data_2OQV # _model_server_result.job_id '_k4zNpOakpPBtDcsTu9-lA' _model_server_result.datetime_utc '2025-03-21 11:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 2OQV # _exptl.entry_id 2OQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 462.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4R)-1-{6-[3-(METHYLSULFONYL)PHENYL]PYRIMIDIN-4-YL}-4-(2,4,5-TRIFLUOROPHENYL)PIPERIDIN-3-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OQV _cell.length_a 65.012 _cell.length_b 118.203 _cell.length_c 232.517 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C22 H21 F3 N4 O2 S' _chem_comp.formula_weight 462.488 _chem_comp.id MA9 _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4R)-1-{6-[3-(METHYLSULFONYL)PHENYL]PYRIMIDIN-4-YL}-4-(2,4,5-TRIFLUOROPHENYL)PIPERIDIN-3-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 S MA9 sing 216 n n C5 C32 MA9 doub 217 n y C5 C6 MA9 sing 218 n y C6 C7 MA9 doub 219 n y C6 H6 MA9 sing 220 n n C7 C8 MA9 sing 221 n y C7 H7 MA9 sing 222 n n C8 C9 MA9 doub 223 n y C8 H8 MA9 sing 224 n n C10 N31 MA9 sing 225 n y C10 C9 MA9 sing 226 n y C10 C11 MA9 doub 227 n y C15 C14 MA9 sing 228 n n C15 C16 MA9 sing 229 n n C15 H151 MA9 sing 230 n n C15 H152 MA9 sing 231 n n C17 C16 MA9 sing 232 n n C17 C18 MA9 doub 233 n y C17 C24 MA9 sing 234 n y C21 C19 MA9 doub 235 n y C21 C23 MA9 sing 236 n y C21 F22 MA9 sing 237 n n C24 F25 MA9 sing 238 n n C24 C23 MA9 doub 239 n y C26 C28 MA9 sing 240 n n C26 C16 MA9 sing 241 n n C26 N27 MA9 sing 242 n n C26 H26 MA9 sing 243 n n C28 N MA9 sing 244 n n C28 H281 MA9 sing 245 n n C28 H282 MA9 sing 246 n n C23 H23 MA9 sing 247 n n C19 C18 MA9 sing 248 n y C19 F MA9 sing 249 n n C18 H18 MA9 sing 250 n n C16 H16 MA9 sing 251 n n C14 N MA9 sing 252 n n C14 H141 MA9 sing 253 n n C14 H142 MA9 sing 254 n n N27 H271 MA9 sing 255 n n N27 H272 MA9 sing 256 n n N C12 MA9 sing 257 n n C12 N29 MA9 doub 258 n y C12 C11 MA9 sing 259 n y C11 H11 MA9 sing 260 n n N29 C30 MA9 sing 261 n y C30 N31 MA9 doub 262 n y C30 H30 MA9 sing 263 n n C9 C32 MA9 sing 264 n y C32 H32 MA9 sing 265 n n S C MA9 sing 266 n n S O4 MA9 doub 267 n n S O MA9 doub 268 n n C H1 MA9 sing 269 n n C H2 MA9 sing 270 n n C H3 MA9 sing 271 n n # _atom_sites.entry_id 2OQV _atom_sites.fract_transf_matrix[1][1] 0.015382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id MA9 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 901 _pdbx_nonpoly_scheme.pdb_mon_id MA9 _pdbx_nonpoly_scheme.auth_mon_id MA9 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 MA9 . . . C 2 12.569 57.479 17.554 1 46.35 ? C5 MA9 901 A 1 HETATM 2 C C6 MA9 . . . C 2 11.467 57.77 18.379 1 44.83 ? C6 MA9 901 A 1 HETATM 3 C C7 MA9 . . . C 2 11.45 57.337 19.717 1 45.37 ? C7 MA9 901 A 1 HETATM 4 C C8 MA9 . . . C 2 12.534 56.613 20.243 1 44.61 ? C8 MA9 901 A 1 HETATM 5 C C10 MA9 . . . C 2 14.809 55.578 19.776 1 41.98 ? C10 MA9 901 A 1 HETATM 6 C C15 MA9 . . . C 2 17.961 52.755 23.773 1 35.97 ? C15 MA9 901 A 1 HETATM 7 C C17 MA9 . . . C 2 18.088 52.942 26.224 1 31.08 ? C17 MA9 901 A 1 HETATM 8 C C21 MA9 . . . C 2 18.754 51.611 28.54 1 30.36 ? C21 MA9 901 A 1 HETATM 9 C C24 MA9 . . . C 2 18.812 53.604 27.195 1 30.28 ? C24 MA9 901 A 1 HETATM 10 C C26 MA9 . . . C 2 16.383 54.276 24.917 1 35.95 ? C26 MA9 901 A 1 HETATM 11 C C28 MA9 . . . C 2 16.372 55.21 23.715 1 37.28 ? C28 MA9 901 A 1 HETATM 12 F F25 MA9 . . . C 2 19.169 54.882 26.998 1 28.07 ? F25 MA9 901 A 1 HETATM 13 C C23 MA9 . . . C 2 19.146 52.938 28.375 1 30.73 ? C23 MA9 901 A 1 HETATM 14 F F22 MA9 . . . C 2 19.053 50.954 29.66 1 30.37 ? F22 MA9 901 A 1 HETATM 15 C C19 MA9 . . . C 2 18.05 50.951 27.559 1 29.32 ? C19 MA9 901 A 1 HETATM 16 F F MA9 . . . C 2 17.686 49.674 27.735 1 30.38 ? F MA9 901 A 1 HETATM 17 C C18 MA9 . . . C 2 17.711 51.612 26.396 1 30.05 ? C18 MA9 901 A 1 HETATM 18 C C16 MA9 . . . C 2 17.772 53.666 24.978 1 32.9 ? C16 MA9 901 A 1 HETATM 19 C C14 MA9 . . . C 2 18.13 53.656 22.579 1 37.12 ? C14 MA9 901 A 1 HETATM 20 N N27 MA9 . . . C 2 16.077 54.999 26.131 1 34.63 ? N27 MA9 901 A 1 HETATM 21 N N MA9 . . . C 2 16.949 54.515 22.549 1 38.35 ? N MA9 901 A 1 HETATM 22 C C12 MA9 . . . C 2 16.401 54.695 21.282 1 39.15 ? C12 MA9 901 A 1 HETATM 23 C C11 MA9 . . . C 2 15.253 55.469 21.083 1 39.58 ? C11 MA9 901 A 1 HETATM 24 N N29 MA9 . . . C 2 17.025 54.097 20.219 1 40.17 ? N29 MA9 901 A 1 HETATM 25 C C30 MA9 . . . C 2 16.555 54.223 18.962 1 40.49 ? C30 MA9 901 A 1 HETATM 26 N N31 MA9 . . . C 2 15.455 54.96 18.749 1 39.3 ? N31 MA9 901 A 1 HETATM 27 C C9 MA9 . . . C 2 13.619 56.344 19.403 1 41 ? C9 MA9 901 A 1 HETATM 28 C C32 MA9 . . . C 2 13.629 56.766 18.084 1 44.62 ? C32 MA9 901 A 1 HETATM 29 S S MA9 . . . C 2 12.701 57.918 16.013 1 47.32 ? S MA9 901 A 1 HETATM 30 O O MA9 . . . C 2 13.731 58.933 15.89 1 46.94 ? O MA9 901 A 1 HETATM 31 O O4 MA9 . . . C 2 11.423 58.419 15.551 1 47.42 ? O4 MA9 901 A 1 HETATM 32 C C MA9 . . . C 2 13.124 56.565 15.115 1 47.18 ? C MA9 901 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #