 HOH A 31 1033 2031 HOH HOH . H 5 HOH A 32 1034 2032 HOH HOH . H 5 HOH A 33 1035 2033 HOH HOH . H 5 HOH A 34 1036 2034 HOH HOH . H 5 HOH A 35 1037 2035 HOH HOH . H 5 HOH A 36 1038 2036 HOH HOH . H 5 HOH A 37 1039 2037 HOH HOH . H 5 HOH A 38 1040 2038 HOH HOH . H 5 HOH A 39 1041 2039 HOH HOH . H 5 HOH A 40 1042 2040 HOH HOH . H 5 HOH A 41 1043 2041 HOH HOH . H 5 HOH A 42 1044 2042 HOH HOH . H 5 HOH A 43 1045 2043 HOH HOH . H 5 HOH A 44 1046 2044 HOH HOH . H 5 HOH A 45 1047 2045 HOH HOH . H 5 HOH A 46 1048 2046 HOH HOH . H 5 HOH A 47 1049 2047 HOH HOH . H 5 HOH A 48 1050 2048 HOH HOH . H 5 HOH A 49 1051 2049 HOH HOH . H 5 HOH A 50 1052 2050 HOH HOH . H 5 HOH A 51 1053 2051 HOH HOH . H 5 HOH A 52 1054 2052 HOH HOH . H 5 HOH A 53 1055 2053 HOH HOH . H 5 HOH A 54 1056 2054 HOH HOH . H 5 HOH A 55 1057 2055 HOH HOH . H 5 HOH A 56 1058 2056 HOH HOH . H 5 HOH A 57 1059 2057 HOH HOH . H 5 HOH A 58 1060 2058 HOH HOH . H 5 HOH A 59 1061 2059 HOH HOH . H 5 HOH A 60 1062 2060 HOH HOH . H 5 HOH A 61 1063 2061 HOH HOH . H 5 HOH A 62 1064 2062 HOH HOH . H 5 HOH A 63 1065 2063 HOH HOH . H 5 HOH A 64 1066 2064 HOH HOH . H 5 HOH A 65 1067 2065 HOH HOH . H 5 HOH A 66 1068 2066 HOH HOH . H 5 HOH A 67 1069 2067 HOH HOH . H 5 HOH A 68 1070 2068 HOH HOH . H 5 HOH A 69 1071 2069 HOH HOH . H 5 HOH A 70 1072 2070 HOH HOH . H 5 HOH A 71 1073 2071 HOH HOH . H 5 HOH A 72 1074 2072 HOH HOH . H 5 HOH A 73 1075 2073 HOH HOH . H 5 HOH A 74 1076 2074 HOH HOH . H 5 HOH A 75 1077 2075 HOH HOH . H 5 HOH A 76 1078 2076 HOH HOH . H 5 HOH A 77 1079 2077 HOH HOH . H 5 HOH A 78 1080 2078 HOH HOH . H 5 HOH A 79 1081 2079 HOH HOH . H 5 HOH A 80 1082 2080 HOH HOH . H 5 HOH A 81 1083 2081 HOH HOH . H 5 HOH A 82 1084 2082 HOH HOH . H 5 HOH A 83 1085 2083 HOH HOH . H 5 HOH A 84 1086 2084 HOH HOH . H 5 HOH A 85 1087 2085 HOH HOH . H 5 HOH A 86 1088 2086 HOH HOH . H 5 HOH A 87 1089 2087 HOH HOH . H 5 HOH A 88 1090 2088 HOH HOH . H 5 HOH A 89 1091 2089 HOH HOH . H 5 HOH A 90 1092 2090 HOH HOH . H 5 HOH A 91 1093 2091 HOH HOH . H 5 HOH A 92 1094 2092 HOH HOH . H 5 HOH A 93 1095 2093 HOH HOH . H 5 HOH A 94 1096 2094 HOH HOH . H 5 HOH A 95 1097 2095 HOH HOH . H 5 HOH A 96 1098 2096 HOH HOH . H 5 HOH A 97 1099 2097 HOH HOH . H 5 HOH A 98 1100 2098 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.208 _atom_site.Cartn_y 79.24 _atom_site.Cartn_z 26.123 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 909 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1100 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #