data_2OQ7 # _model_server_result.job_id tCt0XIxWTZelL3IxQLXMNw _model_server_result.datetime_utc '2024-11-25 00:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 2OQ7 # _exptl.entry_id 2OQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OQ7 _cell.length_a 101.12 _cell.length_b 148.531 _cell.length_c 57.333 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 210 A HIS 188 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 A OE1 GLU 212 A GLU 190 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 A SG CYS 256 A CYS 234 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A NE2 HIS 262 A HIS 240 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 A NE2 HIS 298 A HIS 276 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 A SG CYS 328 A CYS 306 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 A SG CYS 330 A CYS 308 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc8 C NI NI . A NI 501 1_555 E O2 OGA . A OGA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 C NI NI . A NI 501 1_555 E O2' OGA . A OGA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc10 C NI NI . A NI 501 1_555 I O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc11 B NE2 HIS 210 B HIS 188 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 B OE1 GLU 212 B GLU 190 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 B SG CYS 256 B CYS 234 1_555 G ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc14 B NE2 HIS 262 B HIS 240 1_555 G ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 B NE2 HIS 298 B HIS 276 1_555 F NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc16 B SG CYS 328 B CYS 306 1_555 G ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc17 B SG CYS 330 B CYS 308 1_555 G ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc18 F NI NI . B NI 501 1_555 H O2 OGA . B OGA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc19 F NI NI . B NI 501 1_555 H O2' OGA . B OGA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc20 F NI NI . B NI 501 1_555 J O HOH . B HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2OQ7 _atom_sites.fract_transf_matrix[1][1] 0.009889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 501 501 NI NI . D 3 ZN A 1 502 502 ZN ZN . E 4 OGA A 1 601 500 OGA OGA . F 2 NI B 1 501 501 NI NI . G 3 ZN B 1 502 502 ZN ZN . H 4 OGA B 1 601 500 OGA OGA . I 5 HOH A 1 602 1 HOH HOH . I 5 HOH A 2 603 3 HOH HOH . I 5 HOH A 3 604 8 HOH HOH . I 5 HOH A 4 605 10 HOH HOH . I 5 HOH A 5 606 13 HOH HOH . I 5 HOH A 6 607 17 HOH HOH . I 5 HOH A 7 608 20 HOH HOH . I 5 HOH A 8 609 21 HOH HOH . I 5 HOH A 9 610 22 HOH HOH . I 5 HOH A 10 611 28 HOH HOH . I 5 HOH A 11 612 29 HOH HOH . I 5 HOH A 12 613 31 HOH HOH . I 5 HOH A 13 614 33 HOH HOH . I 5 HOH A 14 615 34 HOH HOH . I 5 HOH A 15 616 35 HOH HOH . I 5 HOH A 16 617 36 HOH HOH . I 5 HOH A 17 618 37 HOH HOH . I 5 HOH A 18 619 42 HOH HOH . I 5 HOH A 19 620 43 HOH HOH . I 5 HOH A 20 621 44 HOH HOH . I 5 HOH A 21 622 46 HOH HOH . I 5 HOH A 22 623 52 HOH HOH . I 5 HOH A 23 624 53 HOH HOH . I 5 HOH A 24 625 54 HOH HOH . I 5 HOH A 25 626 58 HOH HOH . I 5 HOH A 26 627 59 HOH HOH . I 5 HOH A 27 628 62 HOH HOH . I 5 HOH A 28 629 66 HOH HOH . I 5 HOH A 29 630 67 HOH HOH . I 5 HOH A 30 631 69 HOH HOH . I 5 HOH A 31 632 70 HOH HOH . I 5 HOH A 32 633 75 HOH HOH . I 5 HOH A 33 634 77 HOH HOH . I 5 HOH A 34 635 86 HOH HOH . I 5 HOH A 35 636 89 HOH HOH . I 5 HOH A 36 637 92 HOH HOH . I 5 HOH A 37 638 94 HOH HOH . I 5 HOH A 38 639 95 HOH HOH . I 5 HOH A 39 640 100 HOH HOH . I 5 HOH A 40 641 104 HOH HOH . I 5 HOH A 41 642 105 HOH HOH . I 5 HOH A 42 643 109 HOH HOH . I 5 HOH A 43 644 110 HOH HOH . I 5 HOH A 44 645 111 HOH HOH . I 5 HOH A 45 646 112 HOH HOH . I 5 HOH A 46 647 123 HOH HOH . I 5 HOH A 47 648 125 HOH HOH . I 5 HOH A 48 649 127 HOH HOH . I 5 HOH A 49 650 130 HOH HOH . I 5 HOH A 50 651 140 HOH HOH . I 5 HOH A 51 652 141 HOH HOH . I 5 HOH A 52 653 142 HOH HOH . I 5 HOH A 53 654 143 HOH HOH . I 5 HOH A 54 655 144 HOH HOH . I 5 HOH A 55 656 145 HOH HOH . I 5 HOH A 56 657 148 HOH HOH . I 5 HOH A 57 658 153 HOH HOH . I 5 HOH A 58 659 159 HOH HOH . I 5 HOH A 59 660 161 HOH HOH . I 5 HOH A 60 661 162 HOH HOH . I 5 HOH A 61 662 163 HOH HOH . I 5 HOH A 62 663 164 HOH HOH . I 5 HOH A 63 664 165 HOH HOH . I 5 HOH A 64 665 166 HOH HOH . I 5 HOH A 65 666 167 HOH HOH . I 5 HOH A 66 667 168 HOH HOH . I 5 HOH A 67 668 169 HOH HOH . I 5 HOH A 68 669 170 HOH HOH . I 5 HOH A 69 670 171 HOH HOH . I 5 HOH A 70 671 173 HOH HOH . I 5 HOH A 71 672 178 HOH HOH . I 5 HOH A 72 673 180 HOH HOH . I 5 HOH A 73 674 182 HOH HOH . I 5 HOH A 74 675 186 HOH HOH . I 5 HOH A 75 676 193 HOH HOH . I 5 HOH A 76 677 197 HOH HOH . I 5 HOH A 77 678 199 HOH HOH . I 5 HOH A 78 679 201 HOH HOH . I 5 HOH A 79 680 204 HOH HOH . I 5 HOH A 80 681 206 HOH HOH . I 5 HOH A 81 682 211 HOH HOH . I 5 HOH A 82 683 212 HOH HOH . I 5 HOH A 83 684 214 HOH HOH . I 5 HOH A 84 685 222 HOH HOH . I 5 HOH A 85 686 223 HOH HOH . I 5 HOH A 86 687 230 HOH HOH . I 5 HOH A 87 688 231 HOH HOH . I 5 HOH A 88 689 232 HOH HOH . I 5 HOH A 89 690 239 HOH HOH . I 5 HOH A 90 691 241 HOH HOH . I 5 HOH A 91 692 247 HOH HOH . I 5 HOH A 92 693 271 HOH HOH . J 5 HOH B 1 602 2 HOH HOH . J 5 HOH B 2 603 4 HOH HOH . J 5 HOH B 3 604 6 HOH HOH . J 5 HOH B 4 605 7 HOH HOH . J 5 HOH B 5 606 9 HOH HOH . J 5 HOH B 6 607 11 HOH HOH . J 5 HOH B 7 608 12 HOH HOH . J 5 HOH B 8 609 14 HOH HOH . J 5 HOH B 9 610 15 HOH HOH . J 5 HOH B 10 611 16 HOH HOH . J 5 HOH B 11 612 18 HOH HOH . J 5 HOH B 12 613 19 HOH HOH . J 5 HOH B 13 614 23 HOH HOH . J 5 HOH B 14 615 26 HOH HOH . J 5 HOH B 15 616 30 HOH HOH . J 5 HOH B 16 617 32 HOH HOH . J 5 HOH B 17 618 39 HOH HOH . J 5 HOH B 18 619 40 HOH HOH . J 5 HOH B 19 620 45 HOH HOH . J 5 HOH B 20 621 47 HOH HOH . J 5 HOH B 21 622 48 HOH HOH . J 5 HOH B 22 623 49 HOH HOH . J 5 HOH B 23 624 50 HOH HOH . J 5 HOH B 24 625 51 HOH HOH . J 5 HOH B 25 626 57 HOH HOH . J 5 HOH B 26 627 60 HOH HOH . J 5 HOH B 27 628 63 HOH HOH . J 5 HOH B 28 629 65 HOH HOH . J 5 HOH B 29 630 68 HOH HOH . J 5 HOH B 30 631 71 HOH HOH . J 5 HOH B 31 632 72 HOH HOH . J 5 HOH B 32 633 73 HOH HOH . J 5 HOH B 33 634 79 HOH HOH . J 5 HOH B 34 635 80 HOH HOH . J 5 HOH B 35 636 81 HOH HOH . J 5 HOH B 36 637 82 HOH HOH . J 5 HOH B 37 638 83 HOH HOH . J 5 HOH B 38 639 84 HOH HOH . J 5 HOH B 39 640 85 HOH HOH . J 5 HOH B 40 641 87 HOH HOH . J 5 HOH B 41 642 88 HOH HOH . J 5 HOH B 42 643 90 HOH HOH . J 5 HOH B 43 644 91 HOH HOH . J 5 HOH B 44 645 93 HOH HOH . J 5 HOH B 45 646 96 HOH HOH . J 5 HOH B 46 647 97 HOH HOH . J 5 HOH B 47 648 99 HOH HOH . J 5 HOH B 48 649 101 HOH HOH . J 5 HOH B 49 650 103 HOH HOH . J 5 HOH B 50 651 107 HOH HOH . J 5 HOH B 51 652 113 HOH HOH . J 5 HOH B 52 653 115 HOH HOH . J 5 HOH B 53 654 116 HOH HOH . J 5 HOH B 54 655 119 HOH HOH . J 5 HOH B 55 656 121 HOH HOH . J 5 HOH B 56 657 122 HOH HOH . J 5 HOH B 57 658 124 HOH HOH . J 5 HOH B 58 659 126 HOH HOH . J 5 HOH B 59 660 129 HOH HOH . J 5 HOH B 60 661 131 HOH HOH . J 5 HOH B 61 662 132 HOH HOH . J 5 HOH B 62 663 135 HOH HOH . J 5 HOH B 63 664 138 HOH HOH . J 5 HOH B 64 665 146 HOH HOH . J 5 HOH B 65 666 147 HOH HOH . J 5 HOH B 66 667 149 HOH HOH . J 5 HOH B 67 668 150 HOH HOH . J 5 HOH B 68 669 151 HOH HOH . J 5 HOH B 69 670 152 HOH HOH . J 5 HOH B 70 671 154 HOH HOH . J 5 HOH B 71 672 155 HOH HOH . J 5 HOH B 72 673 156 HOH HOH . J 5 HOH B 73 674 157 HOH HOH . J 5 HOH B 74 675 158 HOH HOH . J 5 HOH B 75 676 160 HOH HOH . J 5 HOH B 76 677 172 HOH HOH . J 5 HOH B 77 678 174 HOH HOH . J 5 HOH B 78 679 177 HOH HOH . J 5 HOH B 79 680 181 HOH HOH . J 5 HOH B 80 681 183 HOH HOH . J 5 HOH B 81 682 185 HOH HOH . J 5 HOH B 82 683 187 HOH HOH . J 5 HOH B 83 684 188 HOH HOH . J 5 HOH B 84 685 190 HOH HOH . J 5 HOH B 85 686 191 HOH HOH . J 5 HOH B 86 687 192 HOH HOH . J 5 HOH B 87 688 194 HOH HOH . J 5 HOH B 88 689 200 HOH HOH . J 5 HOH B 89 690 209 HOH HOH . J 5 HOH B 90 691 210 HOH HOH . J 5 HOH B 91 692 221 HOH HOH . J 5 HOH B 92 693 224 HOH HOH . J 5 HOH B 93 694 226 HOH HOH . J 5 HOH B 94 695 227 HOH HOH . J 5 HOH B 95 696 228 HOH HOH . J 5 HOH B 96 697 237 HOH HOH . J 5 HOH B 97 698 238 HOH HOH . J 5 HOH B 98 699 240 HOH HOH . J 5 HOH B 99 700 242 HOH HOH . J 5 HOH B 100 701 243 HOH HOH . J 5 HOH B 101 702 248 HOH HOH . J 5 HOH B 102 703 249 HOH HOH . J 5 HOH B 103 704 250 HOH HOH . J 5 HOH B 104 705 251 HOH HOH . J 5 HOH B 105 706 253 HOH HOH . J 5 HOH B 106 707 256 HOH HOH . J 5 HOH B 107 708 257 HOH HOH . J 5 HOH B 108 709 262 HOH HOH . J 5 HOH B 109 710 267 HOH HOH . J 5 HOH B 110 711 272 HOH HOH . J 5 HOH B 111 712 273 HOH HOH . J 5 HOH B 112 713 275 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -39.152 _atom_site.Cartn_y -54.841 _atom_site.Cartn_z 4.246 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #