data_2ORH # _model_server_result.job_id OhaYxFz6hePUPpd630ktkw _model_server_result.datetime_utc '2024-11-05 01:59:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2orh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":28}' # _entry.id 2ORH # _exptl.entry_id 2ORH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.01 _cell.angle_gamma 90 _cell.entry_id 2ORH _cell.length_a 65.61 _cell.length_b 24.17 _cell.length_c 36.962 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ORH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 131.22 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OP2 DA 6 A DA 6 1_555 C NA NA . A NA 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc2 F O HOH . B HOH 21 1_555 D NA NA . B NA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 F O HOH . B HOH 22 1_555 D NA NA . B NA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc4 F O HOH . B HOH 26 1_555 D NA NA . B NA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc5 D NA NA . B NA 28 1_555 F O HOH . B HOH 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 D NA NA . B NA 28 1_555 F O HOH . B HOH 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 4 A DA 4 1_555 B N3 DU 7 B DU 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 4 A DA 4 1_555 B O4 DU 7 B DU 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog12 A N3 DT 5 A DT 5 1_555 B N1 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 6 A DA 6 1_555 B N3 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 6 A DA 6 1_555 B O4 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ORH _atom_sites.fract_transf_matrix[1][1] 0.015242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00555 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.041374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 63 63 NA NA . D 3 NA B 1 28 28 NA NA . E 4 HOH A 1 25 25 HOH HOH . E 4 HOH A 2 27 27 HOH HOH . E 4 HOH A 3 29 29 HOH HOH . E 4 HOH A 4 32 32 HOH HOH . E 4 HOH A 5 35 35 HOH HOH . E 4 HOH A 6 36 36 HOH HOH . E 4 HOH A 7 40 40 HOH HOH . E 4 HOH A 8 42 42 HOH HOH . E 4 HOH A 9 44 44 HOH HOH . E 4 HOH A 10 45 45 HOH HOH . E 4 HOH A 11 48 48 HOH HOH . E 4 HOH A 12 49 49 HOH HOH . E 4 HOH A 13 53 53 HOH HOH . E 4 HOH A 14 54 54 HOH HOH . E 4 HOH A 15 55 55 HOH HOH . E 4 HOH A 16 56 56 HOH HOH . E 4 HOH A 17 58 58 HOH HOH . E 4 HOH A 18 59 59 HOH HOH . E 4 HOH A 19 61 61 HOH HOH . E 4 HOH A 20 65 65 HOH HOH . E 4 HOH A 21 67 67 HOH HOH . E 4 HOH A 22 68 68 HOH HOH . E 4 HOH A 23 69 69 HOH HOH . E 4 HOH A 24 71 71 HOH HOH . E 4 HOH A 25 72 72 HOH HOH . E 4 HOH A 26 73 73 HOH HOH . E 4 HOH A 27 74 74 HOH HOH . E 4 HOH A 28 76 76 HOH HOH . E 4 HOH A 29 78 78 HOH HOH . E 4 HOH A 30 79 79 HOH HOH . E 4 HOH A 31 82 82 HOH HOH . E 4 HOH A 32 83 83 HOH HOH . E 4 HOH A 33 84 84 HOH HOH . E 4 HOH A 34 89 89 HOH HOH . E 4 HOH A 35 90 90 HOH HOH . E 4 HOH A 36 94 94 HOH HOH . E 4 HOH A 37 96 96 HOH HOH . E 4 HOH A 38 98 98 HOH HOH . E 4 HOH A 39 101 101 HOH HOH . E 4 HOH A 40 102 102 HOH HOH . E 4 HOH A 41 104 104 HOH HOH . E 4 HOH A 42 108 108 HOH HOH . E 4 HOH A 43 117 117 HOH HOH . F 4 HOH B 1 21 21 HOH HOH . F 4 HOH B 2 22 22 HOH HOH . F 4 HOH B 3 23 23 HOH HOH . F 4 HOH B 4 24 24 HOH HOH . F 4 HOH B 5 26 26 HOH HOH . F 4 HOH B 6 30 30 HOH HOH . F 4 HOH B 7 31 31 HOH HOH . F 4 HOH B 8 33 33 HOH HOH . F 4 HOH B 9 34 34 HOH HOH . F 4 HOH B 10 37 37 HOH HOH . F 4 HOH B 11 38 38 HOH HOH . F 4 HOH B 12 39 39 HOH HOH . F 4 HOH B 13 43 43 HOH HOH . F 4 HOH B 14 46 46 HOH HOH . F 4 HOH B 15 47 47 HOH HOH . F 4 HOH B 16 50 50 HOH HOH . F 4 HOH B 17 51 51 HOH HOH . F 4 HOH B 18 52 52 HOH HOH . F 4 HOH B 19 57 57 HOH HOH . F 4 HOH B 20 60 60 HOH HOH . F 4 HOH B 21 62 62 HOH HOH . F 4 HOH B 22 64 64 HOH HOH . F 4 HOH B 23 66 66 HOH HOH . F 4 HOH B 24 70 70 HOH HOH . F 4 HOH B 25 75 75 HOH HOH . F 4 HOH B 26 77 77 HOH HOH . F 4 HOH B 27 80 80 HOH HOH . F 4 HOH B 28 81 81 HOH HOH . F 4 HOH B 29 85 85 HOH HOH . F 4 HOH B 30 86 86 HOH HOH . F 4 HOH B 31 87 87 HOH HOH . F 4 HOH B 32 88 88 HOH HOH . F 4 HOH B 33 91 91 HOH HOH . F 4 HOH B 34 92 92 HOH HOH . F 4 HOH B 35 93 93 HOH HOH . F 4 HOH B 36 95 95 HOH HOH . F 4 HOH B 37 97 97 HOH HOH . F 4 HOH B 38 99 99 HOH HOH . F 4 HOH B 39 100 100 HOH HOH . F 4 HOH B 40 103 103 HOH HOH . F 4 HOH B 41 105 105 HOH HOH . F 4 HOH B 42 106 106 HOH HOH . F 4 HOH B 43 107 107 HOH HOH . F 4 HOH B 44 109 109 HOH HOH . F 4 HOH B 45 110 110 HOH HOH . F 4 HOH B 46 111 111 HOH HOH . F 4 HOH B 47 112 112 HOH HOH . F 4 HOH B 48 113 113 HOH HOH . F 4 HOH B 49 114 114 HOH HOH . F 4 HOH B 50 115 115 HOH HOH . F 4 HOH B 51 116 116 HOH HOH . F 4 HOH B 52 118 118 HOH HOH . F 4 HOH B 53 119 119 HOH HOH . F 4 HOH B 54 120 120 HOH HOH . F 4 HOH B 55 121 121 HOH HOH . F 4 HOH B 56 122 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 74.135 _atom_site.Cartn_y 14.437 _atom_site.Cartn_z 13.106 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 28 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #