data_2ORR # _model_server_result.job_id iONbPTtFW-D3uZBJbobDlg _model_server_result.datetime_utc '2024-11-06 01:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2orr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 2ORR # _exptl.entry_id 2ORR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ORR _cell.length_a 63.403 _cell.length_b 74.048 _cell.length_c 93.253 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ORR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_546 x+1/2,-y-1/2,-z+1 1 0 0 0 -1 0 0 0 -1 31.7015 -37.024 93.253 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 81 A CYS 194 1_555 B FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 B FE HEM . A HEM 600 1_555 C NFE 333 . A 333 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 184 n n CHA C4D HEM doub 185 n n CHA HHA HEM sing 186 n n CHB C4A HEM sing 187 n n CHB C1B HEM doub 188 n n CHB HHB HEM sing 189 n n CHC C4B HEM sing 190 n n CHC C1C HEM doub 191 n n CHC HHC HEM sing 192 n n CHD C4C HEM doub 193 n n CHD C1D HEM sing 194 n n CHD HHD HEM sing 195 n n C1A C2A HEM doub 196 n y C1A NA HEM sing 197 n y C2A C3A HEM sing 198 n y C2A CAA HEM sing 199 n n C3A C4A HEM doub 200 n y C3A CMA HEM sing 201 n n C4A NA HEM sing 202 n y CMA HMA HEM sing 203 n n CMA HMAA HEM sing 204 n n CMA HMAB HEM sing 205 n n CAA CBA HEM sing 206 n n CAA HAA HEM sing 207 n n CAA HAAA HEM sing 208 n n CBA CGA HEM sing 209 n n CBA HBA HEM sing 210 n n CBA HBAA HEM sing 211 n n CGA O1A HEM doub 212 n n CGA O2A HEM sing 213 n n C1B C2B HEM sing 214 n n C1B NB HEM sing 215 n n C2B C3B HEM doub 216 n n C2B CMB HEM sing 217 n n C3B C4B HEM sing 218 n n C3B CAB HEM sing 219 n n C4B NB HEM doub 220 n n CMB HMB HEM sing 221 n n CMB HMBA HEM sing 222 n n CMB HMBB HEM sing 223 n n CAB CBB HEM doub 224 n n CAB HAB HEM sing 225 n n CBB HBB HEM sing 226 n n CBB HBBA HEM sing 227 n n C1C C2C HEM sing 228 n y C1C NC HEM sing 229 n y C2C C3C HEM doub 230 n y C2C CMC HEM sing 231 n n C3C C4C HEM sing 232 n y C3C CAC HEM sing 233 n n C4C NC HEM sing 234 n y CMC HMC HEM sing 235 n n CMC HMCA HEM sing 236 n n CMC HMCB HEM sing 237 n n CAC CBC HEM doub 238 n n CAC HAC HEM sing 239 n n CBC HBC HEM sing 240 n n CBC HBCA HEM sing 241 n n C1D C2D HEM sing 242 n n C1D ND HEM doub 243 n n C2D C3D HEM doub 244 n n C2D CMD HEM sing 245 n n C3D C4D HEM sing 246 n n C3D CAD HEM sing 247 n n C4D ND HEM sing 248 n n CMD HMD HEM sing 249 n n CMD HMDA HEM sing 250 n n CMD HMDB HEM sing 251 n n CAD CBD HEM sing 252 n n CAD HAD HEM sing 253 n n CAD HADA HEM sing 254 n n CBD CGD HEM sing 255 n n CBD HBD HEM sing 256 n n CBD HBDA HEM sing 257 n n CGD O1D HEM doub 258 n n CGD O2D HEM sing 259 n n O2A H2A HEM sing 260 n n O2D H2D HEM sing 261 n n FE NA HEM sing 262 n n FE NB HEM sing 263 n n FE NC HEM sing 264 n n FE ND HEM sing 265 n n # _atom_sites.entry_id 2ORR _atom_sites.fract_transf_matrix[1][1] 0.015772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 333 A 1 601 601 333 333 . D 4 EDO A 1 1602 1602 EDO EDO . E 4 EDO A 1 1603 1603 EDO EDO . F 4 EDO A 1 1604 1604 EDO EDO . G 4 EDO A 1 1605 1605 EDO EDO . H 5 HOH A 1 602 602 HOH HOH . H 5 HOH A 2 604 604 HOH HOH . H 5 HOH A 3 605 605 HOH HOH . H 5 HOH A 4 606 606 HOH HOH . H 5 HOH A 5 609 609 HOH HOH . H 5 HOH A 6 610 610 HOH HOH . H 5 HOH A 7 611 611 HOH HOH . H 5 HOH A 8 616 616 HOH HOH . H 5 HOH A 9 619 619 HOH HOH . H 5 HOH A 10 620 620 HOH HOH . H 5 HOH A 11 623 623 HOH HOH . H 5 HOH A 12 625 625 HOH HOH . H 5 HOH A 13 626 626 HOH HOH . H 5 HOH A 14 628 628 HOH HOH . H 5 HOH A 15 629 629 HOH HOH . H 5 HOH A 16 630 630 HOH HOH . H 5 HOH A 17 632 632 HOH HOH . H 5 HOH A 18 633 633 HOH HOH . H 5 HOH A 19 634 634 HOH HOH . H 5 HOH A 20 635 635 HOH HOH . H 5 HOH A 21 637 637 HOH HOH . H 5 HOH A 22 644 644 HOH HOH . H 5 HOH A 23 645 645 HOH HOH . H 5 HOH A 24 649 649 HOH HOH . H 5 HOH A 25 650 650 HOH HOH . H 5 HOH A 26 653 653 HOH HOH . H 5 HOH A 27 654 654 HOH HOH . H 5 HOH A 28 656 656 HOH HOH . H 5 HOH A 29 657 657 HOH HOH . H 5 HOH A 30 659 659 HOH HOH . H 5 HOH A 31 661 661 HOH HOH . H 5 HOH A 32 665 665 HOH HOH . H 5 HOH A 33 667 667 HOH HOH . H 5 HOH A 34 672 672 HOH HOH . H 5 HOH A 35 673 673 HOH HOH . H 5 HOH A 36 677 677 HOH HOH . H 5 HOH A 37 684 684 HOH HOH . H 5 HOH A 38 689 689 HOH HOH . H 5 HOH A 39 690 690 HOH HOH . H 5 HOH A 40 699 699 HOH HOH . H 5 HOH A 41 711 711 HOH HOH . H 5 HOH A 42 713 713 HOH HOH . H 5 HOH A 43 714 714 HOH HOH . H 5 HOH A 44 720 720 HOH HOH . H 5 HOH A 45 721 721 HOH HOH . H 5 HOH A 46 723 723 HOH HOH . H 5 HOH A 47 725 725 HOH HOH . H 5 HOH A 48 730 730 HOH HOH . H 5 HOH A 49 731 731 HOH HOH . H 5 HOH A 50 734 734 HOH HOH . H 5 HOH A 51 739 739 HOH HOH . H 5 HOH A 52 740 740 HOH HOH . H 5 HOH A 53 749 749 HOH HOH . H 5 HOH A 54 752 752 HOH HOH . H 5 HOH A 55 755 755 HOH HOH . H 5 HOH A 56 759 759 HOH HOH . H 5 HOH A 57 760 760 HOH HOH . H 5 HOH A 58 761 761 HOH HOH . H 5 HOH A 59 768 768 HOH HOH . H 5 HOH A 60 769 769 HOH HOH . H 5 HOH A 61 773 773 HOH HOH . H 5 HOH A 62 775 775 HOH HOH . H 5 HOH A 63 779 779 HOH HOH . H 5 HOH A 64 787 787 HOH HOH . H 5 HOH A 65 789 789 HOH HOH . H 5 HOH A 66 792 792 HOH HOH . H 5 HOH A 67 796 796 HOH HOH . H 5 HOH A 68 797 797 HOH HOH . H 5 HOH A 69 809 809 HOH HOH . H 5 HOH A 70 810 810 HOH HOH . H 5 HOH A 71 812 812 HOH HOH . H 5 HOH A 72 819 819 HOH HOH . H 5 HOH A 73 823 823 HOH HOH . H 5 HOH A 74 832 832 HOH HOH . H 5 HOH A 75 835 835 HOH HOH . H 5 HOH A 76 847 847 HOH HOH . H 5 HOH A 77 855 855 HOH HOH . H 5 HOH A 78 1007 1007 HOH HOH . H 5 HOH A 79 1018 1018 HOH HOH . H 5 HOH A 80 1024 1024 HOH HOH . H 5 HOH A 81 1031 1031 HOH HOH . H 5 HOH A 82 1038 1038 HOH HOH . H 5 HOH A 83 1047 1047 HOH HOH . H 5 HOH A 84 1058 1058 HOH HOH . H 5 HOH A 85 1064 1064 HOH HOH . H 5 HOH A 86 1069 1069 HOH HOH . H 5 HOH A 87 1075 1075 HOH HOH . H 5 HOH A 88 1076 1076 HOH HOH . H 5 HOH A 89 1106 1106 HOH HOH . H 5 HOH A 90 1108 1108 HOH HOH . H 5 HOH A 91 1110 1110 HOH HOH . H 5 HOH A 92 1112 1112 HOH HOH . H 5 HOH A 93 1119 1119 HOH HOH . H 5 HOH A 94 1145 1145 HOH HOH . H 5 HOH A 95 1154 1154 HOH HOH . H 5 HOH A 96 1155 1155 HOH HOH . H 5 HOH A 97 1157 1157 HOH HOH . H 5 HOH A 98 1165 1165 HOH HOH . H 5 HOH A 99 1202 1202 HOH HOH . H 5 HOH A 100 1213 1213 HOH HOH . H 5 HOH A 101 1240 1240 HOH HOH . H 5 HOH A 102 1248 1248 HOH HOH . H 5 HOH A 103 1264 1264 HOH HOH . H 5 HOH A 104 1279 1279 HOH HOH . H 5 HOH A 105 1286 1286 HOH HOH . H 5 HOH A 106 1296 1296 HOH HOH . H 5 HOH A 107 1300 1300 HOH HOH . H 5 HOH A 108 1303 1303 HOH HOH . H 5 HOH A 109 1304 1304 HOH HOH . H 5 HOH A 110 1305 1305 HOH HOH . H 5 HOH A 111 1306 1306 HOH HOH . H 5 HOH A 112 1307 1307 HOH HOH . H 5 HOH A 113 1309 1309 HOH HOH . H 5 HOH A 114 1310 1310 HOH HOH . H 5 HOH A 115 1311 1311 HOH HOH . H 5 HOH A 116 1312 1312 HOH HOH . H 5 HOH A 117 1316 1316 HOH HOH . H 5 HOH A 118 1319 1319 HOH HOH . H 5 HOH A 119 1321 1321 HOH HOH . H 5 HOH A 120 1323 1323 HOH HOH . H 5 HOH A 121 1325 1325 HOH HOH . H 5 HOH A 122 1327 1327 HOH HOH . H 5 HOH A 123 1328 1328 HOH HOH . H 5 HOH A 124 1331 1331 HOH HOH . H 5 HOH A 125 1335 1335 HOH HOH . H 5 HOH A 126 1342 1342 HOH HOH . H 5 HOH A 127 1401 1401 HOH HOH . H 5 HOH A 128 1402 1402 HOH HOH . H 5 HOH A 129 1403 1403 HOH HOH . H 5 HOH A 130 1404 1404 HOH HOH . H 5 HOH A 131 1405 1405 HOH HOH . H 5 HOH A 132 1406 1406 HOH HOH . H 5 HOH A 133 1407 1407 HOH HOH . H 5 HOH A 134 1408 1408 HOH HOH . H 5 HOH A 135 1409 1409 HOH HOH . H 5 HOH A 136 1410 1410 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 71.779 -9.879 55.421 1 29.45 ? CHA HEM 600 A 1 HETATM 2 C CHB HEM . . . B 2 68.643 -6.36 56.654 1 30.58 ? CHB HEM 600 A 1 HETATM 3 C CHC HEM . . . B 2 64.904 -9.468 56.607 1 28.68 ? CHC HEM 600 A 1 HETATM 4 C CHD HEM . . . B 2 68.17 -13.043 56.231 1 27.34 ? CHD HEM 600 A 1 HETATM 5 C C1A HEM . . . B 2 71.223 -8.627 55.722 1 31.44 ? C1A HEM 600 A 1 HETATM 6 C C2A HEM . . . B 2 71.931 -7.351 55.622 1 33.1 ? C2A HEM 600 A 1 HETATM 7 C C3A HEM . . . B 2 71.054 -6.38 55.976 1 33.66 ? C3A HEM 600 A 1 HETATM 8 C C4A HEM . . . B 2 69.785 -7.04 56.264 1 31.92 ? C4A HEM 600 A 1 HETATM 9 C CMA HEM . . . B 2 71.349 -4.886 56.113 1 34.69 ? CMA HEM 600 A 1 HETATM 10 C CAA HEM . . . B 2 73.371 -7.179 55.188 1 37.52 ? CAA HEM 600 A 1 HETATM 11 C CBA HEM . . . B 2 73.431 -6.921 53.695 1 46.47 ? CBA HEM 600 A 1 HETATM 12 C CGA HEM . . . B 2 74.851 -6.798 53.182 1 53.03 ? CGA HEM 600 A 1 HETATM 13 O O1A HEM . . . B 2 75.04 -6.773 51.944 1 57.42 ? O1A HEM 600 A 1 HETATM 14 O O2A HEM . . . B 2 75.779 -6.728 54.017 1 54.99 ? O2A HEM 600 A 1 HETATM 15 C C1B HEM . . . B 2 67.379 -6.909 56.824 1 30.87 ? C1B HEM 600 A 1 HETATM 16 C C2B HEM . . . B 2 66.196 -6.097 57.021 1 30.45 ? C2B HEM 600 A 1 HETATM 17 C C3B HEM . . . B 2 65.136 -6.94 56.933 1 29.18 ? C3B HEM 600 A 1 HETATM 18 C C4B HEM . . . B 2 65.679 -8.303 56.764 1 28.2 ? C4B HEM 600 A 1 HETATM 19 C CMB HEM . . . B 2 66.169 -4.578 57.253 1 31.09 ? CMB HEM 600 A 1 HETATM 20 C CAB HEM . . . B 2 63.831 -6.552 56.769 1 29.57 ? CAB HEM 600 A 1 HETATM 21 C CBB HEM . . . B 2 62.737 -6.866 57.636 1 30.41 ? CBB HEM 600 A 1 HETATM 22 C C1C HEM . . . B 2 65.477 -10.739 56.41 1 28.26 ? C1C HEM 600 A 1 HETATM 23 C C2C HEM . . . B 2 64.73 -11.997 56.3 1 25.86 ? C2C HEM 600 A 1 HETATM 24 C C3C HEM . . . B 2 65.648 -13.008 56.27 1 24.62 ? C3C HEM 600 A 1 HETATM 25 C C4C HEM . . . B 2 66.962 -12.362 56.333 1 27.72 ? C4C HEM 600 A 1 HETATM 26 C CMC HEM . . . B 2 63.218 -12.064 56.108 1 22.34 ? CMC HEM 600 A 1 HETATM 27 C CAC HEM . . . B 2 65.405 -14.39 56.134 1 23.95 ? CAC HEM 600 A 1 HETATM 28 C CBC HEM . . . B 2 64.169 -15.016 56.584 1 19.85 ? CBC HEM 600 A 1 HETATM 29 C C1D HEM . . . B 2 69.409 -12.5 55.95 1 27.52 ? C1D HEM 600 A 1 HETATM 30 C C2D HEM . . . B 2 70.61 -13.308 55.654 1 27.86 ? C2D HEM 600 A 1 HETATM 31 C C3D HEM . . . B 2 71.609 -12.415 55.413 1 28.11 ? C3D HEM 600 A 1 HETATM 32 C C4D HEM . . . B 2 71.022 -11.075 55.477 1 27.95 ? C4D HEM 600 A 1 HETATM 33 C CMD HEM . . . B 2 70.721 -14.85 55.666 1 27.69 ? CMD HEM 600 A 1 HETATM 34 C CAD HEM . . . B 2 73.101 -12.688 55.439 1 30.94 ? CAD HEM 600 A 1 HETATM 35 C CBD HEM . . . B 2 73.511 -12.789 56.92 1 36.05 ? CBD HEM 600 A 1 HETATM 36 C CGD HEM . . . B 2 75.003 -12.988 57.112 1 41.54 ? CGD HEM 600 A 1 HETATM 37 O O1D HEM . . . B 2 75.48 -12.854 58.262 1 45.9 ? O1D HEM 600 A 1 HETATM 38 O O2D HEM . . . B 2 75.699 -13.277 56.115 1 43.42 ? O2D HEM 600 A 1 HETATM 39 N NA HEM . . . B 2 69.875 -8.418 56.075 1 28.33 ? NA HEM 600 A 1 HETATM 40 N NB HEM . . . B 2 67.05 -8.258 56.656 1 28.41 ? NB HEM 600 A 1 HETATM 41 N NC HEM . . . B 2 66.844 -10.969 56.365 1 28.28 ? NC HEM 600 A 1 HETATM 42 N ND HEM . . . B 2 69.665 -11.136 55.821 1 28.88 ? ND HEM 600 A 1 HETATM 43 FE FE HEM . . . B 2 68.341 -9.694 56.219 1 27.72 ? FE HEM 600 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #