data_2OQ5 # _model_server_result.job_id O4N3xANsiZRJadZnBjQ4wQ _model_server_result.datetime_utc '2025-03-02 05:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":245}' # _entry.id 2OQ5 # _exptl.entry_id 2OQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OQ5 _cell.length_a 47.9 _cell.length_b 70.2 _cell.length_c 80.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 151 A CYS 168 1_555 A SG CYS 167 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 178 A CYS 191 1_555 A SG CYS 207 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 2OQ5 _atom_sites.fract_transf_matrix[1][1] 0.020877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 245 1 BEN BEN . C 3 HOH A 1 246 1 HOH WAT . C 3 HOH A 2 247 2 HOH WAT . C 3 HOH A 3 248 3 HOH WAT . C 3 HOH A 4 249 4 HOH WAT . C 3 HOH A 5 250 5 HOH WAT . C 3 HOH A 6 251 7 HOH WAT . C 3 HOH A 7 252 8 HOH WAT . C 3 HOH A 8 253 9 HOH WAT . C 3 HOH A 9 254 10 HOH WAT . C 3 HOH A 10 255 11 HOH WAT . C 3 HOH A 11 256 12 HOH WAT . C 3 HOH A 12 257 13 HOH WAT . C 3 HOH A 13 258 14 HOH WAT . C 3 HOH A 14 259 15 HOH WAT . C 3 HOH A 15 260 16 HOH WAT . C 3 HOH A 16 261 17 HOH WAT . C 3 HOH A 17 262 18 HOH WAT . C 3 HOH A 18 263 19 HOH WAT . C 3 HOH A 19 264 20 HOH WAT . C 3 HOH A 20 265 22 HOH WAT . C 3 HOH A 21 266 23 HOH WAT . C 3 HOH A 22 267 24 HOH WAT . C 3 HOH A 23 268 25 HOH WAT . C 3 HOH A 24 269 26 HOH WAT . C 3 HOH A 25 270 27 HOH WAT . C 3 HOH A 26 271 28 HOH WAT . C 3 HOH A 27 272 29 HOH WAT . C 3 HOH A 28 273 30 HOH WAT . C 3 HOH A 29 274 31 HOH WAT . C 3 HOH A 30 275 32 HOH WAT . C 3 HOH A 31 276 33 HOH WAT . C 3 HOH A 32 277 34 HOH WAT . C 3 HOH A 33 278 35 HOH WAT . C 3 HOH A 34 279 36 HOH WAT . C 3 HOH A 35 280 37 HOH WAT . C 3 HOH A 36 281 38 HOH WAT . C 3 HOH A 37 282 39 HOH WAT . C 3 HOH A 38 283 40 HOH WAT . C 3 HOH A 39 284 41 HOH WAT . C 3 HOH A 40 285 43 HOH WAT . C 3 HOH A 41 286 44 HOH WAT . C 3 HOH A 42 287 45 HOH WAT . C 3 HOH A 43 288 46 HOH WAT . C 3 HOH A 44 289 47 HOH WAT . C 3 HOH A 45 290 48 HOH WAT . C 3 HOH A 46 291 49 HOH WAT . C 3 HOH A 47 292 50 HOH WAT . C 3 HOH A 48 293 51 HOH WAT . C 3 HOH A 49 294 52 HOH WAT . C 3 HOH A 50 295 53 HOH WAT . C 3 HOH A 51 296 54 HOH WAT . C 3 HOH A 52 297 55 HOH WAT . C 3 HOH A 53 298 56 HOH WAT . C 3 HOH A 54 299 57 HOH WAT . C 3 HOH A 55 300 58 HOH WAT . C 3 HOH A 56 301 59 HOH WAT . C 3 HOH A 57 302 60 HOH WAT . C 3 HOH A 58 303 61 HOH WAT . C 3 HOH A 59 304 62 HOH WAT . C 3 HOH A 60 305 63 HOH WAT . C 3 HOH A 61 306 64 HOH WAT . C 3 HOH A 62 307 65 HOH WAT . C 3 HOH A 63 308 66 HOH WAT . C 3 HOH A 64 309 67 HOH WAT . C 3 HOH A 65 310 68 HOH WAT . C 3 HOH A 66 311 69 HOH WAT . C 3 HOH A 67 312 70 HOH WAT . C 3 HOH A 68 313 71 HOH WAT . C 3 HOH A 69 314 72 HOH WAT . C 3 HOH A 70 315 74 HOH WAT . C 3 HOH A 71 316 75 HOH WAT . C 3 HOH A 72 317 76 HOH WAT . C 3 HOH A 73 318 77 HOH WAT . C 3 HOH A 74 319 78 HOH WAT . C 3 HOH A 75 320 79 HOH WAT . C 3 HOH A 76 321 80 HOH WAT . C 3 HOH A 77 322 81 HOH WAT . C 3 HOH A 78 323 82 HOH WAT . C 3 HOH A 79 324 83 HOH WAT . C 3 HOH A 80 325 84 HOH WAT . C 3 HOH A 81 326 85 HOH WAT . C 3 HOH A 82 327 86 HOH WAT . C 3 HOH A 83 328 87 HOH WAT . C 3 HOH A 84 329 88 HOH WAT . C 3 HOH A 85 330 89 HOH WAT . C 3 HOH A 86 331 90 HOH WAT . C 3 HOH A 87 332 91 HOH WAT . C 3 HOH A 88 333 92 HOH WAT . C 3 HOH A 89 334 93 HOH WAT . C 3 HOH A 90 335 94 HOH WAT . C 3 HOH A 91 336 95 HOH WAT . C 3 HOH A 92 337 96 HOH WAT . C 3 HOH A 93 338 97 HOH WAT . C 3 HOH A 94 339 98 HOH WAT . C 3 HOH A 95 340 99 HOH WAT . C 3 HOH A 96 341 100 HOH WAT . C 3 HOH A 97 342 101 HOH WAT . C 3 HOH A 98 343 102 HOH WAT . C 3 HOH A 99 344 103 HOH WAT . C 3 HOH A 100 345 104 HOH WAT . C 3 HOH A 101 346 105 HOH WAT . C 3 HOH A 102 347 106 HOH WAT . C 3 HOH A 103 348 107 HOH WAT . C 3 HOH A 104 349 108 HOH WAT . C 3 HOH A 105 350 109 HOH WAT . C 3 HOH A 106 351 110 HOH WAT . C 3 HOH A 107 352 111 HOH WAT . C 3 HOH A 108 353 112 HOH WAT . C 3 HOH A 109 354 113 HOH WAT . C 3 HOH A 110 355 114 HOH WAT . C 3 HOH A 111 356 115 HOH WAT . C 3 HOH A 112 357 116 HOH WAT . C 3 HOH A 113 358 117 HOH WAT . C 3 HOH A 114 359 118 HOH WAT . C 3 HOH A 115 360 119 HOH WAT . C 3 HOH A 116 361 120 HOH WAT . C 3 HOH A 117 362 121 HOH WAT . C 3 HOH A 118 363 122 HOH WAT . C 3 HOH A 119 364 123 HOH WAT . C 3 HOH A 120 365 124 HOH WAT . C 3 HOH A 121 366 125 HOH WAT . C 3 HOH A 122 367 126 HOH WAT . C 3 HOH A 123 368 127 HOH WAT . C 3 HOH A 124 369 128 HOH WAT . C 3 HOH A 125 370 129 HOH WAT . C 3 HOH A 126 371 130 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . B 2 -7.1 22.9 23.041 1 23.02 ? C1 BEN 245 A 1 HETATM 2 C C2 BEN . . . B 2 -6.071 22.603 22.115 1 24.17 ? C2 BEN 245 A 1 HETATM 3 C C3 BEN . . . B 2 -5.109 23.574 21.759 1 24.19 ? C3 BEN 245 A 1 HETATM 4 C C4 BEN . . . B 2 -5.154 24.863 22.324 1 23.6 ? C4 BEN 245 A 1 HETATM 5 C C5 BEN . . . B 2 -6.172 25.176 23.247 1 25.57 ? C5 BEN 245 A 1 HETATM 6 C C6 BEN . . . B 2 -7.134 24.206 23.603 1 25.14 ? C6 BEN 245 A 1 HETATM 7 C C BEN . . . B 2 -8.067 21.912 23.401 1 21.41 ? C BEN 245 A 1 HETATM 8 N N1 BEN . . . B 2 -9.024 22.13 24.327 1 21.13 ? N1 BEN 245 A 1 HETATM 9 N N2 BEN . . . B 2 -8.095 20.675 22.847 1 17.49 ? N2 BEN 245 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #